Wall clock time and date at job start Wed Apr 1 2020 04:32:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 119.99763 * 2 1
4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1
5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1
7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1
9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1
10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2
11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7
12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9
13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10
14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11
15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12
16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13
17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13
18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14
19 19 C 1.53004 * 109.47044 * 180.02562 * 18 17 15
20 20 C 1.52995 * 109.46571 * 180.02562 * 19 18 17
21 21 C 1.53011 * 109.46712 * 179.97438 * 20 19 18
22 22 S 1.81399 * 109.46683 * 179.97438 * 21 20 19
23 23 N 1.65608 * 104.44753 * 180.02562 * 22 21 20
24 24 O 1.42099 * 110.54495 * 291.61892 * 22 21 20
25 25 O 1.42096 * 110.54569 * 68.37925 * 22 21 20
26 26 C 1.53781 * 113.61305 * 203.46713 * 10 9 7
27 27 H 0.96996 * 120.00281 * 0.02562 * 1 2 3
28 28 H 0.96995 * 120.00062 * 359.97438 * 9 7 2
29 29 H 1.09002 * 112.84935 * 334.66194 * 10 9 7
30 30 H 1.08992 * 113.61675 * 254.61383 * 11 10 9
31 31 H 1.09000 * 113.60973 * 25.51671 * 11 10 9
32 32 H 1.08996 * 113.68970 * 89.12734 * 12 11 10
33 33 H 1.08997 * 109.47064 * 32.50151 * 13 12 11
34 34 H 1.09006 * 109.47182 * 152.49563 * 13 12 11
35 35 H 0.96996 * 119.99355 * 359.97438 * 14 13 12
36 36 H 1.09005 * 109.47018 * 300.00068 * 17 15 14
37 37 H 1.09006 * 109.47329 * 59.99263 * 17 15 14
38 38 H 1.09005 * 109.46587 * 299.99693 * 18 17 15
39 39 H 1.08995 * 109.46937 * 59.99982 * 18 17 15
40 40 H 1.09000 * 109.46833 * 299.99650 * 19 18 17
41 41 H 1.08997 * 109.47355 * 59.99617 * 19 18 17
42 42 H 1.09000 * 109.47204 * 299.99359 * 20 19 18
43 43 H 1.08997 * 109.47646 * 59.99731 * 20 19 18
44 44 H 1.09000 * 109.46944 * 299.99740 * 21 20 19
45 45 H 1.08995 * 109.47046 * 60.00169 * 21 20 19
46 46 H 0.96999 * 119.99598 * 0.02562 * 23 22 21
47 47 H 0.96997 * 119.99988 * 180.02562 * 23 22 21
48 48 H 1.08999 * 113.61567 * 334.48111 * 26 10 9
49 49 H 1.08998 * 113.61196 * 105.38466 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2852 2.7464 -0.0006
6 1 3.1040 1.6965 1.2126
7 6 2.0104 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0582 -3.6568 0.0005
11 6 2.0328 -4.3828 1.3560
12 6 1.8625 -5.6908 0.5602
13 6 0.8750 -6.6712 1.1963
14 7 1.5802 -7.5166 2.1628
15 6 0.9070 -8.4609 2.8494
16 8 -0.2827 -8.6106 2.6675
17 6 1.6323 -9.3301 3.8441
18 6 0.6448 -10.3106 4.4801
19 6 1.3812 -11.1927 5.4905
20 6 0.3938 -12.1735 6.1259
21 6 1.1302 -13.0560 7.1358
22 16 -0.0406 -14.2185 7.8898
23 7 0.8771 -15.1006 8.9491
24 8 -0.9650 -13.5277 8.7190
25 8 -0.4842 -15.1706 6.9328
26 6 1.2469 -4.8365 -0.5606
27 1 -0.4850 0.8400 -0.0004
28 1 0.3557 -2.3881 0.0005
29 1 3.0560 -3.5693 -0.4293
30 1 2.9742 -4.3216 1.9018
31 1 1.1688 -4.1300 1.9705
32 1 2.8060 -6.1607 0.2828
33 1 0.0882 -6.1151 1.7060
34 1 0.4334 -7.2968 0.4205
35 1 2.5317 -7.3971 2.3080
36 1 2.4196 -9.8859 3.3348
37 1 2.0731 -8.7043 4.6201
38 1 -0.1422 -9.7545 4.9895
39 1 0.2038 -10.9365 3.7044
40 1 2.1684 -11.7488 4.9814
41 1 1.8220 -10.5665 6.2661
42 1 -0.3938 -11.6178 6.6349
43 1 -0.0467 -12.7997 5.3500
44 1 1.9175 -13.6118 6.6265
45 1 1.5709 -12.4302 7.9118
46 1 1.8257 -14.9180 9.0375
47 1 0.4661 -15.7997 9.4812
48 1 0.1684 -4.7076 -0.4690
49 1 1.5543 -5.1413 -1.5609
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001101085152.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:32:31
Heat of formation + Delta-G solvation = -141.642979 kcal
Electronic energy + Delta-G solvation = -26665.019036 eV
Core-core repulsion = 22559.641012 eV
Total energy + Delta-G solvation = -4105.378024 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-40.88662 -39.78741 -38.03862 -37.12034 -36.92870 -36.00830 -34.97053 -33.98744
-33.46338 -32.16743 -29.51202 -27.78191 -26.45833 -25.79401 -24.01020 -22.42288
-22.05627 -21.34092 -20.41119 -20.30448 -19.04437 -18.48612 -18.17229 -17.85929
-17.32644 -17.17727 -16.83514 -16.55715 -16.24194 -16.22620 -15.93685 -15.47665
-15.14552 -14.90245 -14.59541 -14.36451 -14.19624 -13.43007 -13.41580 -13.24223
-13.20669 -13.12831 -13.08733 -13.02484 -12.91656 -12.89811 -12.62687 -12.58551
-12.24060 -12.08097 -12.05305 -12.01282 -11.58665 -11.54880 -11.42455 -11.42048
-11.23418 -11.08719 -10.83720 -10.70698 -10.02608 -8.97429 -7.93978 -5.22634
-0.68475 1.47669 1.50760 1.56953 1.71759 2.01483 2.29009 2.57498
2.75277 3.37916 3.45976 3.52854 3.70249 3.76393 3.85375 3.90091
3.92716 4.01944 4.20336 4.26410 4.35334 4.39178 4.43747 4.53908
4.56861 4.60838 4.74952 4.77739 4.88612 4.92321 4.95624 4.98147
5.00172 5.07027 5.14274 5.23237 5.31420 5.37591 5.38094 5.45480
5.50889 5.55554 5.74754 6.28018 6.40455 6.64975 7.33453 7.35023
8.12051 8.33657 9.29438
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028214 B = 0.001179 C = 0.001163
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.159814 B =23744.225519 C =24077.046270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.973 5.973
2 C -0.079 4.079
3 Si 0.974 3.026
4 H -0.276 1.276
5 H -0.298 1.298
6 H -0.277 1.277
7 C -0.245 4.245
8 H 0.080 0.920
9 N -0.731 5.731
10 C 0.142 3.858
11 C -0.152 4.152
12 C -0.093 4.093
13 C 0.137 3.863
14 N -0.716 5.716
15 C 0.498 3.502
16 O -0.598 6.598
17 C -0.130 4.130
18 C -0.113 4.113
19 C -0.103 4.103
20 C -0.132 4.132
21 C -0.591 4.591
22 S 2.613 3.387
23 N -1.240 6.240
24 O -1.015 7.015
25 O -1.014 7.014
26 C -0.139 4.139
27 H 0.250 0.750
28 H 0.371 0.629
29 H 0.082 0.918
30 H 0.070 0.930
31 H 0.052 0.948
32 H 0.124 0.876
33 H 0.040 0.960
34 H 0.060 0.940
35 H 0.418 0.582
36 H 0.125 0.875
37 H 0.118 0.882
38 H 0.049 0.951
39 H 0.054 0.946
40 H 0.091 0.909
41 H 0.087 0.913
42 H 0.072 0.928
43 H 0.075 0.925
44 H 0.170 0.830
45 H 0.168 0.832
46 H 0.428 0.572
47 H 0.422 0.578
48 H 0.063 0.937
49 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.797 -33.042 16.517 39.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.624 5.624
2 C -0.271 4.271
3 Si 0.803 3.197
4 H -0.202 1.202
5 H -0.225 1.225
6 H -0.203 1.203
7 C -0.377 4.377
8 H 0.098 0.902
9 N -0.369 5.369
10 C 0.032 3.968
11 C -0.193 4.193
12 C -0.112 4.112
13 C 0.012 3.988
14 N -0.368 5.368
15 C 0.287 3.713
16 O -0.479 6.479
17 C -0.170 4.170
18 C -0.152 4.152
19 C -0.141 4.141
20 C -0.171 4.171
21 C -0.724 4.724
22 S 2.710 3.290
23 N -0.917 5.917
24 O -1.005 7.005
25 O -1.003 7.003
26 C -0.178 4.178
27 H 0.059 0.941
28 H 0.202 0.798
29 H 0.100 0.900
30 H 0.089 0.911
31 H 0.071 0.929
32 H 0.142 0.858
33 H 0.059 0.941
34 H 0.079 0.921
35 H 0.255 0.745
36 H 0.143 0.857
37 H 0.137 0.863
38 H 0.068 0.932
39 H 0.073 0.927
40 H 0.110 0.890
41 H 0.106 0.894
42 H 0.091 0.909
43 H 0.094 0.906
44 H 0.188 0.812
45 H 0.186 0.814
46 H 0.258 0.742
47 H 0.253 0.747
48 H 0.082 0.918
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 11.025 -33.031 16.111 38.369
hybrid contribution 0.381 1.369 0.145 1.429
sum 11.406 -31.662 16.256 37.374
Atomic orbital electron populations
1.69824 1.06793 1.26086 1.59683 1.25602 0.96324 1.01277 1.03848
0.85206 0.77161 0.79090 0.78281 1.20194 1.22487 1.20280 1.19718
0.91652 0.85389 1.40907 0.90195 1.42640 1.05320 1.01293 1.87617
1.21986 0.95619 0.83841 0.95331 1.23751 1.01012 0.96003 0.98493
1.22511 0.99437 0.92975 0.96280 1.21164 0.94599 0.91856 0.91159
1.45978 1.13622 1.35493 1.41726 1.21636 0.87346 0.80638 0.81689
1.90702 1.17996 1.71125 1.68063 1.21730 0.99590 0.97805 0.97837
1.21393 0.97836 0.97271 0.98660 1.21526 0.97523 0.96741 0.98327
1.21483 0.99312 0.98417 0.97877 1.30167 1.15723 1.14574 1.11976
1.04369 0.75372 0.75312 0.73988 1.52778 1.23737 1.53924 1.61286
1.93570 1.62869 1.76347 1.67667 1.93567 1.81057 1.61259 1.64429
1.23322 0.99678 0.96121 0.98686 0.94134 0.79758 0.90030 0.91117
0.92917 0.85763 0.94139 0.92133 0.74524 0.85679 0.86342 0.93186
0.92668 0.89026 0.89419 0.90944 0.90648 0.81177 0.81392 0.74191
0.74730 0.91791 0.90282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16
2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
3 Si 0.97 45.86 29.55 68.60 2.03 47.89 16
4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16
6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
7 C -0.24 -13.49 9.97 84.03 0.84 -12.65 16
8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16
9 N -0.73 -36.78 5.41 -320.44 -1.73 -38.51 16
10 C 0.14 5.26 4.47 45.52 0.20 5.46 16
11 C -0.15 -4.68 7.45 31.21 0.23 -4.45 16
12 C -0.09 -2.17 3.76 -10.18 -0.04 -2.21 16
13 C 0.14 3.34 5.51 86.38 0.48 3.82 16
14 N -0.72 -13.21 5.56 -463.06 -2.57 -15.79 16
15 C 0.50 10.59 7.83 87.66 0.69 11.28 16
16 O -0.60 -19.28 15.98 -3.04 -0.05 -19.32 16
17 C -0.13 -1.35 5.70 29.85 0.17 -1.18 16
18 C -0.11 -1.46 4.50 30.60 0.14 -1.32 16
19 C -0.10 -0.55 5.21 30.59 0.16 -0.39 16
20 C -0.13 -1.00 5.22 30.60 0.16 -0.84 16
21 C -0.59 -0.66 6.09 71.99 0.44 -0.22 16
22 S 2.61 25.20 5.97 -56.49 -0.34 24.87 16
23 N -1.24 -2.72 9.43 37.02 0.35 -2.37 16
24 O -1.02 -19.89 18.10 -127.65 -2.31 -22.20 16
25 O -1.01 -19.39 18.10 -127.65 -2.31 -21.70 16
26 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16
27 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16
28 H 0.37 20.40 7.91 -92.71 -0.73 19.67 16
29 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16
30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
31 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16
32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16
34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16
35 H 0.42 4.68 8.47 -92.71 -0.79 3.90 16
36 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16
37 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16
38 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16
39 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16
40 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16
41 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16
42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.17 -0.86 8.14 -2.39 -0.02 -0.88 16
45 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16
46 H 0.43 -2.28 8.83 -96.74 -0.85 -3.13 16
47 H 0.42 0.88 8.96 -96.74 -0.87 0.02 16
48 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16
49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
Total: -1.00 -92.56 417.24 -4.75 -97.31
By element:
Atomic # 1 Polarization: 22.81 SS G_CDS: -2.26 Total: 20.55 kcal
Atomic # 6 Polarization: -14.87 SS G_CDS: 4.16 Total: -10.71 kcal
Atomic # 7 Polarization: -113.00 SS G_CDS: -3.67 Total: -116.67 kcal
Atomic # 8 Polarization: -58.55 SS G_CDS: -4.67 Total: -63.22 kcal
Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal
Atomic # 16 Polarization: 25.20 SS G_CDS: -0.34 Total: 24.87 kcal
Total: -92.56 -4.75 -97.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101085152.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.333 kcal
(2) G-P(sol) polarization free energy of solvation -92.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds