Wall clock time and date at job start Wed Apr 1 2020 04:15:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42908 * 113.99839 * 2 1
4 4 C 1.53000 * 109.47051 * 180.02562 * 3 2 1
5 5 O 1.42899 * 109.47235 * 64.99640 * 4 3 2
6 6 C 1.35926 * 117.00024 * 179.97438 * 5 4 3
7 7 C 1.38844 * 120.40464 * 359.97438 * 6 5 4
8 8 N 1.31879 * 121.00290 * 179.97438 * 7 6 5
9 9 C 1.31682 * 121.93912 * 0.03074 * 8 7 6
10 10 C 1.39524 * 120.69352 * 0.02562 * 9 8 7
11 11 C 1.47852 * 120.53513 * 179.97438 * 10 9 8
12 12 O 1.21552 * 119.99888 * 180.02562 * 11 10 9
13 13 N 1.34776 * 119.99946 * 359.97438 * 11 10 9
14 14 C 1.46500 * 120.00149 * 180.02562 * 13 11 10
15 15 H 1.08999 * 115.51191 * 9.58257 * 14 13 11
16 16 C 1.52998 * 117.44208 * 224.24608 * 14 13 11
17 17 H 1.09001 * 119.53865 * 4.11211 * 16 14 13
18 18 C 1.54389 * 118.12487 * 160.80836 * 16 14 13
19 19 N 1.48148 * 104.61736 * 87.18473 * 18 16 14
20 20 C 1.36934 * 127.83508 * 140.41615 * 19 18 16
21 21 H 1.08002 * 120.00377 * 344.91661 * 20 19 18
22 22 C 1.38815 * 119.99780 * 164.91165 * 20 19 18
23 23 N 1.31618 * 120.00051 * 350.66714 * 22 20 19
24 24 Si 1.86805 * 119.99875 * 170.66321 * 22 20 19
25 25 H 1.48498 * 109.46888 * 90.00420 * 24 22 20
26 26 H 1.48504 * 109.46856 * 210.00164 * 24 22 20
27 27 H 1.48501 * 109.46942 * 330.00221 * 24 22 20
28 28 C 1.51831 * 104.55273 * 320.14274 * 19 18 16
29 29 C 1.52996 * 117.44388 * 155.00465 * 14 13 11
30 30 H 1.09002 * 119.53746 * 355.87922 * 29 14 13
31 31 C 1.38841 * 120.40600 * 179.72771 * 6 5 4
32 32 H 1.09000 * 109.46693 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.46933 * 300.00073 * 1 2 3
34 34 H 1.08993 * 109.47072 * 60.00257 * 1 2 3
35 35 H 1.08997 * 109.47077 * 59.99969 * 3 2 1
36 36 H 1.09002 * 109.47016 * 299.99777 * 3 2 1
37 37 H 1.08997 * 109.47273 * 304.99362 * 4 3 2
38 38 H 1.09001 * 109.46718 * 184.99816 * 4 3 2
39 39 H 1.08001 * 119.50372 * 0.02562 * 7 6 5
40 40 H 1.08003 * 119.65787 * 179.97438 * 9 8 7
41 41 H 0.96999 * 119.99856 * 0.02562 * 13 11 10
42 42 H 1.08990 * 110.40688 * 205.97153 * 18 16 14
43 43 H 1.09002 * 110.40671 * 328.40333 * 18 16 14
44 44 H 0.97002 * 120.00108 * 179.97438 * 23 22 20
45 45 H 1.09005 * 111.95032 * 281.19398 * 28 19 18
46 46 H 1.08998 * 110.53078 * 157.59445 * 28 19 18
47 47 H 1.08002 * 120.87640 * 359.97282 * 31 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 -0.0006
5 8 3.9649 0.5797 -1.2219
6 6 5.3022 0.3988 -1.3841
7 6 6.1901 0.7936 -0.3924
8 7 7.4898 0.6233 -0.5372
9 6 8.0045 0.0764 -1.6188
10 6 7.1819 -0.3469 -2.6632
11 6 7.7636 -0.9601 -3.8764
12 8 7.0378 -1.3250 -4.7806
13 7 9.0985 -1.1134 -3.9801
14 6 9.6750 -1.7204 -5.1824
15 1 8.9823 -1.8715 -6.0102
16 6 10.7767 -2.7638 -4.9865
17 1 11.0511 -3.0728 -3.9779
18 6 11.0811 -3.7285 -6.1528
19 7 12.0709 -3.0071 -6.9862
20 6 13.1690 -3.5227 -7.6214
21 1 13.5354 -4.5034 -7.3562
22 6 13.8112 -2.7848 -8.6063
23 7 13.2650 -1.6764 -9.0596
24 14 15.4508 -3.3648 -9.2881
25 1 15.2154 -4.2521 -10.4553
26 1 16.2535 -2.1900 -9.7134
27 1 16.1868 -4.1133 -8.2377
28 6 11.5924 -1.5661 -6.9854
29 6 11.1211 -1.3613 -5.5295
30 1 11.6520 -0.6256 -4.9253
31 6 5.7968 -0.1877 -2.5413
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 -0.3633 0.5138 -0.8900
35 1 1.6886 1.8464 0.8900
36 1 1.6886 1.8464 -0.8900
37 1 3.8515 0.5684 0.8410
38 1 3.9784 2.1767 0.0889
39 1 5.8106 1.2464 0.5117
40 1 9.0747 -0.0451 -1.6988
41 1 9.6777 -0.8218 -3.2586
42 1 11.5071 -4.6581 -5.7758
43 1 10.1759 -3.9292 -6.7261
44 1 13.7139 -1.1606 -9.7476
45 1 10.7652 -1.4111 -7.6781
46 1 12.4153 -0.8900 -7.2171
47 1 5.1304 -0.5090 -3.3282
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001115046070.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:15:46
Heat of formation + Delta-G solvation = -7.894828 kcal
Electronic energy + Delta-G solvation = -28757.231463 eV
Core-core repulsion = 24522.209243 eV
Total energy + Delta-G solvation = -4235.022220 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.22932 -39.86303 -38.89515 -38.17290 -37.76988 -34.50188 -33.01548 -32.71383
-31.54964 -30.36703 -29.86648 -27.14875 -26.95255 -25.97311 -25.01646 -23.79101
-23.26044 -21.77597 -20.74736 -20.36052 -19.23845 -18.85853 -17.67864 -17.41677
-17.24200 -16.92324 -16.63294 -16.12227 -16.06410 -15.86441 -15.33140 -14.96103
-14.71442 -14.47665 -13.99125 -13.77987 -13.59678 -13.44801 -13.28420 -13.07527
-12.78424 -12.73821 -12.20315 -12.15433 -12.14244 -11.60905 -11.57742 -11.47540
-11.01048 -10.82155 -10.49969 -10.41040 -10.28545 -10.23253 -10.14754 -10.05966
-9.72615 -9.66008 -9.22300 -8.93459 -8.74765 -8.39227 -6.87243 -5.78280
-3.11151 0.26426 0.86166 2.43864 2.64967 3.02397 3.13280 3.39639
3.45044 3.46916 3.50424 3.91608 4.09523 4.26547 4.29847 4.43313
4.44034 4.49024 4.53003 4.61019 4.67226 4.78159 4.83868 4.84400
4.95860 5.03763 5.12195 5.19455 5.33157 5.36370 5.48358 5.55249
5.67789 5.77675 5.88762 5.91905 6.08877 6.18606 6.51820 6.52389
6.69415 6.73228 6.74008 6.88929 7.29908 7.41163 7.45410 7.51704
7.70317 8.10827 8.15142 9.07070 9.73876 10.50308 11.36827
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.032792 B = 0.001554 C = 0.001523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 853.656513 B =18011.823893 C =18375.862780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.062 3.938
4 C 0.056 3.944
5 O -0.297 6.297
6 C 0.076 3.924
7 C 0.035 3.965
8 N -0.450 5.450
9 C 0.096 3.904
10 C -0.139 4.139
11 C 0.564 3.436
12 O -0.526 6.526
13 N -0.688 5.688
14 C 0.093 3.907
15 H 0.134 0.866
16 C -0.181 4.181
17 H 0.104 0.896
18 C 0.158 3.842
19 N -0.598 5.598
20 C -0.225 4.225
21 H 0.077 0.923
22 C -0.006 4.006
23 N -0.917 5.917
24 Si 0.912 3.088
25 H -0.288 1.288
26 H -0.290 1.290
27 H -0.281 1.281
28 C 0.185 3.815
29 C -0.176 4.176
30 H 0.103 0.897
31 C -0.049 4.049
32 H 0.088 0.912
33 H 0.041 0.959
34 H 0.044 0.956
35 H 0.074 0.926
36 H 0.064 0.936
37 H 0.076 0.924
38 H 0.083 0.917
39 H 0.162 0.838
40 H 0.163 0.837
41 H 0.399 0.601
42 H 0.052 0.948
43 H 0.027 0.973
44 H 0.254 0.746
45 H 0.033 0.967
46 H 0.092 0.908
47 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.829 9.007 22.610 32.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.304 6.304
3 C -0.015 4.015
4 C -0.019 4.019
5 O -0.210 6.210
6 C 0.028 3.972
7 C -0.123 4.123
8 N -0.158 5.158
9 C -0.064 4.064
10 C -0.144 4.144
11 C 0.350 3.650
12 O -0.403 6.403
13 N -0.337 5.337
14 C -0.012 4.012
15 H 0.152 0.848
16 C -0.202 4.202
17 H 0.122 0.878
18 C 0.031 3.969
19 N -0.323 5.323
20 C -0.353 4.353
21 H 0.095 0.905
22 C -0.203 4.203
23 N -0.563 5.563
24 Si 0.742 3.258
25 H -0.215 1.215
26 H -0.216 1.216
27 H -0.206 1.206
28 C 0.061 3.939
29 C -0.197 4.197
30 H 0.121 0.879
31 C -0.076 4.076
32 H 0.107 0.893
33 H 0.060 0.940
34 H 0.062 0.938
35 H 0.092 0.908
36 H 0.082 0.918
37 H 0.094 0.906
38 H 0.101 0.899
39 H 0.179 0.821
40 H 0.180 0.820
41 H 0.234 0.766
42 H 0.071 0.929
43 H 0.044 0.956
44 H 0.064 0.936
45 H 0.051 0.949
46 H 0.111 0.889
47 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -21.663 8.830 22.288 32.312
hybrid contribution 0.455 0.029 -0.304 0.548
sum -21.209 8.859 21.984 31.806
Atomic orbital electron populations
1.22781 0.80519 1.03216 1.00055 1.87974 1.20086 1.26887 1.95438
1.22568 0.91133 0.86033 1.01731 1.22960 0.94308 0.98403 0.86231
1.86182 1.18669 1.76805 1.39305 1.19878 0.84133 0.97732 0.95432
1.23092 0.89177 1.01130 0.98898 1.67535 1.13244 1.11858 1.23191
1.22871 1.00297 0.94856 0.88338 1.20861 0.94048 1.02796 0.96702
1.17868 0.82342 0.78798 0.85990 1.90808 1.59862 1.49620 1.40003
1.45277 1.06261 1.61573 1.20569 1.21939 0.91044 0.99674 0.88561
0.84817 1.24403 1.02166 0.93247 1.00406 0.87766 1.21064 0.92757
0.93278 0.89764 1.46068 1.26225 1.02883 1.57117 1.19006 1.01621
1.01611 1.13074 0.90533 1.24863 0.99727 0.98252 0.97498 1.69882
1.38361 1.17013 1.31060 0.86131 0.83326 0.77497 0.78853 1.21494
1.21589 1.20617 1.21708 0.97984 0.87358 0.86889 1.24611 0.94574
0.98182 1.02369 0.87879 1.21015 0.94349 0.95878 0.96350 0.89313
0.93989 0.93764 0.90780 0.91808 0.90598 0.89943 0.82120 0.82027
0.76582 0.92932 0.95556 0.93572 0.94908 0.88949 0.82502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.15 11.01 101.05 1.11 1.26 16
2 O -0.39 -3.02 10.67 -40.08 -0.43 -3.44 16
3 C 0.06 0.31 6.32 37.16 0.23 0.55 16
4 C 0.06 0.30 5.13 37.16 0.19 0.49 16
5 O -0.30 -2.75 10.11 -24.36 -0.25 -3.00 16
6 C 0.08 0.75 6.70 -39.13 -0.26 0.49 16
7 C 0.03 0.31 10.21 -17.31 -0.18 0.13 16
8 N -0.45 -4.65 10.34 -12.80 -0.13 -4.79 16
9 C 0.10 0.96 10.71 -17.14 -0.18 0.78 16
10 C -0.14 -1.62 5.89 -104.84 -0.62 -2.24 16
11 C 0.56 8.07 7.78 -12.33 -0.10 7.97 16
12 O -0.53 -9.49 15.99 5.32 0.09 -9.40 16
13 N -0.69 -9.09 5.52 -54.75 -0.30 -9.40 16
14 C 0.09 1.54 5.97 -67.93 -0.41 1.14 16
15 H 0.13 2.51 7.40 -51.93 -0.38 2.13 16
16 C -0.18 -3.16 7.06 -89.22 -0.63 -3.79 16
17 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16
18 C 0.16 3.33 7.05 -2.41 -0.02 3.31 16
19 N -0.60 -15.26 3.45 -165.70 -0.57 -15.83 16
20 C -0.22 -6.25 10.36 -15.06 -0.16 -6.40 16
21 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16
22 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16
23 N -0.92 -26.74 10.84 55.49 0.60 -26.14 16
24 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16
25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
28 C 0.19 4.38 5.92 -0.29 0.00 4.38 16
29 C -0.18 -3.23 6.96 -89.22 -0.62 -3.85 16
30 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16
31 C -0.05 -0.56 9.67 -38.72 -0.37 -0.94 16
32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16
33 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16
34 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16
35 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.08 0.36 7.68 -51.93 -0.40 -0.04 16
38 H 0.08 0.25 7.67 -51.93 -0.40 -0.15 16
39 H 0.16 0.91 6.30 -52.49 -0.33 0.58 16
40 H 0.16 1.22 6.42 -52.48 -0.34 0.89 16
41 H 0.40 4.03 6.89 -40.82 -0.28 3.75 16
42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
45 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16
46 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16
47 H 0.16 1.86 7.73 -52.49 -0.41 1.45 16
LS Contribution 394.20 15.07 5.94 5.94
Total: -1.00 -34.78 394.20 -8.83 -43.61
By element:
Atomic # 1 Polarization: 9.24 SS G_CDS: -6.65 Total: 2.59 kcal
Atomic # 6 Polarization: 5.09 SS G_CDS: -2.10 Total: 2.99 kcal
Atomic # 7 Polarization: -55.74 SS G_CDS: -0.40 Total: -56.15 kcal
Atomic # 8 Polarization: -15.26 SS G_CDS: -0.59 Total: -15.85 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -34.78 -8.83 -43.61 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115046070.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal
(2) G-P(sol) polarization free energy of solvation -34.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds