Wall clock time and date at job start Wed Apr 1 2020 05:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 119.99992 * 2 1 4 4 H 1.08003 * 119.99900 * 153.89646 * 3 2 1 5 5 C 1.38816 * 120.00021 * 333.61934 * 3 2 1 6 6 N 1.31614 * 119.99679 * 350.96244 * 5 3 2 7 7 Si 1.86797 * 120.00120 * 170.96647 * 5 3 2 8 8 H 1.48508 * 109.47208 * 59.99632 * 7 5 3 9 9 H 1.48495 * 109.47036 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46983 * 299.99803 * 7 5 3 11 11 C 1.46497 * 119.99893 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.88735 * 176.11869 * 11 2 1 13 13 C 1.55155 * 111.00602 * 52.19648 * 11 2 1 14 14 C 1.54327 * 102.94492 * 206.42408 * 13 11 2 15 15 N 1.47021 * 107.26854 * 22.18927 * 14 13 11 16 16 C 1.34777 * 125.64367 * 181.02107 * 15 14 13 17 17 O 1.21284 * 119.99781 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00451 * 0.05112 * 16 15 14 19 19 S 1.81396 * 109.47304 * 179.97438 * 18 16 15 20 20 O 1.42103 * 110.53891 * 282.75721 * 19 18 16 21 21 O 1.42101 * 110.54505 * 59.50829 * 19 18 16 22 22 N 1.65602 * 104.44929 * 171.13811 * 19 18 16 23 23 C 1.46501 * 120.00283 * 60.12874 * 22 19 18 24 24 C 1.53000 * 109.47058 * 38.41076 * 23 22 19 25 25 C 1.53002 * 109.46796 * 158.41102 * 23 22 19 26 26 C 1.53000 * 109.47046 * 278.40764 * 23 22 19 27 27 C 1.47419 * 108.70393 * 1.06552 * 15 14 13 28 28 H 1.08998 * 109.46797 * 92.69619 * 1 2 3 29 29 H 1.09004 * 109.47203 * 212.69405 * 1 2 3 30 30 H 1.08999 * 109.47151 * 332.69373 * 1 2 3 31 31 H 0.97005 * 120.00300 * 180.02562 * 6 5 3 32 32 H 1.09008 * 110.71864 * 324.78477 * 13 11 2 33 33 H 1.09003 * 110.72125 * 88.05597 * 13 11 2 34 34 H 1.08998 * 109.87944 * 262.77155 * 14 13 11 35 35 H 1.09000 * 110.00910 * 141.67969 * 14 13 11 36 36 H 1.09000 * 109.46721 * 299.99605 * 18 16 15 37 37 H 1.08999 * 109.47372 * 59.98802 * 18 16 15 38 38 H 0.97010 * 119.99531 * 240.13284 * 22 19 18 39 39 H 1.09004 * 109.46826 * 59.99882 * 24 23 22 40 40 H 1.09000 * 109.46887 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.46788 * 300.00034 * 24 23 22 42 42 H 1.08993 * 109.47660 * 60.00333 * 25 23 22 43 43 H 1.09006 * 109.46551 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47226 * 299.99311 * 25 23 22 45 45 H 1.09005 * 109.46769 * 66.91100 * 26 23 22 46 46 H 1.08994 * 109.46930 * 186.90795 * 26 23 22 47 47 H 1.09000 * 109.47093 * 306.91159 * 26 23 22 48 48 H 1.09006 * 110.36334 * 217.03398 * 27 15 14 49 49 H 1.08996 * 110.46471 * 94.75907 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1471 1.2335 0.4115 5 6 1.5640 2.3254 -0.5342 6 7 0.4312 2.2337 -1.1979 7 14 2.3838 3.9890 -0.3111 8 1 3.7366 3.9604 -0.9231 9 1 1.5639 5.0372 -0.9701 10 1 2.5023 4.2921 1.1378 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0973 -0.0684 13 6 1.7067 -2.1948 -1.1435 14 6 2.0243 -3.6062 -0.6061 15 7 2.1176 -3.5051 0.8577 16 6 2.4010 -4.5195 1.6985 17 8 2.4517 -4.3202 2.8938 18 6 2.6554 -5.9013 1.1537 19 16 3.0067 -7.0366 2.5241 20 8 4.3360 -6.8558 2.9930 21 8 1.9110 -7.0817 3.4277 22 7 3.0212 -8.5373 1.8242 23 6 3.9809 -8.8399 0.7596 24 6 5.3225 -8.1772 1.0789 25 6 4.1712 -10.3548 0.6600 26 6 3.4513 -8.3038 -0.5720 27 6 1.8489 -2.1106 1.2533 28 1 -0.3633 -0.0483 -1.0265 29 1 -0.3634 -0.8649 0.5551 30 1 -0.3633 0.9131 0.4714 31 1 0.0221 3.0299 -1.5715 32 1 0.6351 -2.0752 -1.3035 33 1 2.2592 -1.9986 -2.0624 34 1 2.9731 -3.9536 -1.0150 35 1 1.2274 -4.2976 -0.8799 36 1 1.7744 -6.2463 0.6124 37 1 3.5096 -5.8736 0.4771 38 1 2.3940 -9.2161 2.1192 39 1 5.6997 -8.5592 2.0275 40 1 6.0367 -8.4028 0.2869 41 1 5.1868 -7.0981 1.1498 42 1 3.2156 -10.8269 0.4325 43 1 4.8857 -10.5799 -0.1319 44 1 4.5486 -10.7367 1.6086 45 1 3.4318 -7.2143 -0.5430 46 1 4.1024 -8.6341 -1.3813 47 1 2.4426 -8.6810 -0.7401 48 1 2.4847 -1.8249 2.0913 49 1 0.7983 -1.9845 1.5149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194104220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:10 Heat of formation + Delta-G solvation = -98.319219 kcal Electronic energy + Delta-G solvation = -30021.238296 eV Core-core repulsion = 25917.738931 eV Total energy + Delta-G solvation = -4103.499364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.30611 -39.16065 -39.08515 -38.01607 -37.05361 -36.64166 -33.68533 -32.16433 -31.87973 -31.05912 -29.21271 -28.22575 -28.07237 -27.97287 -25.29514 -23.90284 -21.69129 -21.07589 -20.80870 -20.02105 -19.06262 -18.97064 -17.99964 -17.75223 -17.59143 -17.27972 -16.61350 -16.27807 -16.01839 -15.73558 -15.16291 -15.09966 -14.93824 -14.84710 -14.46344 -14.34778 -14.13013 -13.98421 -13.65203 -13.47077 -13.45201 -13.25009 -13.08099 -13.00617 -12.81023 -12.69651 -12.54720 -12.49090 -12.40811 -12.38367 -12.31560 -12.18265 -12.13249 -11.96850 -11.85796 -11.59917 -11.46602 -11.35518 -10.63916 -10.52641 -9.84938 -8.77036 -7.87871 -5.38024 -0.93315 1.22365 1.46805 1.49322 1.54726 1.58430 1.84204 2.49059 2.72803 3.07420 3.18685 3.28700 3.50895 3.69491 3.84514 3.89976 3.93812 3.98937 4.08111 4.11610 4.18762 4.31089 4.39377 4.40892 4.65624 4.75323 4.76027 4.83450 4.88029 4.93773 4.97652 4.99810 5.03106 5.07859 5.21338 5.28917 5.30549 5.35408 5.39518 5.50161 5.50616 5.61497 5.68971 6.12787 6.27499 6.32035 6.71884 7.12430 7.81099 8.26212 9.16461 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.002348 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.517412 B =11921.302224 C =12195.926264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.272 4.272 4 H 0.068 0.932 5 C -0.044 4.044 6 N -0.932 5.932 7 Si 0.968 3.032 8 H -0.273 1.273 9 H -0.293 1.293 10 H -0.283 1.283 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.142 4.142 14 C 0.100 3.900 15 N -0.597 5.597 16 C 0.542 3.458 17 O -0.594 6.594 18 C -0.656 4.656 19 S 2.646 3.354 20 O -0.976 6.976 21 O -0.992 6.992 22 N -1.098 6.098 23 C 0.160 3.840 24 C -0.186 4.186 25 C -0.148 4.148 26 C -0.188 4.188 27 C 0.088 3.912 28 H 0.008 0.992 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.250 0.750 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.203 0.797 37 H 0.198 0.802 38 H 0.427 0.573 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.055 0.945 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 -27.892 -5.179 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.402 4.402 4 H 0.086 0.914 5 C -0.240 4.240 6 N -0.578 5.578 7 Si 0.796 3.204 8 H -0.199 1.199 9 H -0.219 1.219 10 H -0.209 1.209 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.182 4.182 14 C -0.021 4.021 15 N -0.329 5.329 16 C 0.330 3.670 17 O -0.477 6.477 18 C -0.785 4.785 19 S 2.737 3.263 20 O -0.966 6.966 21 O -0.981 6.981 22 N -0.861 5.861 23 C 0.073 3.927 24 C -0.244 4.244 25 C -0.207 4.207 26 C -0.246 4.246 27 C -0.037 4.037 28 H 0.026 0.974 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.221 0.779 37 H 0.215 0.785 38 H 0.265 0.735 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.212 -27.350 -3.771 28.299 hybrid contribution -0.356 1.376 -0.108 1.426 sum 5.856 -25.974 -3.879 26.907 Atomic orbital electron populations 1.20512 0.82694 0.96485 0.97093 1.43920 1.02004 1.00829 1.85472 1.19460 1.00400 0.87406 1.32896 0.91446 1.25801 0.98477 1.01935 0.97746 1.70170 1.20328 1.28527 1.38768 0.85338 0.77960 0.79534 0.77539 1.19889 1.21896 1.20903 1.21555 0.96045 0.84976 0.91821 0.90555 1.23055 1.02339 0.93363 0.99402 1.22424 1.04380 0.98312 0.76978 1.48351 1.66974 1.08307 1.09222 1.19483 0.76648 0.85683 0.85210 1.90844 1.55289 1.84722 1.16819 1.31312 1.17243 1.05984 1.23957 1.03683 0.73364 0.74384 0.74845 1.93591 1.38430 1.86064 1.78489 1.93526 1.56849 1.86176 1.61597 1.55571 1.48196 1.29054 1.53327 1.20532 0.87190 0.98464 0.86522 1.22690 0.97353 1.00890 1.03502 1.22062 1.03749 0.91624 1.03229 1.22739 1.03777 1.02183 0.95923 1.22808 1.00550 0.80507 0.99856 0.97359 0.95963 0.95776 0.94052 0.91390 0.89245 0.87653 0.87958 0.77936 0.78463 0.73540 0.92301 0.88538 0.92553 0.90568 0.89347 0.92504 0.91374 0.88875 0.89945 0.92614 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.41 7.67 127.77 0.98 9.39 16 2 N -0.60 -28.76 2.95 -695.02 -2.05 -30.82 16 3 C -0.27 -14.49 9.58 84.04 0.81 -13.68 16 4 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16 5 C -0.04 -2.37 5.12 84.86 0.43 -1.94 16 6 N -0.93 -53.19 10.75 21.65 0.23 -52.96 16 7 Si 0.97 44.17 29.56 68.60 2.03 46.20 16 8 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 9 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 C 0.17 6.19 3.54 46.38 0.16 6.36 16 12 H 0.08 2.90 7.96 -2.39 -0.02 2.88 16 13 C -0.14 -4.01 6.50 31.78 0.21 -3.80 16 14 C 0.10 1.96 6.49 86.73 0.56 2.52 16 15 N -0.60 -16.81 3.33 -811.80 -2.70 -19.51 16 16 C 0.54 15.88 7.87 87.66 0.69 16.57 16 17 O -0.59 -23.80 15.84 2.57 0.04 -23.75 16 18 C -0.66 -10.83 4.00 71.23 0.29 -10.54 16 19 S 2.65 60.71 4.27 -56.49 -0.24 60.47 16 20 O -0.98 -28.77 14.50 -127.65 -1.85 -30.62 16 21 O -0.99 -31.90 17.72 -123.72 -2.19 -34.10 16 22 N -1.10 -13.66 5.42 -152.21 -0.83 -14.49 16 23 C 0.16 1.36 1.16 3.60 0.00 1.37 16 24 C -0.19 -2.35 7.10 71.98 0.51 -1.84 16 25 C -0.15 -0.78 8.64 71.98 0.62 -0.16 16 26 C -0.19 -0.67 8.33 71.98 0.60 -0.07 16 27 C 0.09 3.18 6.49 86.86 0.56 3.74 16 28 H 0.01 0.41 7.58 -2.39 -0.02 0.39 16 29 H 0.02 0.92 6.38 -2.38 -0.02 0.91 16 30 H 0.02 1.26 6.94 -2.39 -0.02 1.25 16 31 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 32 H 0.07 2.10 6.95 -2.38 -0.02 2.08 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.20 1.54 8.12 -2.39 -0.02 1.52 16 37 H 0.20 1.74 5.62 -2.39 -0.01 1.73 16 38 H 0.43 3.91 8.67 -96.73 -0.84 3.07 16 39 H 0.06 1.00 7.74 -2.39 -0.02 0.98 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.84 5.27 -2.39 -0.01 0.83 16 42 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 44 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.16 4.74 -2.38 -0.01 0.15 16 46 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.06 2.22 8.04 -2.38 -0.02 2.20 16 49 H 0.06 2.34 6.34 -2.39 -0.02 2.33 16 Total: -1.00 -83.02 387.92 -1.01 -84.03 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.12 Total: 7.63 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.43 Total: 7.91 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.34 Total: -117.77 kcal Atomic # 8 Polarization: -84.47 SS G_CDS: -4.00 Total: -88.47 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 60.71 SS G_CDS: -0.24 Total: 60.47 kcal Total: -83.02 -1.01 -84.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194104220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.287 kcal (2) G-P(sol) polarization free energy of solvation -83.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds