Wall clock time and date at job start Wed Apr 1 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99839 * 2 1 4 4 C 1.53000 * 109.47051 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47235 * 64.99640 * 4 3 2 6 6 C 1.35926 * 117.00024 * 179.97438 * 5 4 3 7 7 C 1.38844 * 120.40464 * 359.97438 * 6 5 4 8 8 N 1.31879 * 121.00290 * 179.97438 * 7 6 5 9 9 C 1.31682 * 121.93912 * 0.03074 * 8 7 6 10 10 C 1.39524 * 120.69352 * 0.02562 * 9 8 7 11 11 C 1.47852 * 120.53513 * 179.97438 * 10 9 8 12 12 O 1.21552 * 119.99888 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99946 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00149 * 180.02562 * 13 11 10 15 15 H 1.08999 * 115.51191 * 9.58257 * 14 13 11 16 16 C 1.52998 * 117.44208 * 224.24608 * 14 13 11 17 17 H 1.09001 * 119.53865 * 4.11211 * 16 14 13 18 18 C 1.54389 * 118.12487 * 160.80836 * 16 14 13 19 19 N 1.48148 * 104.61736 * 87.18473 * 18 16 14 20 20 C 1.36934 * 127.83508 * 140.41615 * 19 18 16 21 21 H 1.08002 * 120.00377 * 344.91661 * 20 19 18 22 22 C 1.38815 * 119.99780 * 164.91165 * 20 19 18 23 23 N 1.31618 * 120.00051 * 350.66714 * 22 20 19 24 24 Si 1.86805 * 119.99875 * 170.66321 * 22 20 19 25 25 H 1.48498 * 109.46888 * 90.00420 * 24 22 20 26 26 H 1.48504 * 109.46856 * 210.00164 * 24 22 20 27 27 H 1.48501 * 109.46942 * 330.00221 * 24 22 20 28 28 C 1.51831 * 104.55273 * 320.14274 * 19 18 16 29 29 C 1.52996 * 117.44388 * 155.00465 * 14 13 11 30 30 H 1.09002 * 119.53746 * 355.87922 * 29 14 13 31 31 C 1.38841 * 120.40600 * 179.72771 * 6 5 4 32 32 H 1.09000 * 109.46693 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46933 * 300.00073 * 1 2 3 34 34 H 1.08993 * 109.47072 * 60.00257 * 1 2 3 35 35 H 1.08997 * 109.47077 * 59.99969 * 3 2 1 36 36 H 1.09002 * 109.47016 * 299.99777 * 3 2 1 37 37 H 1.08997 * 109.47273 * 304.99362 * 4 3 2 38 38 H 1.09001 * 109.46718 * 184.99816 * 4 3 2 39 39 H 1.08001 * 119.50372 * 0.02562 * 7 6 5 40 40 H 1.08003 * 119.65787 * 179.97438 * 9 8 7 41 41 H 0.96999 * 119.99856 * 0.02562 * 13 11 10 42 42 H 1.08990 * 110.40688 * 205.97153 * 18 16 14 43 43 H 1.09002 * 110.40671 * 328.40333 * 18 16 14 44 44 H 0.97002 * 120.00108 * 179.97438 * 23 22 20 45 45 H 1.09005 * 111.95032 * 281.19398 * 28 19 18 46 46 H 1.08998 * 110.53078 * 157.59445 * 28 19 18 47 47 H 1.08002 * 120.87640 * 359.97282 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3022 0.3988 -1.3841 7 6 6.1901 0.7936 -0.3924 8 7 7.4898 0.6233 -0.5372 9 6 8.0045 0.0764 -1.6188 10 6 7.1819 -0.3469 -2.6632 11 6 7.7636 -0.9601 -3.8764 12 8 7.0378 -1.3250 -4.7806 13 7 9.0985 -1.1134 -3.9801 14 6 9.6750 -1.7204 -5.1824 15 1 8.9823 -1.8715 -6.0102 16 6 10.7767 -2.7638 -4.9865 17 1 11.0511 -3.0728 -3.9779 18 6 11.0811 -3.7285 -6.1528 19 7 12.0709 -3.0071 -6.9862 20 6 13.1690 -3.5227 -7.6214 21 1 13.5354 -4.5034 -7.3562 22 6 13.8112 -2.7848 -8.6063 23 7 13.2650 -1.6764 -9.0596 24 14 15.4508 -3.3648 -9.2881 25 1 15.2154 -4.2521 -10.4553 26 1 16.2535 -2.1900 -9.7134 27 1 16.1868 -4.1133 -8.2377 28 6 11.5924 -1.5661 -6.9854 29 6 11.1211 -1.3613 -5.5295 30 1 11.6520 -0.6256 -4.9253 31 6 5.7968 -0.1877 -2.5413 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.6886 1.8464 0.8900 36 1 1.6886 1.8464 -0.8900 37 1 3.8515 0.5684 0.8410 38 1 3.9784 2.1767 0.0889 39 1 5.8106 1.2464 0.5117 40 1 9.0747 -0.0451 -1.6988 41 1 9.6777 -0.8218 -3.2586 42 1 11.5071 -4.6581 -5.7758 43 1 10.1759 -3.9292 -6.7261 44 1 13.7139 -1.1606 -9.7476 45 1 10.7652 -1.4111 -7.6781 46 1 12.4153 -0.8900 -7.2171 47 1 5.1304 -0.5090 -3.3282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115046070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:46 Heat of formation + Delta-G solvation = -7.894828 kcal Electronic energy + Delta-G solvation = -28757.231463 eV Core-core repulsion = 24522.209243 eV Total energy + Delta-G solvation = -4235.022220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22932 -39.86303 -38.89515 -38.17290 -37.76988 -34.50188 -33.01548 -32.71383 -31.54964 -30.36703 -29.86648 -27.14875 -26.95255 -25.97311 -25.01646 -23.79101 -23.26044 -21.77597 -20.74736 -20.36052 -19.23845 -18.85853 -17.67864 -17.41677 -17.24200 -16.92324 -16.63294 -16.12227 -16.06410 -15.86441 -15.33140 -14.96103 -14.71442 -14.47665 -13.99125 -13.77987 -13.59678 -13.44801 -13.28420 -13.07527 -12.78424 -12.73821 -12.20315 -12.15433 -12.14244 -11.60905 -11.57742 -11.47540 -11.01048 -10.82155 -10.49969 -10.41040 -10.28545 -10.23253 -10.14754 -10.05966 -9.72615 -9.66008 -9.22300 -8.93459 -8.74765 -8.39227 -6.87243 -5.78280 -3.11151 0.26426 0.86166 2.43864 2.64967 3.02397 3.13280 3.39639 3.45044 3.46916 3.50424 3.91608 4.09523 4.26547 4.29847 4.43313 4.44034 4.49024 4.53003 4.61019 4.67226 4.78159 4.83868 4.84400 4.95860 5.03763 5.12195 5.19455 5.33157 5.36370 5.48358 5.55249 5.67789 5.77675 5.88762 5.91905 6.08877 6.18606 6.51820 6.52389 6.69415 6.73228 6.74008 6.88929 7.29908 7.41163 7.45410 7.51704 7.70317 8.10827 8.15142 9.07070 9.73876 10.50308 11.36827 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.001554 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.656513 B =18011.823893 C =18375.862780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.056 3.944 5 O -0.297 6.297 6 C 0.076 3.924 7 C 0.035 3.965 8 N -0.450 5.450 9 C 0.096 3.904 10 C -0.139 4.139 11 C 0.564 3.436 12 O -0.526 6.526 13 N -0.688 5.688 14 C 0.093 3.907 15 H 0.134 0.866 16 C -0.181 4.181 17 H 0.104 0.896 18 C 0.158 3.842 19 N -0.598 5.598 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.185 3.815 29 C -0.176 4.176 30 H 0.103 0.897 31 C -0.049 4.049 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.399 0.601 42 H 0.052 0.948 43 H 0.027 0.973 44 H 0.254 0.746 45 H 0.033 0.967 46 H 0.092 0.908 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.829 9.007 22.610 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.015 4.015 4 C -0.019 4.019 5 O -0.210 6.210 6 C 0.028 3.972 7 C -0.123 4.123 8 N -0.158 5.158 9 C -0.064 4.064 10 C -0.144 4.144 11 C 0.350 3.650 12 O -0.403 6.403 13 N -0.337 5.337 14 C -0.012 4.012 15 H 0.152 0.848 16 C -0.202 4.202 17 H 0.122 0.878 18 C 0.031 3.969 19 N -0.323 5.323 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.061 3.939 29 C -0.197 4.197 30 H 0.121 0.879 31 C -0.076 4.076 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.234 0.766 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.663 8.830 22.288 32.312 hybrid contribution 0.455 0.029 -0.304 0.548 sum -21.209 8.859 21.984 31.806 Atomic orbital electron populations 1.22781 0.80519 1.03216 1.00055 1.87974 1.20086 1.26887 1.95438 1.22568 0.91133 0.86033 1.01731 1.22960 0.94308 0.98403 0.86231 1.86182 1.18669 1.76805 1.39305 1.19878 0.84133 0.97732 0.95432 1.23092 0.89177 1.01130 0.98898 1.67535 1.13244 1.11858 1.23191 1.22871 1.00297 0.94856 0.88338 1.20861 0.94048 1.02796 0.96702 1.17868 0.82342 0.78798 0.85990 1.90808 1.59862 1.49620 1.40003 1.45277 1.06261 1.61573 1.20569 1.21939 0.91044 0.99674 0.88561 0.84817 1.24403 1.02166 0.93247 1.00406 0.87766 1.21064 0.92757 0.93278 0.89764 1.46068 1.26225 1.02883 1.57117 1.19006 1.01621 1.01611 1.13074 0.90533 1.24863 0.99727 0.98252 0.97498 1.69882 1.38361 1.17013 1.31060 0.86131 0.83326 0.77497 0.78853 1.21494 1.21589 1.20617 1.21708 0.97984 0.87358 0.86889 1.24611 0.94574 0.98182 1.02369 0.87879 1.21015 0.94349 0.95878 0.96350 0.89313 0.93989 0.93764 0.90780 0.91808 0.90598 0.89943 0.82120 0.82027 0.76582 0.92932 0.95556 0.93572 0.94908 0.88949 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.02 10.67 -40.08 -0.43 -3.44 16 3 C 0.06 0.31 6.32 37.16 0.23 0.55 16 4 C 0.06 0.30 5.13 37.16 0.19 0.49 16 5 O -0.30 -2.75 10.11 -24.36 -0.25 -3.00 16 6 C 0.08 0.75 6.70 -39.13 -0.26 0.49 16 7 C 0.03 0.31 10.21 -17.31 -0.18 0.13 16 8 N -0.45 -4.65 10.34 -12.80 -0.13 -4.79 16 9 C 0.10 0.96 10.71 -17.14 -0.18 0.78 16 10 C -0.14 -1.62 5.89 -104.84 -0.62 -2.24 16 11 C 0.56 8.07 7.78 -12.33 -0.10 7.97 16 12 O -0.53 -9.49 15.99 5.32 0.09 -9.40 16 13 N -0.69 -9.09 5.52 -54.75 -0.30 -9.40 16 14 C 0.09 1.54 5.97 -67.93 -0.41 1.14 16 15 H 0.13 2.51 7.40 -51.93 -0.38 2.13 16 16 C -0.18 -3.16 7.06 -89.22 -0.63 -3.79 16 17 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 18 C 0.16 3.33 7.05 -2.41 -0.02 3.31 16 19 N -0.60 -15.26 3.45 -165.70 -0.57 -15.83 16 20 C -0.22 -6.25 10.36 -15.06 -0.16 -6.40 16 21 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 22 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 23 N -0.92 -26.74 10.84 55.49 0.60 -26.14 16 24 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.19 4.38 5.92 -0.29 0.00 4.38 16 29 C -0.18 -3.23 6.96 -89.22 -0.62 -3.85 16 30 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 31 C -0.05 -0.56 9.67 -38.72 -0.37 -0.94 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.36 7.68 -51.93 -0.40 -0.04 16 38 H 0.08 0.25 7.67 -51.93 -0.40 -0.15 16 39 H 0.16 0.91 6.30 -52.49 -0.33 0.58 16 40 H 0.16 1.22 6.42 -52.48 -0.34 0.89 16 41 H 0.40 4.03 6.89 -40.82 -0.28 3.75 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16 47 H 0.16 1.86 7.73 -52.49 -0.41 1.45 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -34.78 394.20 -8.83 -43.61 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.65 Total: 2.59 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.10 Total: 2.99 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.40 Total: -56.15 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.59 Total: -15.85 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.78 -8.83 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115046070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds