Wall clock time and date at job start Wed Apr 1 2020 04:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00400 * 2 1 4 4 C 1.50694 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.38359 * 120.34746 * 90.00246 * 4 3 2 6 6 N 1.31926 * 121.07702 * 180.02562 * 5 4 3 7 7 C 1.31685 * 121.88479 * 0.02562 * 6 5 4 8 8 C 1.39527 * 120.56805 * 359.97438 * 7 6 5 9 9 C 1.47837 * 120.56294 * 180.02562 * 8 7 6 10 10 O 1.21546 * 120.00103 * 137.88436 * 9 8 7 11 11 N 1.34773 * 120.00029 * 317.88505 * 9 8 7 12 12 C 1.44970 * 117.32177 * 355.79669 * 11 9 8 13 13 C 1.51971 * 111.87883 * 203.65937 * 12 11 9 14 14 O 1.41319 * 111.54333 * 319.32512 * 13 12 11 15 15 C 1.40784 * 118.40179 * 56.93818 * 14 13 12 16 16 H 1.08993 * 109.35552 * 188.31335 * 15 14 13 17 17 C 1.54202 * 110.22689 * 67.70237 * 15 14 13 18 18 N 1.46867 * 106.39724 * 210.33812 * 17 15 14 19 19 C 1.36945 * 125.36750 * 197.82074 * 18 17 15 20 20 H 1.07999 * 119.99704 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99851 * 0.03088 * 19 18 17 22 22 N 1.31621 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47578 * 89.99352 * 23 21 19 25 25 H 1.48497 * 109.47227 * 209.99734 * 23 21 19 26 26 H 1.48509 * 109.47038 * 329.99628 * 23 21 19 27 27 C 1.46785 * 109.27224 * 17.84165 * 18 17 15 28 28 C 1.44542 * 117.32592 * 175.77300 * 11 9 8 29 29 H 1.08994 * 109.49003 * 285.90387 * 28 11 9 30 30 C 1.38351 * 120.35172 * 270.30204 * 4 3 2 31 31 H 1.09001 * 109.47163 * 60.00151 * 1 2 3 32 32 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46981 * 300.00099 * 1 2 3 34 34 H 1.08997 * 109.47182 * 59.99886 * 3 2 1 35 35 H 1.09003 * 109.46864 * 300.00123 * 3 2 1 36 36 H 1.07997 * 119.46115 * 0.03843 * 5 4 3 37 37 H 1.07999 * 119.72259 * 179.97438 * 7 6 5 38 38 H 1.08998 * 108.99709 * 324.27938 * 12 11 9 39 39 H 1.08997 * 108.99680 * 83.04317 * 12 11 9 40 40 H 1.08999 * 109.06731 * 79.86107 * 13 12 11 41 41 H 1.09004 * 109.06360 * 198.79780 * 13 12 11 42 42 H 1.09005 * 110.06983 * 91.10888 * 17 15 14 43 43 H 1.08999 * 110.12093 * 329.60002 * 17 15 14 44 44 H 0.97003 * 119.99686 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.83648 * 239.35875 * 27 18 17 46 46 H 1.09008 * 109.82878 * 118.38863 * 27 18 17 47 47 H 1.08001 * 120.85856 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 6 4.2099 1.1309 -1.1931 6 7 5.5249 1.0262 -1.2093 7 6 6.2319 0.9692 -0.0998 8 6 5.6038 1.0191 1.1451 9 6 6.3977 0.9557 2.3907 10 8 6.1244 1.6855 3.3234 11 7 7.4246 0.0887 2.4919 12 6 7.6414 -0.8185 1.3820 13 6 8.3904 -2.0693 1.8110 14 8 9.4276 -1.7663 2.7218 15 6 9.0974 -1.0911 3.9122 16 1 10.0123 -0.8033 4.4300 17 6 8.2500 -2.0013 4.8240 18 7 7.3708 -1.1128 5.5951 19 6 6.7125 -1.4534 6.7466 20 1 6.0851 -0.7288 7.2444 21 6 6.8516 -2.7298 7.2740 22 7 7.6159 -3.6130 6.6671 23 14 5.9531 -3.1947 8.8443 24 1 4.6180 -3.7494 8.5051 25 1 6.7405 -4.2152 9.5816 26 1 5.7864 -1.9886 9.6947 27 6 7.3085 0.1976 4.9368 28 6 8.2197 0.1398 3.6978 29 1 8.8583 1.0228 3.6752 30 6 4.2084 1.1250 1.1948 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6887 1.8463 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.6689 1.1743 -2.1268 37 1 7.3071 0.8831 -0.1538 38 1 6.6762 -1.1077 0.9665 39 1 8.2183 -0.3058 0.6123 40 1 7.6909 -2.7585 2.2841 41 1 8.8186 -2.5475 0.9300 42 1 8.8974 -2.5633 5.4973 43 1 7.6539 -2.6860 4.2207 44 1 7.7129 -4.5051 7.0355 45 1 7.6608 0.9713 5.6190 46 1 6.2836 0.4101 4.6324 47 1 3.6891 1.1609 2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083108630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:35 Heat of formation + Delta-G solvation = -44.844479 kcal Electronic energy + Delta-G solvation = -31653.948678 eV Core-core repulsion = 27417.324201 eV Total energy + Delta-G solvation = -4236.624477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.55674 -41.21118 -39.69821 -38.72026 -37.69832 -36.36063 -34.50815 -34.11863 -33.01186 -31.72148 -29.63355 -29.14832 -28.45841 -26.78620 -26.52472 -25.45432 -24.75673 -23.69653 -22.68813 -21.47328 -20.20225 -19.22927 -18.66025 -18.39080 -18.04179 -17.68919 -17.40680 -17.16147 -16.96555 -16.52127 -16.38267 -16.26771 -15.83249 -15.62778 -15.54447 -15.22539 -14.80695 -14.55264 -14.30632 -14.20095 -13.97141 -13.87632 -13.59661 -13.34533 -13.09306 -12.98501 -12.87144 -12.83737 -12.39494 -12.34704 -12.20447 -12.12205 -11.90054 -11.76661 -11.17632 -11.00388 -10.79800 -10.75987 -10.65444 -10.43467 -10.15344 -9.69041 -8.92274 -7.86040 -5.28109 -0.41680 -0.01641 1.41183 1.42960 1.44151 1.53665 1.69653 2.43827 2.47914 2.70926 2.98333 3.11614 3.26930 3.35322 3.47663 3.65239 3.66584 3.70473 3.74141 3.81220 3.87042 3.95730 4.04374 4.08287 4.31925 4.33624 4.35552 4.45702 4.48987 4.53238 4.54490 4.60649 4.64939 4.79290 4.87245 4.88256 4.96675 4.99778 5.03956 5.35739 5.41566 5.45793 5.51399 5.65709 6.04791 6.15420 6.18469 6.36233 6.70544 6.89328 7.05361 7.70502 8.31617 9.18267 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003508 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.547414 B = 7980.400967 C = 9629.027408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.106 3.894 4 C -0.148 4.148 5 C 0.144 3.856 6 N -0.492 5.492 7 C 0.143 3.857 8 C -0.193 4.193 9 C 0.553 3.447 10 O -0.554 6.554 11 N -0.584 5.584 12 C 0.072 3.928 13 C 0.051 3.949 14 O -0.368 6.368 15 C 0.086 3.914 16 H 0.129 0.871 17 C 0.149 3.851 18 N -0.621 5.621 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.270 1.270 27 C 0.123 3.877 28 C 0.122 3.878 29 H 0.096 0.904 30 C -0.017 4.017 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.195 0.805 37 H 0.187 0.813 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.029 0.971 41 H 0.151 0.849 42 H 0.065 0.935 43 H -0.008 1.008 44 H 0.249 0.751 45 H 0.028 0.972 46 H 0.044 0.956 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 9.309 -21.124 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.030 3.970 4 C -0.150 4.150 5 C -0.012 4.012 6 N -0.200 5.200 7 C -0.014 4.014 8 C -0.198 4.198 9 C 0.342 3.658 10 O -0.433 6.433 11 N -0.316 5.316 12 C -0.050 4.050 13 C -0.025 4.025 14 O -0.285 6.285 15 C 0.027 3.973 16 H 0.146 0.854 17 C 0.024 3.976 18 N -0.349 5.349 19 C -0.375 4.375 20 H 0.092 0.908 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.213 1.213 26 H -0.195 1.195 27 C -0.002 4.002 28 C 0.018 3.982 29 H 0.114 0.886 30 C -0.044 4.044 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.212 0.788 37 H 0.203 0.797 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.047 0.953 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.508 9.242 -21.353 24.160 hybrid contribution -1.490 -0.267 2.382 2.822 sum -7.998 8.975 -18.971 22.459 Atomic orbital electron populations 1.22946 0.79008 1.03786 1.01320 1.87936 1.21768 1.28048 1.95708 1.21354 0.87122 0.85273 1.03292 1.20747 0.97111 1.03715 0.93406 1.23431 0.89670 0.89655 0.98473 1.67904 1.08535 1.13394 1.30144 1.23514 1.01670 0.90721 0.85537 1.20800 0.95089 1.09289 0.94627 1.18631 0.79859 0.80170 0.87140 1.90748 1.69068 1.43749 1.39758 1.46698 1.30808 1.35718 1.18390 1.22194 1.02481 0.91795 0.88501 1.22568 0.90799 0.95018 0.94150 1.86870 1.35093 1.76549 1.29941 1.22767 0.98740 0.90130 0.85705 0.85356 1.21808 0.91888 0.91414 0.92533 1.44528 1.54581 1.09353 1.26467 1.19381 1.21732 0.96917 0.99425 0.90751 1.25622 1.01173 0.95958 1.02524 1.70107 1.43029 1.04982 1.41399 0.85048 0.77432 0.77749 0.78907 1.21439 1.21322 1.19526 1.21845 0.99185 0.87547 0.91624 1.21411 0.92753 1.00114 0.83964 0.88630 1.21642 0.92397 0.90786 0.99530 0.91779 0.89105 0.93457 0.91626 0.88552 0.78840 0.79678 0.89226 0.87116 0.95291 0.83138 0.91741 0.99035 0.94141 0.95414 0.93802 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.94 10.69 -148.98 -1.59 -9.53 16 3 C 0.11 1.58 6.08 71.23 0.43 2.01 16 4 C -0.15 -2.84 5.52 -19.81 -0.11 -2.95 16 5 C 0.14 2.41 10.85 84.71 0.92 3.33 16 6 N -0.49 -9.68 10.35 -194.75 -2.01 -11.70 16 7 C 0.14 2.96 8.99 85.03 0.76 3.72 16 8 C -0.19 -5.09 4.83 -19.99 -0.10 -5.19 16 9 C 0.55 18.59 6.72 86.78 0.58 19.17 16 10 O -0.55 -22.76 13.95 -3.86 -0.05 -22.81 16 11 N -0.58 -18.77 3.09 -810.40 -2.50 -21.28 16 12 C 0.07 1.74 4.89 86.33 0.42 2.16 16 13 C 0.05 1.40 6.74 71.64 0.48 1.88 16 14 O -0.37 -12.35 10.25 -145.84 -1.49 -13.84 16 15 C 0.09 3.33 3.91 30.90 0.12 3.45 16 16 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 17 C 0.15 7.61 5.26 86.72 0.46 8.06 16 18 N -0.62 -34.11 3.39 -696.22 -2.36 -36.47 16 19 C -0.25 -14.61 10.25 84.03 0.86 -13.75 16 20 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.06 -3.50 5.48 84.86 0.47 -3.04 16 22 N -0.95 -57.58 10.18 21.65 0.22 -57.36 16 23 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.12 5.80 6.05 86.63 0.52 6.32 16 28 C 0.12 4.56 3.34 45.56 0.15 4.71 16 29 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 30 C -0.02 -0.43 9.51 22.73 0.22 -0.22 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.93 8.09 -2.39 -0.02 0.92 16 35 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.19 2.97 5.69 -2.91 -0.02 2.95 16 38 H 0.09 2.06 6.38 -2.39 -0.02 2.04 16 39 H 0.11 1.82 6.25 -2.39 -0.01 1.81 16 40 H 0.03 0.97 6.73 -2.39 -0.02 0.96 16 41 H 0.15 2.75 8.14 -2.38 -0.02 2.73 16 42 H 0.06 3.72 6.25 -2.38 -0.01 3.71 16 43 H -0.01 -0.46 6.48 -2.39 -0.02 -0.48 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 2.25 5.16 -2.38 -0.01 2.24 16 47 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -78.54 370.58 0.67 -77.87 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.00 Total: 14.71 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 7.44 Total: 31.24 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.66 Total: -126.80 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -3.14 Total: -46.18 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -78.54 0.67 -77.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083108630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.024 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds