Wall clock time and date at job start Wed Apr 1 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00400 * 2 1 4 4 C 1.50694 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.38359 * 120.34746 * 90.00246 * 4 3 2 6 6 N 1.31926 * 121.07702 * 180.02562 * 5 4 3 7 7 C 1.31685 * 121.88479 * 0.02562 * 6 5 4 8 8 C 1.39527 * 120.56805 * 359.97438 * 7 6 5 9 9 C 1.47837 * 120.56294 * 180.02562 * 8 7 6 10 10 O 1.21546 * 120.00103 * 137.88436 * 9 8 7 11 11 N 1.34773 * 120.00029 * 317.88505 * 9 8 7 12 12 C 1.44970 * 117.32177 * 355.79669 * 11 9 8 13 13 C 1.51971 * 111.87883 * 203.65937 * 12 11 9 14 14 O 1.41319 * 111.54333 * 319.32512 * 13 12 11 15 15 C 1.40784 * 118.40179 * 56.93818 * 14 13 12 16 16 H 1.08993 * 109.35552 * 188.31335 * 15 14 13 17 17 C 1.54202 * 110.22689 * 67.70237 * 15 14 13 18 18 N 1.46867 * 106.39724 * 210.33812 * 17 15 14 19 19 C 1.36945 * 125.36750 * 197.82074 * 18 17 15 20 20 H 1.07999 * 119.99704 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99851 * 0.03088 * 19 18 17 22 22 N 1.31621 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47578 * 89.99352 * 23 21 19 25 25 H 1.48497 * 109.47227 * 209.99734 * 23 21 19 26 26 H 1.48509 * 109.47038 * 329.99628 * 23 21 19 27 27 C 1.46785 * 109.27224 * 17.84165 * 18 17 15 28 28 C 1.44542 * 117.32592 * 175.77300 * 11 9 8 29 29 H 1.08994 * 109.49003 * 285.90387 * 28 11 9 30 30 C 1.38351 * 120.35172 * 270.30204 * 4 3 2 31 31 H 1.09001 * 109.47163 * 60.00151 * 1 2 3 32 32 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46981 * 300.00099 * 1 2 3 34 34 H 1.08997 * 109.47182 * 59.99886 * 3 2 1 35 35 H 1.09003 * 109.46864 * 300.00123 * 3 2 1 36 36 H 1.07997 * 119.46115 * 0.03843 * 5 4 3 37 37 H 1.07999 * 119.72259 * 179.97438 * 7 6 5 38 38 H 1.08998 * 108.99709 * 324.27938 * 12 11 9 39 39 H 1.08997 * 108.99680 * 83.04317 * 12 11 9 40 40 H 1.08999 * 109.06731 * 79.86107 * 13 12 11 41 41 H 1.09004 * 109.06360 * 198.79780 * 13 12 11 42 42 H 1.09005 * 110.06983 * 91.10888 * 17 15 14 43 43 H 1.08999 * 110.12093 * 329.60002 * 17 15 14 44 44 H 0.97003 * 119.99686 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.83648 * 239.35875 * 27 18 17 46 46 H 1.09008 * 109.82878 * 118.38863 * 27 18 17 47 47 H 1.08001 * 120.85856 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.2099 1.1309 -1.1931 6 7 5.5249 1.0262 -1.2093 7 6 6.2319 0.9692 -0.0998 8 6 5.6038 1.0191 1.1451 9 6 6.3977 0.9557 2.3907 10 8 6.1244 1.6855 3.3234 11 7 7.4246 0.0887 2.4919 12 6 7.6414 -0.8185 1.3820 13 6 8.3904 -2.0693 1.8110 14 8 9.4276 -1.7663 2.7218 15 6 9.0974 -1.0911 3.9122 16 1 10.0123 -0.8033 4.4300 17 6 8.2500 -2.0013 4.8240 18 7 7.3708 -1.1128 5.5951 19 6 6.7125 -1.4534 6.7466 20 1 6.0851 -0.7288 7.2444 21 6 6.8516 -2.7298 7.2740 22 7 7.6159 -3.6130 6.6671 23 14 5.9531 -3.1947 8.8443 24 1 4.6180 -3.7494 8.5051 25 1 6.7405 -4.2152 9.5816 26 1 5.7864 -1.9886 9.6947 27 6 7.3085 0.1976 4.9368 28 6 8.2197 0.1398 3.6978 29 1 8.8583 1.0228 3.6752 30 6 4.2084 1.1250 1.1948 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6887 1.8463 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.6689 1.1743 -2.1268 37 1 7.3071 0.8831 -0.1538 38 1 6.6762 -1.1077 0.9665 39 1 8.2183 -0.3058 0.6123 40 1 7.6909 -2.7585 2.2841 41 1 8.8186 -2.5475 0.9300 42 1 8.8974 -2.5633 5.4973 43 1 7.6539 -2.6860 4.2207 44 1 7.7129 -4.5051 7.0355 45 1 7.6608 0.9713 5.6190 46 1 6.2836 0.4101 4.6324 47 1 3.6891 1.1609 2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083108630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:37 Heat of formation + Delta-G solvation = -19.510803 kcal Electronic energy + Delta-G solvation = -31652.850127 eV Core-core repulsion = 27417.324201 eV Total energy + Delta-G solvation = -4235.525926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.33232 -40.12361 -38.38916 -37.98088 -35.95410 -35.03003 -33.27736 -32.75233 -31.79805 -30.06633 -28.01880 -27.88276 -27.41485 -25.89090 -25.01289 -24.20577 -23.40155 -22.74097 -21.08280 -19.97414 -18.81756 -17.76948 -17.31136 -17.23080 -16.77334 -16.69752 -16.56970 -15.88928 -15.66690 -15.51006 -15.20165 -14.69149 -14.60400 -14.33627 -13.99119 -13.91508 -13.61354 -13.37132 -13.09469 -12.90051 -12.75970 -12.47944 -12.21354 -12.19463 -12.03263 -11.77725 -11.42126 -11.11072 -10.91278 -10.76101 -10.51535 -10.43965 -10.13072 -10.10216 -10.09167 -9.89382 -9.76055 -9.46649 -9.29810 -8.98277 -8.59961 -8.32661 -6.80081 -5.67586 -3.05867 0.48814 0.89067 2.65670 2.89855 3.31955 3.40913 3.45916 3.48076 3.75550 4.03702 4.07077 4.27838 4.44539 4.49938 4.57711 4.64653 4.68034 4.79715 4.89340 5.00800 5.02039 5.07678 5.11274 5.22634 5.30407 5.36202 5.36837 5.40916 5.55107 5.63112 5.69724 5.78582 5.81611 5.86392 5.91301 6.09532 6.20800 6.25850 6.49149 6.73896 6.78909 7.10698 7.31954 7.36698 7.57055 7.60735 7.72191 7.86648 8.17254 8.31890 9.22294 9.82700 10.45098 11.39227 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003508 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.547414 B = 7980.400967 C = 9629.027408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.150 4.150 5 C 0.135 3.865 6 N -0.486 5.486 7 C 0.133 3.867 8 C -0.176 4.176 9 C 0.555 3.445 10 O -0.512 6.512 11 N -0.579 5.579 12 C 0.074 3.926 13 C 0.058 3.942 14 O -0.368 6.368 15 C 0.068 3.932 16 H 0.115 0.885 17 C 0.140 3.860 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.123 3.877 28 C 0.111 3.889 29 H 0.074 0.926 30 C -0.002 4.002 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.062 0.938 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 8.599 -18.329 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.152 4.152 5 C -0.022 4.022 6 N -0.193 5.193 7 C -0.025 4.025 8 C -0.181 4.181 9 C 0.342 3.658 10 O -0.388 6.388 11 N -0.312 5.312 12 C -0.050 4.050 13 C -0.020 4.020 14 O -0.285 6.285 15 C 0.009 3.991 16 H 0.133 0.867 17 C 0.014 3.986 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.002 4.002 28 C 0.007 3.993 29 H 0.091 0.909 30 C -0.028 4.028 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.147 8.527 -18.516 21.292 hybrid contribution -1.489 -0.025 1.589 2.178 sum -7.637 8.502 -16.927 20.424 Atomic orbital electron populations 1.22785 0.80547 1.03157 1.00099 1.87993 1.19970 1.26973 1.95437 1.21225 0.88566 0.85538 1.01594 1.20526 0.95860 1.04644 0.94164 1.22850 0.89976 0.91897 0.97448 1.67788 1.07832 1.13031 1.30667 1.23321 1.00838 0.91817 0.86490 1.21028 0.95112 1.06608 0.95360 1.18138 0.80129 0.81037 0.86534 1.90781 1.68129 1.42024 1.37914 1.46588 1.31010 1.35191 1.18457 1.21934 1.01503 0.92613 0.88911 1.22247 0.91411 0.94632 0.93662 1.86858 1.34211 1.76831 1.30637 1.23088 0.99252 0.91181 0.85603 0.86729 1.22062 0.92581 0.91055 0.92884 1.44269 1.54464 1.07794 1.26571 1.19076 1.21154 0.96486 0.98218 0.90339 1.24787 1.00287 0.96122 0.99386 1.69864 1.42130 1.05023 1.40198 0.86073 0.78835 0.77950 0.82662 1.21700 1.21627 1.20633 1.21813 0.99033 0.89338 0.90049 1.21661 0.93416 0.99688 0.84514 0.90856 1.21587 0.92321 0.89937 0.98956 0.93921 0.89328 0.93782 0.91802 0.91761 0.82275 0.81571 0.90020 0.91263 0.92156 0.87660 0.88296 0.96060 0.93729 0.94805 0.92072 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.98 10.69 -35.23 -0.38 -4.36 16 3 C 0.11 0.91 6.08 36.00 0.22 1.13 16 4 C -0.15 -1.57 5.52 -104.54 -0.58 -2.15 16 5 C 0.14 1.35 10.85 -17.47 -0.19 1.16 16 6 N -0.49 -5.57 10.35 -12.91 -0.13 -5.70 16 7 C 0.13 1.55 8.99 -17.13 -0.15 1.39 16 8 C -0.18 -2.39 4.83 -104.82 -0.51 -2.89 16 9 C 0.55 9.28 6.72 -12.33 -0.08 9.20 16 10 O -0.51 -10.15 13.95 5.32 0.07 -10.07 16 11 N -0.58 -9.52 3.09 -170.11 -0.53 -10.04 16 12 C 0.07 0.97 4.89 -5.38 -0.03 0.95 16 13 C 0.06 0.84 6.74 36.63 0.25 1.08 16 14 O -0.37 -6.43 10.25 -34.35 -0.35 -6.78 16 15 C 0.07 1.31 3.91 -26.26 -0.10 1.21 16 16 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 17 C 0.14 3.41 5.26 -3.21 -0.02 3.39 16 18 N -0.60 -15.84 3.39 -171.41 -0.58 -16.42 16 19 C -0.22 -6.32 10.25 -15.06 -0.15 -6.47 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 22 N -0.92 -27.12 10.18 55.49 0.56 -26.55 16 23 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.12 2.79 6.05 -3.42 -0.02 2.77 16 28 C 0.11 2.08 3.34 -68.66 -0.23 1.85 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 C 0.00 -0.02 9.51 -38.87 -0.37 -0.39 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.17 1.65 5.69 -52.49 -0.30 1.35 16 38 H 0.08 1.02 6.38 -51.93 -0.33 0.69 16 39 H 0.07 0.72 6.25 -51.93 -0.32 0.40 16 40 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.10 2.72 6.25 -51.93 -0.32 2.39 16 43 H 0.02 0.57 6.48 -51.93 -0.34 0.23 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.49 5.16 -51.92 -0.27 1.22 16 47 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -34.27 370.58 -8.14 -42.41 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.42 Total: 1.37 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -0.95 Total: 13.16 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.68 Total: -58.72 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.65 Total: -21.22 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.27 -8.14 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083108630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.903 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds