Wall clock time and date at job start Wed Apr 1 2020 04:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36008 * 116.99953 * 2 1 4 4 C 1.35853 * 120.31796 * 359.97438 * 3 2 1 5 5 N 1.35438 * 120.78139 * 180.02562 * 4 3 2 6 6 H 0.96999 * 119.29547 * 180.02562 * 5 4 3 7 7 C 1.36424 * 121.40913 * 359.97438 * 5 4 3 8 8 C 1.48074 * 119.71791 * 179.97438 * 7 5 4 9 9 O 1.21513 * 120.00170 * 179.97438 * 8 7 5 10 10 N 1.34776 * 120.00297 * 359.97438 * 8 7 5 11 11 C 1.46498 * 120.00322 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47051 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.46941 * 179.97438 * 12 11 10 14 14 C 1.29454 * 117.69519 * 94.99974 * 13 12 11 15 15 C 1.50322 * 123.65500 * 180.86104 * 14 13 12 16 16 N 1.47012 * 109.16271 * 349.01804 * 15 14 13 17 17 C 1.36934 * 121.37462 * 222.96812 * 16 15 14 18 18 H 1.08005 * 120.00007 * 155.96961 * 17 16 15 19 19 C 1.38818 * 120.00320 * 335.97331 * 17 16 15 20 20 N 1.31616 * 119.99424 * 344.52132 * 19 17 16 21 21 Si 1.86793 * 120.00033 * 164.52092 * 19 17 16 22 22 H 1.48499 * 109.47295 * 59.99993 * 21 19 17 23 23 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47357 * 299.99725 * 21 19 17 25 25 C 1.47333 * 117.24883 * 42.94994 * 16 15 14 26 26 C 1.49972 * 117.69466 * 274.74018 * 13 12 11 27 27 C 1.36176 * 120.56623 * 0.24736 * 7 5 4 28 28 C 1.41582 * 120.31658 * 180.02562 * 3 2 1 29 29 O 1.22261 * 120.65292 * 0.02562 * 28 3 2 30 30 H 1.08996 * 109.47008 * 299.99794 * 1 2 3 31 31 H 1.09001 * 109.46958 * 60.00046 * 1 2 3 32 32 H 1.09003 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.60610 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99573 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47006 * 60.00383 * 11 10 8 36 36 H 1.09001 * 109.47043 * 299.99893 * 11 10 8 37 37 H 1.08996 * 109.47184 * 60.00147 * 12 11 10 38 38 H 1.09001 * 109.46827 * 299.99680 * 12 11 10 39 39 H 1.07997 * 118.17426 * 0.87895 * 14 13 12 40 40 H 1.08999 * 109.52720 * 108.92650 * 15 14 13 41 41 H 1.08998 * 109.52220 * 229.11921 * 15 14 13 42 42 H 0.97005 * 119.99607 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.77712 * 57.81016 * 25 16 15 44 44 H 1.08993 * 109.77988 * 178.61344 * 25 16 15 45 45 H 1.09000 * 109.31400 * 281.28746 * 26 13 12 46 46 H 1.08991 * 109.31850 * 40.71826 * 26 13 12 47 47 H 1.07996 * 120.40835 * 179.72961 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5670 -0.0010 6 1 1.3732 4.3696 -0.0010 7 6 3.2773 3.6829 -0.0006 8 6 3.8995 5.0266 -0.0017 9 8 5.1097 5.1358 -0.0008 10 7 3.1235 6.1285 -0.0038 11 6 3.7390 7.4579 -0.0055 12 6 2.6443 8.5268 -0.0071 13 6 3.2775 9.8943 -0.0082 14 6 3.4401 10.4811 -1.1506 15 6 4.0729 11.8354 -1.3090 16 7 4.2150 12.4593 0.0146 17 6 3.9145 13.7800 0.2161 18 1 3.6475 14.1287 1.2028 19 6 3.9530 14.6708 -0.8479 20 7 4.5600 14.3343 -1.9662 21 14 3.1432 16.3469 -0.6924 22 1 3.7687 17.0970 0.4262 23 1 3.3244 17.1034 -1.9574 24 1 1.6934 16.1732 -0.4224 25 6 4.6936 11.6050 1.1153 26 6 3.6694 10.4820 1.3147 27 6 4.0669 2.5734 -0.0046 28 6 3.4599 1.2938 -0.0005 29 8 4.1431 0.2798 -0.0015 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2345 2.2973 -0.0005 34 1 2.1574 6.0414 -0.0042 35 1 4.3583 7.5704 -0.8954 36 1 4.3575 7.5731 0.8846 37 1 2.0253 8.4142 0.8830 38 1 2.0255 8.4118 -0.8970 39 1 3.1020 9.9692 -2.0395 40 1 5.0556 11.7269 -1.7679 41 1 3.4420 12.4607 -1.9405 42 1 4.5866 14.9566 -2.7098 43 1 5.6649 11.1821 0.8584 44 1 4.7768 12.1929 2.0292 45 1 2.7834 10.8809 1.8087 46 1 4.1074 9.7038 1.9395 47 1 5.1427 2.6681 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160677279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:26 Heat of formation + Delta-G solvation = -25.655682 kcal Electronic energy + Delta-G solvation = -29078.885738 eV Core-core repulsion = 24843.093350 eV Total energy + Delta-G solvation = -4235.792388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.87578 -40.14431 -38.55024 -38.04839 -37.96496 -35.83110 -33.80337 -32.07272 -31.69716 -31.07869 -29.93293 -28.90698 -28.08124 -25.86203 -24.61464 -23.64499 -23.09775 -22.59816 -21.37817 -21.01245 -20.15278 -18.57789 -18.09935 -17.68222 -16.69599 -16.60735 -16.48020 -16.02814 -15.77351 -15.61497 -15.16400 -14.94994 -14.82821 -14.71541 -14.21109 -14.13423 -13.93791 -13.68630 -13.54399 -13.37914 -13.21317 -12.74491 -12.37242 -12.16467 -12.05917 -11.92164 -11.71941 -11.53175 -11.17519 -10.98051 -10.80179 -10.75628 -10.38573 -10.31943 -9.93085 -9.92836 -9.86738 -9.63668 -9.55559 -8.70814 -8.13724 -8.02811 -6.77895 -5.83263 -3.22197 0.21162 0.71370 2.04419 2.32991 2.37299 2.75218 2.85489 3.28336 3.35225 3.41047 3.41802 3.84394 3.99813 4.16350 4.43245 4.45620 4.59117 4.60299 4.88415 4.90678 4.96337 5.04595 5.09565 5.28325 5.34408 5.43113 5.49527 5.61256 5.69152 5.77378 5.82624 5.91542 6.04172 6.07679 6.11878 6.16630 6.30425 6.47335 6.70497 6.71630 6.83435 6.83980 7.14702 7.24458 7.32051 7.49452 7.61319 7.69407 7.80145 8.34547 9.15994 9.78747 10.37106 11.27112 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.001602 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.970824 B =17479.004266 C =17889.312601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.030 4.030 4 C 0.026 3.974 5 N -0.565 5.565 6 H 0.419 0.581 7 C 0.123 3.877 8 C 0.555 3.445 9 O -0.497 6.497 10 N -0.722 5.722 11 C 0.122 3.878 12 C -0.092 4.092 13 C -0.146 4.146 14 C -0.142 4.142 15 C 0.195 3.805 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.142 3.858 26 C -0.091 4.091 27 C -0.208 4.208 28 C 0.400 3.600 29 O -0.492 6.492 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -23.129 3.639 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.199 6.199 3 C -0.082 4.082 4 C -0.100 4.100 5 N -0.179 5.179 6 H 0.256 0.744 7 C 0.011 3.989 8 C 0.338 3.662 9 O -0.370 6.370 10 N -0.374 5.374 11 C 0.000 4.000 12 C -0.130 4.130 13 C -0.147 4.147 14 C -0.162 4.162 15 C 0.070 3.930 16 N -0.318 5.318 17 C -0.377 4.377 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.016 3.984 26 C -0.130 4.130 27 C -0.236 4.236 28 C 0.289 3.711 29 O -0.375 6.375 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.188 0.812 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.468 -23.679 3.488 26.540 hybrid contribution -1.724 1.382 -0.082 2.211 sum -13.192 -22.297 3.406 26.130 Atomic orbital electron populations 1.23158 0.78971 1.04694 1.00969 1.86294 1.20477 1.24216 1.88913 1.20445 0.94819 0.84752 1.08158 1.21632 0.98814 0.84064 1.05518 1.40655 1.05003 1.08475 1.63741 0.74419 1.20389 0.82842 0.95670 0.99980 1.17907 0.87193 0.82907 0.78212 1.90900 1.12838 1.85653 1.47602 1.46069 1.09657 1.06816 1.74872 1.21640 0.96330 0.78400 1.03670 1.20922 0.96649 0.93159 1.02221 1.20189 1.04215 0.94236 0.96039 1.23155 0.97598 0.99412 0.95989 1.19724 0.97793 0.87360 0.88119 1.44120 1.76198 1.06813 1.04694 1.19143 1.39480 0.83545 0.95512 0.91429 1.24992 0.99679 0.97807 0.97422 1.70004 1.44184 1.36279 1.04969 0.86322 0.79470 0.83822 0.76879 1.20904 1.21619 1.21138 1.20993 0.93598 0.91383 0.92459 1.20793 1.00297 0.98203 0.93712 1.22526 1.02463 0.90382 1.08202 1.16819 0.86162 0.89820 0.78341 1.90875 1.65698 1.37511 1.43458 0.92656 0.92656 0.87777 0.81217 0.77220 0.90428 0.90416 0.91335 0.91422 0.89049 0.94289 0.89083 0.93542 0.95744 0.92518 0.91909 0.92912 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.06 16 2 O -0.29 -2.70 10.33 -35.59 -0.37 -3.07 16 3 C -0.03 -0.28 6.71 -39.16 -0.26 -0.54 16 4 C 0.03 0.12 10.22 -16.81 -0.17 -0.05 16 5 N -0.56 -2.27 5.26 -9.58 -0.05 -2.32 16 6 H 0.42 0.19 7.00 -40.82 -0.29 -0.10 16 7 C 0.12 0.96 6.77 -82.53 -0.56 0.40 16 8 C 0.55 5.24 7.80 -12.22 -0.10 5.14 16 9 O -0.50 -6.85 16.27 5.35 0.09 -6.76 16 10 N -0.72 -5.11 5.55 -61.18 -0.34 -5.45 16 11 C 0.12 1.21 5.66 -4.04 -0.02 1.19 16 12 C -0.09 -0.94 5.32 -27.88 -0.15 -1.08 16 13 C -0.15 -2.23 5.11 -100.99 -0.52 -2.75 16 14 C -0.14 -2.52 9.47 -35.78 -0.34 -2.86 16 15 C 0.19 4.49 5.23 -5.10 -0.03 4.46 16 16 N -0.60 -14.50 3.01 -173.56 -0.52 -15.02 16 17 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 18 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 19 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 20 N -0.91 -25.77 11.08 55.49 0.61 -25.15 16 21 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.14 2.86 6.59 -3.44 -0.02 2.84 16 26 C -0.09 -1.47 5.95 -28.09 -0.17 -1.63 16 27 C -0.21 -2.18 9.53 -39.03 -0.37 -2.56 16 28 C 0.40 4.92 6.78 -37.01 -0.25 4.67 16 29 O -0.49 -8.14 17.71 -11.14 -0.20 -8.34 16 30 H 0.05 0.11 7.66 -51.93 -0.40 -0.29 16 31 H 0.05 0.11 7.66 -51.93 -0.40 -0.29 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.17 0.11 6.21 -52.49 -0.33 -0.21 16 34 H 0.39 1.27 6.68 -40.82 -0.27 1.00 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.07 0.62 7.78 -51.93 -0.40 0.21 16 39 H 0.09 1.40 7.73 -52.49 -0.41 1.00 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 2.33 6.41 -51.93 -0.33 2.00 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 47 H 0.17 1.90 7.57 -52.49 -0.40 1.51 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -36.76 389.65 -8.69 -45.44 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.56 Total: -2.82 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.20 Total: 1.39 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.30 Total: -47.94 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.48 Total: -18.17 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.76 -8.69 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160677279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.785 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds