Wall clock time and date at job start Wed Apr 1 2020 04:15:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42908 * 113.99839 * 2 1
4 4 C 1.53000 * 109.47051 * 180.02562 * 3 2 1
5 5 O 1.42899 * 109.47235 * 64.99640 * 4 3 2
6 6 C 1.35926 * 117.00024 * 179.97438 * 5 4 3
7 7 C 1.38844 * 120.40464 * 359.97438 * 6 5 4
8 8 N 1.31879 * 121.00290 * 179.97438 * 7 6 5
9 9 C 1.31682 * 121.93912 * 0.03074 * 8 7 6
10 10 C 1.39524 * 120.69352 * 0.02562 * 9 8 7
11 11 C 1.47852 * 120.53513 * 179.97438 * 10 9 8
12 12 O 1.21552 * 119.99888 * 180.02562 * 11 10 9
13 13 N 1.34776 * 119.99946 * 359.97438 * 11 10 9
14 14 C 1.46500 * 120.00149 * 180.02562 * 13 11 10
15 15 H 1.08999 * 115.51191 * 9.58257 * 14 13 11
16 16 C 1.52998 * 117.44208 * 224.24608 * 14 13 11
17 17 H 1.09001 * 119.53865 * 4.11211 * 16 14 13
18 18 C 1.54389 * 118.12487 * 160.80836 * 16 14 13
19 19 N 1.48148 * 104.61736 * 87.18473 * 18 16 14
20 20 C 1.36934 * 127.83508 * 140.41615 * 19 18 16
21 21 H 1.08002 * 120.00377 * 344.91661 * 20 19 18
22 22 C 1.38815 * 119.99780 * 164.91165 * 20 19 18
23 23 N 1.31618 * 120.00051 * 350.66714 * 22 20 19
24 24 Si 1.86805 * 119.99875 * 170.66321 * 22 20 19
25 25 H 1.48498 * 109.46888 * 90.00420 * 24 22 20
26 26 H 1.48504 * 109.46856 * 210.00164 * 24 22 20
27 27 H 1.48501 * 109.46942 * 330.00221 * 24 22 20
28 28 C 1.51831 * 104.55273 * 320.14274 * 19 18 16
29 29 C 1.52996 * 117.44388 * 155.00465 * 14 13 11
30 30 H 1.09002 * 119.53746 * 355.87922 * 29 14 13
31 31 C 1.38841 * 120.40600 * 179.72771 * 6 5 4
32 32 H 1.09000 * 109.46693 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.46933 * 300.00073 * 1 2 3
34 34 H 1.08993 * 109.47072 * 60.00257 * 1 2 3
35 35 H 1.08997 * 109.47077 * 59.99969 * 3 2 1
36 36 H 1.09002 * 109.47016 * 299.99777 * 3 2 1
37 37 H 1.08997 * 109.47273 * 304.99362 * 4 3 2
38 38 H 1.09001 * 109.46718 * 184.99816 * 4 3 2
39 39 H 1.08001 * 119.50372 * 0.02562 * 7 6 5
40 40 H 1.08003 * 119.65787 * 179.97438 * 9 8 7
41 41 H 0.96999 * 119.99856 * 0.02562 * 13 11 10
42 42 H 1.08990 * 110.40688 * 205.97153 * 18 16 14
43 43 H 1.09002 * 110.40671 * 328.40333 * 18 16 14
44 44 H 0.97002 * 120.00108 * 179.97438 * 23 22 20
45 45 H 1.09005 * 111.95032 * 281.19398 * 28 19 18
46 46 H 1.08998 * 110.53078 * 157.59445 * 28 19 18
47 47 H 1.08002 * 120.87640 * 359.97282 * 31 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 -0.0006
5 8 3.9649 0.5797 -1.2219
6 6 5.3022 0.3988 -1.3841
7 6 6.1901 0.7936 -0.3924
8 7 7.4898 0.6233 -0.5372
9 6 8.0045 0.0764 -1.6188
10 6 7.1819 -0.3469 -2.6632
11 6 7.7636 -0.9601 -3.8764
12 8 7.0378 -1.3250 -4.7806
13 7 9.0985 -1.1134 -3.9801
14 6 9.6750 -1.7204 -5.1824
15 1 8.9823 -1.8715 -6.0102
16 6 10.7767 -2.7638 -4.9865
17 1 11.0511 -3.0728 -3.9779
18 6 11.0811 -3.7285 -6.1528
19 7 12.0709 -3.0071 -6.9862
20 6 13.1690 -3.5227 -7.6214
21 1 13.5354 -4.5034 -7.3562
22 6 13.8112 -2.7848 -8.6063
23 7 13.2650 -1.6764 -9.0596
24 14 15.4508 -3.3648 -9.2881
25 1 15.2154 -4.2521 -10.4553
26 1 16.2535 -2.1900 -9.7134
27 1 16.1868 -4.1133 -8.2377
28 6 11.5924 -1.5661 -6.9854
29 6 11.1211 -1.3613 -5.5295
30 1 11.6520 -0.6256 -4.9253
31 6 5.7968 -0.1877 -2.5413
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 -0.3633 0.5138 -0.8900
35 1 1.6886 1.8464 0.8900
36 1 1.6886 1.8464 -0.8900
37 1 3.8515 0.5684 0.8410
38 1 3.9784 2.1767 0.0889
39 1 5.8106 1.2464 0.5117
40 1 9.0747 -0.0451 -1.6988
41 1 9.6777 -0.8218 -3.2586
42 1 11.5071 -4.6581 -5.7758
43 1 10.1759 -3.9292 -6.7261
44 1 13.7139 -1.1606 -9.7476
45 1 10.7652 -1.4111 -7.6781
46 1 12.4153 -0.8900 -7.2171
47 1 5.1304 -0.5090 -3.3282
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001115046070.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:15:45
Heat of formation + Delta-G solvation = -32.842855 kcal
Electronic energy + Delta-G solvation = -28758.313291 eV
Core-core repulsion = 24522.209243 eV
Total energy + Delta-G solvation = -4236.104048 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.04051 -40.98240 -39.87911 -39.24104 -38.37883 -36.06379 -34.50098 -33.68466
-32.51149 -31.69006 -30.71039 -28.90121 -27.72271 -27.30675 -26.04871 -24.56210
-24.04294 -23.15297 -22.01889 -21.72445 -20.80057 -19.73737 -18.83103 -18.48297
-18.01931 -17.84776 -17.71194 -17.10413 -16.69130 -16.60869 -16.44377 -16.00379
-15.89561 -15.78867 -15.32583 -14.89426 -14.65607 -14.61103 -14.48519 -14.21258
-13.77803 -13.61877 -13.32619 -13.25635 -13.21223 -12.89217 -12.70825 -12.61075
-12.55862 -12.15648 -12.03715 -12.01871 -11.86158 -11.64803 -11.54091 -10.92394
-10.84907 -10.71721 -10.68168 -10.57752 -9.80373 -9.59737 -8.91669 -7.89690
-5.24803 -0.56711 0.08622 1.48340 1.49520 1.59301 1.61571 1.64646
2.09579 2.50207 2.63655 2.79437 2.88653 3.19482 3.31101 3.41086
3.50618 3.62285 3.72925 3.82058 3.83826 3.91589 4.01492 4.12372
4.13936 4.16149 4.33040 4.38832 4.45268 4.50819 4.52395 4.56419
4.65424 4.72477 4.79950 4.87435 4.87808 4.90291 5.00474 5.20701
5.28045 5.37814 5.45049 5.51273 5.65935 6.09069 6.13805 6.21324
6.36085 6.67973 6.97020 7.02233 7.66826 8.46516 9.24942
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.032792 B = 0.001554 C = 0.001523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 853.656513 B =18011.823893 C =18375.862780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.419 6.419
3 C 0.056 3.944
4 C 0.045 3.955
5 O -0.317 6.317
6 C 0.078 3.922
7 C 0.049 3.951
8 N -0.460 5.460
9 C 0.103 3.897
10 C -0.149 4.149
11 C 0.567 3.433
12 O -0.572 6.572
13 N -0.672 5.672
14 C 0.113 3.887
15 H 0.108 0.892
16 C -0.163 4.163
17 H 0.139 0.861
18 C 0.150 3.850
19 N -0.622 5.622
20 C -0.239 4.239
21 H 0.082 0.918
22 C -0.063 4.063
23 N -0.949 5.949
24 Si 0.980 3.020
25 H -0.287 1.287
26 H -0.293 1.293
27 H -0.267 1.267
28 C 0.187 3.813
29 C -0.173 4.173
30 H 0.131 0.869
31 C -0.067 4.067
32 H 0.088 0.912
33 H 0.059 0.941
34 H 0.046 0.954
35 H 0.105 0.895
36 H 0.062 0.938
37 H 0.085 0.915
38 H 0.112 0.888
39 H 0.197 0.803
40 H 0.188 0.812
41 H 0.419 0.581
42 H 0.064 0.936
43 H 0.017 0.983
44 H 0.249 0.751
45 H 0.005 0.995
46 H 0.062 0.938
47 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.723 9.682 26.123 35.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.339 6.339
3 C -0.020 4.020
4 C -0.029 4.029
5 O -0.230 6.230
6 C 0.030 3.970
7 C -0.109 4.109
8 N -0.169 5.169
9 C -0.056 4.056
10 C -0.154 4.154
11 C 0.355 3.645
12 O -0.451 6.451
13 N -0.322 5.322
14 C 0.007 3.993
15 H 0.126 0.874
16 C -0.185 4.185
17 H 0.157 0.843
18 C 0.025 3.975
19 N -0.348 5.348
20 C -0.368 4.368
21 H 0.100 0.900
22 C -0.257 4.257
23 N -0.597 5.597
24 Si 0.808 3.192
25 H -0.214 1.214
26 H -0.219 1.219
27 H -0.192 1.192
28 C 0.062 3.938
29 C -0.194 4.194
30 H 0.149 0.851
31 C -0.094 4.094
32 H 0.107 0.893
33 H 0.078 0.922
34 H 0.065 0.935
35 H 0.122 0.878
36 H 0.080 0.920
37 H 0.103 0.897
38 H 0.130 0.870
39 H 0.213 0.787
40 H 0.205 0.795
41 H 0.258 0.742
42 H 0.082 0.918
43 H 0.034 0.966
44 H 0.058 0.942
45 H 0.023 0.977
46 H 0.080 0.920
47 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -21.565 9.504 25.864 34.990
hybrid contribution 0.237 -0.167 -1.349 1.380
sum -21.328 9.338 24.515 33.809
Atomic orbital electron populations
1.22903 0.79399 1.03640 1.01061 1.87921 1.21562 1.28732 1.95690
1.22788 0.90832 0.85259 1.03078 1.23356 0.94760 0.99847 0.84937
1.86179 1.18220 1.77182 1.41387 1.19845 0.84808 0.97391 0.94988
1.23629 0.88522 0.99417 0.99368 1.67659 1.13883 1.12267 1.23079
1.23195 1.01228 0.93687 0.87459 1.20578 0.94230 1.04403 0.96220
1.18258 0.82136 0.77883 0.86228 1.90792 1.60907 1.51608 1.41833
1.45008 1.06283 1.60987 1.19876 1.21454 0.89748 0.98950 0.89198
0.87412 1.24311 1.02114 0.91557 1.00471 0.84309 1.21201 0.91505
0.94459 0.90378 1.46391 1.26662 1.04152 1.57577 1.19409 1.02340
1.01881 1.13126 0.90014 1.25704 1.03166 0.98604 0.98181 1.70082
1.39717 1.18240 1.31651 0.85072 0.79169 0.76811 0.78188 1.21413
1.21911 1.19201 1.21450 0.95987 0.86400 0.89956 1.24301 0.96223
0.99746 0.99144 0.85148 1.21032 0.94418 0.96868 0.97048 0.89323
0.92194 0.93504 0.87772 0.92000 0.89700 0.87001 0.78673 0.79521
0.74231 0.91791 0.96562 0.94152 0.97680 0.91965 0.84096
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 11.01 113.37 1.25 1.47 16
2 O -0.42 -6.15 10.67 -144.34 -1.54 -7.69 16
3 C 0.06 0.46 6.32 71.98 0.45 0.91 16
4 C 0.05 0.37 5.13 71.98 0.37 0.74 16
5 O -0.32 -5.47 10.11 -88.08 -0.89 -6.36 16
6 C 0.08 1.41 6.70 22.56 0.15 1.57 16
7 C 0.05 0.71 10.21 84.83 0.87 1.57 16
8 N -0.46 -8.05 10.34 -194.40 -2.01 -10.06 16
9 C 0.10 1.79 10.71 85.03 0.91 2.70 16
10 C -0.15 -3.32 5.89 -20.01 -0.12 -3.44 16
11 C 0.57 15.92 7.78 86.79 0.68 16.60 16
12 O -0.57 -21.21 15.99 -3.88 -0.06 -21.27 16
13 N -0.67 -16.50 5.52 -445.41 -2.46 -18.96 16
14 C 0.11 3.66 5.97 44.99 0.27 3.93 16
15 H 0.11 4.16 7.40 -2.39 -0.02 4.15 16
16 C -0.16 -5.42 7.06 -9.89 -0.07 -5.49 16
17 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16
18 C 0.15 6.29 7.05 86.53 0.61 6.90 16
19 N -0.62 -32.29 3.45 -678.15 -2.34 -34.63 16
20 C -0.24 -13.42 10.36 84.03 0.87 -12.55 16
21 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16
22 C -0.06 -3.58 5.41 84.86 0.46 -3.12 16
23 N -0.95 -57.19 10.84 21.65 0.23 -56.96 16
24 Si 0.98 45.52 29.56 68.60 2.03 47.55 16
25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16
26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
28 C 0.19 9.13 5.92 85.79 0.51 9.64 16
29 C -0.17 -6.20 6.96 -9.89 -0.07 -6.27 16
30 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16
31 C -0.07 -1.52 9.67 22.83 0.22 -1.30 16
32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
33 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16
34 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16
35 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16
36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
37 H 0.08 0.55 7.68 -2.39 -0.02 0.53 16
38 H 0.11 0.24 7.67 -2.39 -0.02 0.23 16
39 H 0.20 1.34 6.30 -2.91 -0.02 1.32 16
40 H 0.19 2.11 6.42 -2.91 -0.02 2.09 16
41 H 0.42 7.03 6.89 -92.71 -0.64 6.39 16
42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16
43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
45 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16
46 H 0.06 3.40 6.58 -2.39 -0.02 3.38 16
47 H 0.14 3.57 7.73 -2.91 -0.02 3.55 16
Total: -1.00 -78.79 394.20 0.68 -78.11
By element:
Atomic # 1 Polarization: 16.04 SS G_CDS: 0.36 Total: 16.41 kcal
Atomic # 6 Polarization: 6.50 SS G_CDS: 7.36 Total: 13.85 kcal
Atomic # 7 Polarization: -114.03 SS G_CDS: -6.57 Total: -120.61 kcal
Atomic # 8 Polarization: -32.82 SS G_CDS: -2.49 Total: -35.31 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -78.79 0.68 -78.11 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115046070.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.263 kcal
(2) G-P(sol) polarization free energy of solvation -78.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.527 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds