Wall clock time and date at job start Wed Apr 1 2020 04:32:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99763 * 2 1
4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1
5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1
7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1
9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1
10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2
11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7
12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9
13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10
14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11
15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12
16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13
17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13
18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14
19 19 C 1.53004 * 109.47044 * 180.02562 * 18 17 15
20 20 C 1.52995 * 109.46571 * 180.02562 * 19 18 17
21 21 C 1.53011 * 109.46712 * 179.97438 * 20 19 18
22 22 S 1.81399 * 109.46683 * 179.97438 * 21 20 19
23 23 N 1.65608 * 104.44753 * 180.02562 * 22 21 20
24 24 O 1.42099 * 110.54495 * 291.61892 * 22 21 20
25 25 O 1.42096 * 110.54569 * 68.37925 * 22 21 20
26 26 C 1.53781 * 113.61305 * 203.46713 * 10 9 7
27 27 H 0.96996 * 120.00281 * 0.02562 * 1 2 3
28 28 H 0.96995 * 120.00062 * 359.97438 * 9 7 2
29 29 H 1.09002 * 112.84935 * 334.66194 * 10 9 7
30 30 H 1.08992 * 113.61675 * 254.61383 * 11 10 9
31 31 H 1.09000 * 113.60973 * 25.51671 * 11 10 9
32 32 H 1.08996 * 113.68970 * 89.12734 * 12 11 10
33 33 H 1.08997 * 109.47064 * 32.50151 * 13 12 11
34 34 H 1.09006 * 109.47182 * 152.49563 * 13 12 11
35 35 H 0.96996 * 119.99355 * 359.97438 * 14 13 12
36 36 H 1.09005 * 109.47018 * 300.00068 * 17 15 14
37 37 H 1.09006 * 109.47329 * 59.99263 * 17 15 14
38 38 H 1.09005 * 109.46587 * 299.99693 * 18 17 15
39 39 H 1.08995 * 109.46937 * 59.99982 * 18 17 15
40 40 H 1.09000 * 109.46833 * 299.99650 * 19 18 17
41 41 H 1.08997 * 109.47355 * 59.99617 * 19 18 17
42 42 H 1.09000 * 109.47204 * 299.99359 * 20 19 18
43 43 H 1.08997 * 109.47646 * 59.99731 * 20 19 18
44 44 H 1.09000 * 109.46944 * 299.99740 * 21 20 19
45 45 H 1.08995 * 109.47046 * 60.00169 * 21 20 19
46 46 H 0.96999 * 119.99598 * 0.02562 * 23 22 21
47 47 H 0.96997 * 119.99988 * 180.02562 * 23 22 21
48 48 H 1.08999 * 113.61567 * 334.48111 * 26 10 9
49 49 H 1.08998 * 113.61196 * 105.38466 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2852 2.7464 -0.0006
6 1 3.1040 1.6965 1.2126
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0582 -3.6568 0.0005
11 6 2.0328 -4.3828 1.3560
12 6 1.8625 -5.6908 0.5602
13 6 0.8750 -6.6712 1.1963
14 7 1.5802 -7.5166 2.1628
15 6 0.9070 -8.4609 2.8494
16 8 -0.2827 -8.6106 2.6675
17 6 1.6323 -9.3301 3.8441
18 6 0.6448 -10.3106 4.4801
19 6 1.3812 -11.1927 5.4905
20 6 0.3938 -12.1735 6.1259
21 6 1.1302 -13.0560 7.1358
22 16 -0.0406 -14.2185 7.8898
23 7 0.8771 -15.1006 8.9491
24 8 -0.9650 -13.5277 8.7190
25 8 -0.4842 -15.1706 6.9328
26 6 1.2469 -4.8365 -0.5606
27 1 -0.4850 0.8400 -0.0004
28 1 0.3557 -2.3881 0.0005
29 1 3.0560 -3.5693 -0.4293
30 1 2.9742 -4.3216 1.9018
31 1 1.1688 -4.1300 1.9705
32 1 2.8060 -6.1607 0.2828
33 1 0.0882 -6.1151 1.7060
34 1 0.4334 -7.2968 0.4205
35 1 2.5317 -7.3971 2.3080
36 1 2.4196 -9.8859 3.3348
37 1 2.0731 -8.7043 4.6201
38 1 -0.1422 -9.7545 4.9895
39 1 0.2038 -10.9365 3.7044
40 1 2.1684 -11.7488 4.9814
41 1 1.8220 -10.5665 6.2661
42 1 -0.3938 -11.6178 6.6349
43 1 -0.0467 -12.7997 5.3500
44 1 1.9175 -13.6118 6.6265
45 1 1.5709 -12.4302 7.9118
46 1 1.8257 -14.9180 9.0375
47 1 0.4661 -15.7997 9.4812
48 1 0.1684 -4.7076 -0.4690
49 1 1.5543 -5.1413 -1.5609
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001101085152.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:32:32
Heat of formation + Delta-G solvation = -107.670999 kcal
Electronic energy + Delta-G solvation = -26663.545900 eV
Core-core repulsion = 22559.641012 eV
Total energy + Delta-G solvation = -4103.904888 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-39.91301 -38.50923 -37.49933 -36.68378 -36.40184 -34.69151 -33.76529 -33.31749
-32.93987 -30.33399 -28.68575 -26.85701 -25.11206 -24.05600 -23.30416 -21.69608
-21.04959 -20.41578 -19.94062 -19.04958 -18.16218 -17.83147 -17.16115 -16.94511
-16.92109 -16.22946 -16.09520 -15.86525 -15.46569 -14.89649 -14.78230 -14.26129
-14.03791 -13.98165 -13.55621 -13.37041 -13.01208 -12.88465 -12.66034 -12.60963
-12.55603 -12.44293 -12.20450 -11.91648 -11.82903 -11.61907 -11.61732 -11.38499
-11.24840 -11.02284 -11.01958 -11.01317 -10.83642 -10.55497 -10.27666 -10.18135
-9.83783 -9.83427 -9.49040 -9.03774 -8.87653 -6.97798 -5.79380 -3.08503
-0.33140 2.30144 2.58073 3.05829 3.15274 3.41953 3.46386 3.47734
3.68582 3.83661 4.27081 4.31635 4.53379 4.57051 4.58618 4.68991
4.88126 4.94311 4.96260 5.02397 5.08629 5.20926 5.29553 5.29789
5.34641 5.38946 5.45263 5.48448 5.50129 5.79763 5.82184 5.84037
5.92229 5.96971 6.07705 6.24340 6.29583 6.34377 6.42371 6.44611
6.57149 6.80757 7.09653 7.45160 7.67037 8.17378 8.39137 9.50056
10.08381 10.42547 11.42919
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028214 B = 0.001179 C = 0.001163
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.159814 B =23744.225519 C =24077.046270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.012 4.012
3 Si 0.908 3.092
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.246 4.246
8 H 0.070 0.930
9 N -0.713 5.713
10 C 0.165 3.835
11 C -0.160 4.160
12 C -0.127 4.127
13 C 0.131 3.869
14 N -0.727 5.727
15 C 0.506 3.494
16 O -0.544 6.544
17 C -0.141 4.141
18 C -0.110 4.110
19 C -0.111 4.111
20 C -0.115 4.115
21 C -0.619 4.619
22 S 2.611 3.389
23 N -1.254 6.254
24 O -0.962 6.962
25 O -0.963 6.963
26 C -0.142 4.142
27 H 0.256 0.744
28 H 0.385 0.615
29 H 0.074 0.926
30 H 0.053 0.947
31 H 0.078 0.922
32 H 0.087 0.913
33 H 0.069 0.931
34 H 0.063 0.937
35 H 0.400 0.600
36 H 0.092 0.908
37 H 0.093 0.907
38 H 0.074 0.926
39 H 0.073 0.927
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.084 0.916
43 H 0.083 0.917
44 H 0.136 0.864
45 H 0.136 0.864
46 H 0.412 0.588
47 H 0.420 0.580
48 H 0.081 0.919
49 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.458 -31.756 15.863 36.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.208 4.208
3 Si 0.738 3.262
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.377 4.377
8 H 0.088 0.912
9 N -0.351 5.351
10 C 0.053 3.947
11 C -0.201 4.201
12 C -0.146 4.146
13 C 0.008 3.992
14 N -0.378 5.378
15 C 0.293 3.707
16 O -0.421 6.421
17 C -0.181 4.181
18 C -0.148 4.148
19 C -0.150 4.150
20 C -0.154 4.154
21 C -0.749 4.749
22 S 2.703 3.297
23 N -0.927 5.927
24 O -0.951 6.951
25 O -0.952 6.952
26 C -0.182 4.182
27 H 0.066 0.934
28 H 0.219 0.781
29 H 0.092 0.908
30 H 0.072 0.928
31 H 0.096 0.904
32 H 0.106 0.894
33 H 0.087 0.913
34 H 0.082 0.918
35 H 0.234 0.766
36 H 0.110 0.890
37 H 0.111 0.889
38 H 0.093 0.907
39 H 0.092 0.908
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.102 0.898
43 H 0.102 0.898
44 H 0.154 0.846
45 H 0.155 0.845
46 H 0.238 0.762
47 H 0.249 0.751
48 H 0.099 0.901
49 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 6.606 -31.670 15.424 35.840
hybrid contribution 1.670 1.021 0.373 1.992
sum 8.276 -30.648 15.797 35.459
Atomic orbital electron populations
1.69650 1.05150 1.25893 1.57305 1.24767 0.95507 0.97776 1.02763
0.86267 0.78540 0.83518 0.77837 1.21229 1.21658 1.21254 1.19257
0.91035 0.84272 1.43171 0.91163 1.42405 1.05759 0.99867 1.87077
1.21524 0.95233 0.85090 0.92852 1.23991 1.01240 0.94806 1.00108
1.22685 0.98420 0.94484 0.99054 1.21433 0.95032 0.91855 0.90910
1.46101 1.12841 1.36289 1.42574 1.20706 0.87773 0.80673 0.81584
1.90717 1.15397 1.69628 1.66363 1.21676 0.99707 0.98270 0.98421
1.21386 0.97796 0.97092 0.98491 1.21559 0.97735 0.97075 0.98600
1.21362 0.98813 0.97875 0.97342 1.30406 1.16903 1.15720 1.11844
1.04838 0.74885 0.75408 0.74556 1.53165 1.22955 1.54430 1.62106
1.93631 1.59717 1.75467 1.66308 1.93627 1.79184 1.59220 1.63167
1.23426 1.00927 0.97074 0.96744 0.93375 0.78059 0.90770 0.92812
0.90364 0.89432 0.91273 0.91849 0.76647 0.88979 0.88856 0.90720
0.90801 0.91322 0.91244 0.89766 0.89818 0.84580 0.84549 0.76246
0.75063 0.90091 0.91995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16
2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16
3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16
4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16
8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
9 N -0.71 -17.70 5.41 -52.64 -0.28 -17.99 16
10 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16
11 C -0.16 -2.59 7.45 -25.77 -0.19 -2.78 16
12 C -0.13 -1.64 3.76 -89.67 -0.34 -1.98 16
13 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16
14 N -0.73 -7.59 5.56 -60.29 -0.33 -7.92 16
15 C 0.51 5.75 7.83 -10.99 -0.09 5.67 16
16 O -0.54 -8.60 15.98 5.56 0.09 -8.51 16
17 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16
18 C -0.11 -0.78 4.50 -26.73 -0.12 -0.90 16
19 C -0.11 -0.49 5.21 -26.73 -0.14 -0.63 16
20 C -0.11 -0.53 5.22 -26.73 -0.14 -0.67 16
21 C -0.62 -1.30 6.09 37.16 0.23 -1.07 16
22 S 2.61 13.03 5.97 -107.50 -0.64 12.39 16
23 N -1.25 -2.24 9.43 60.35 0.57 -1.67 16
24 O -0.96 -9.01 18.10 -57.54 -1.04 -10.05 16
25 O -0.96 -8.88 18.10 -57.54 -1.04 -9.92 16
26 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16
27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
28 H 0.39 10.22 7.91 -40.82 -0.32 9.89 16
29 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16
30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16
32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
33 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16
34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.40 3.06 8.47 -40.82 -0.35 2.72 16
36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16
39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16
40 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
41 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.14 -0.01 8.14 -51.92 -0.42 -0.44 16
45 H 0.14 0.01 8.14 -51.93 -0.42 -0.42 16
46 H 0.41 -0.56 8.83 -34.47 -0.30 -0.86 16
47 H 0.42 0.60 8.96 -34.48 -0.31 0.29 16
48 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16
49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
LS Contribution 417.24 15.07 6.29 6.29
Total: -1.00 -40.03 417.24 -10.81 -50.84
By element:
Atomic # 1 Polarization: 13.94 SS G_CDS: -8.40 Total: 5.54 kcal
Atomic # 6 Polarization: -7.05 SS G_CDS: -1.71 Total: -8.76 kcal
Atomic # 7 Polarization: -55.64 SS G_CDS: 0.67 Total: -54.96 kcal
Atomic # 8 Polarization: -26.49 SS G_CDS: -1.99 Total: -28.49 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal
Atomic # 16 Polarization: 13.03 SS G_CDS: -0.64 Total: 12.39 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -40.03 -10.81 -50.84 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101085152.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.833 kcal
(2) G-P(sol) polarization free energy of solvation -40.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds