Wall clock time and date at job start Wed Apr 1 2020 05:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99814 * 2 1 4 4 H 1.07994 * 120.00294 * 197.21522 * 3 2 1 5 5 C 1.38816 * 119.99673 * 17.21213 * 3 2 1 6 6 N 1.31616 * 120.00237 * 17.75456 * 5 3 2 7 7 Si 1.86803 * 119.99816 * 197.74652 * 5 3 2 8 8 H 1.48506 * 109.46924 * 60.00332 * 7 5 3 9 9 H 1.48500 * 109.47093 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47387 * 300.00606 * 7 5 3 11 11 C 1.46500 * 120.00074 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.63751 * 178.30851 * 11 2 1 13 13 C 1.55150 * 110.72001 * 301.45081 * 11 2 1 14 14 C 1.54908 * 101.58043 * 154.04697 * 13 11 2 15 15 N 1.47426 * 104.83332 * 322.98674 * 14 13 11 16 16 C 1.34771 * 125.65184 * 204.09593 * 15 14 13 17 17 O 1.21276 * 120.00326 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.00165 * 0.02659 * 16 15 14 19 19 S 1.81395 * 109.47205 * 179.97438 * 18 16 15 20 20 O 1.42096 * 110.54385 * 299.76607 * 19 18 16 21 21 O 1.42103 * 110.54369 * 76.52282 * 19 18 16 22 22 N 1.65605 * 104.44683 * 188.14663 * 19 18 16 23 23 C 1.46505 * 119.99929 * 284.15500 * 22 19 18 24 24 C 1.52996 * 109.46865 * 51.65309 * 23 22 19 25 25 C 1.52995 * 109.46804 * 171.65654 * 23 22 19 26 26 C 1.53000 * 109.47128 * 291.65573 * 23 22 19 27 27 C 1.47028 * 108.70138 * 24.13076 * 15 14 13 28 28 H 1.09004 * 109.46829 * 273.40244 * 1 2 3 29 29 H 1.08998 * 109.47302 * 33.40681 * 1 2 3 30 30 H 1.09005 * 109.47064 * 153.41262 * 1 2 3 31 31 H 0.97000 * 120.00204 * 180.02562 * 6 5 3 32 32 H 1.08993 * 111.00841 * 35.96858 * 13 11 2 33 33 H 1.09007 * 111.00543 * 272.11649 * 13 11 2 34 34 H 1.08999 * 110.37079 * 81.82528 * 14 13 11 35 35 H 1.09006 * 110.36573 * 204.14904 * 14 13 11 36 36 H 1.08998 * 109.46599 * 299.99987 * 18 16 15 37 37 H 1.09001 * 109.46859 * 59.99713 * 18 16 15 38 38 H 0.96994 * 120.00409 * 104.15710 * 22 19 18 39 39 H 1.08999 * 109.47452 * 60.00554 * 24 23 22 40 40 H 1.09006 * 109.46861 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47264 * 299.99836 * 24 23 22 42 42 H 1.08994 * 109.47895 * 60.00150 * 25 23 22 43 43 H 1.09000 * 109.46825 * 180.02562 * 25 23 22 44 44 H 1.08999 * 109.47287 * 299.99307 * 25 23 22 45 45 H 1.08999 * 109.47181 * 69.95089 * 26 23 22 46 46 H 1.08992 * 109.47161 * 189.95664 * 26 23 22 47 47 H 1.09008 * 109.47024 * 309.95543 * 26 23 22 48 48 H 1.08999 * 109.88413 * 239.52856 * 27 15 14 49 49 H 1.09001 * 109.88195 * 118.35714 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1933 1.2070 -0.2768 5 6 1.5021 2.3611 0.3557 6 7 0.3652 2.3119 1.0170 7 14 2.2445 4.0126 -0.1039 8 1 2.3700 4.1050 -1.5807 9 1 1.3662 5.1042 0.3880 10 1 3.5878 4.1412 0.5160 11 6 2.1975 -1.2687 -0.0006 12 1 3.2727 -1.0916 -0.0306 13 6 1.8163 -2.1232 1.2370 14 6 2.1055 -3.5568 0.7261 15 7 1.6994 -3.5415 -0.6910 16 6 1.3361 -4.6181 -1.4157 17 8 1.0201 -4.4875 -2.5792 18 6 1.3223 -5.9846 -0.7801 19 16 0.7926 -7.2150 -2.0032 20 8 -0.5142 -6.9180 -2.4756 21 8 1.8497 -7.5069 -2.9069 22 7 0.6042 -8.6100 -1.1309 23 6 1.7808 -9.3699 -0.7014 24 6 2.7572 -8.4358 0.0161 25 6 1.3474 -10.4850 0.2524 26 6 2.4665 -9.9826 -1.9242 27 6 1.7573 -2.1572 -1.1831 28 1 -0.3633 0.0610 1.0259 29 1 -0.3634 0.8579 -0.5658 30 1 -0.3633 -0.9190 -0.4600 31 1 -0.0875 3.1331 1.2653 32 1 0.7620 -2.0023 1.4856 33 1 2.4480 -1.8779 2.0908 34 1 3.1680 -3.7837 0.8138 35 1 1.5142 -4.2842 1.2824 36 1 2.3235 -6.2308 -0.4265 37 1 0.6290 -5.9870 0.0610 38 1 -0.2851 -8.9240 -0.9043 39 1 2.2687 -7.9993 0.8873 40 1 3.6324 -9.0013 0.3361 41 1 3.0659 -7.6414 -0.6634 42 1 0.6519 -11.1505 -0.2587 43 1 2.2229 -11.0501 0.5723 44 1 0.8590 -10.0485 1.1236 45 1 2.9298 -9.1924 -2.5150 46 1 3.2309 -10.6874 -1.5971 47 1 1.7272 -10.5046 -2.5318 48 1 0.7730 -1.8469 -1.5336 49 1 2.4824 -2.0819 -1.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194104221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:16 Heat of formation + Delta-G solvation = -68.589748 kcal Electronic energy + Delta-G solvation = -29975.626422 eV Core-core repulsion = 25873.416224 eV Total energy + Delta-G solvation = -4102.210198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.03666 -38.53995 -37.69905 -37.04741 -36.01649 -34.94776 -32.06957 -31.35977 -30.82091 -29.82779 -28.10287 -27.70706 -27.36591 -26.11583 -23.72442 -22.43246 -21.08020 -19.92223 -19.32319 -19.16031 -18.11638 -17.22728 -16.90424 -16.84295 -16.56915 -16.05138 -15.40152 -15.11628 -14.84032 -14.66506 -14.32049 -14.12693 -13.64917 -13.44033 -13.42089 -13.27148 -12.93851 -12.65009 -12.60647 -12.47212 -12.41471 -12.26322 -12.15372 -11.93990 -11.87226 -11.84958 -11.76877 -11.52670 -11.22375 -11.05165 -10.93464 -10.81081 -10.68911 -10.49891 -10.34536 -10.24441 -10.00380 -9.91645 -9.86612 -8.61125 -8.55645 -6.95087 -5.82972 -3.23688 -0.02634 2.40198 2.48716 2.90132 3.35184 3.41786 3.43221 3.66985 3.92696 4.07945 4.23713 4.33263 4.42249 4.49382 4.61732 4.75187 4.87650 4.92445 5.04247 5.11189 5.14189 5.19918 5.24948 5.40823 5.42027 5.45781 5.49343 5.58109 5.62531 5.63750 5.78199 5.87735 5.88307 6.16745 6.17258 6.26001 6.35238 6.50758 6.63425 6.73326 6.75581 7.31585 7.46486 7.61218 7.73579 7.92739 8.26514 9.12097 9.75710 10.21920 11.23103 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027587 B = 0.002295 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.727220 B =12198.783407 C =12484.974737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.095 3.905 15 N -0.598 5.598 16 C 0.551 3.449 17 O -0.542 6.542 18 C -0.681 4.681 19 S 2.645 3.355 20 O -0.939 6.939 21 O -0.938 6.938 22 N -1.115 6.115 23 C 0.173 3.827 24 C -0.193 4.193 25 C -0.150 4.150 26 C -0.181 4.181 27 C 0.081 3.919 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.417 0.583 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -26.192 3.335 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.028 4.028 15 N -0.330 5.330 16 C 0.336 3.664 17 O -0.421 6.421 18 C -0.808 4.808 19 S 2.732 3.268 20 O -0.929 6.929 21 O -0.928 6.928 22 N -0.874 5.874 23 C 0.085 3.915 24 C -0.251 4.251 25 C -0.208 4.208 26 C -0.239 4.239 27 C -0.043 4.043 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.535 -25.777 1.799 26.080 hybrid contribution 0.091 0.972 0.952 1.363 sum 3.626 -24.805 2.751 25.219 Atomic orbital electron populations 1.20837 0.82226 0.96262 0.99280 1.43917 1.01998 0.99868 1.84863 1.19196 0.95516 0.84216 1.40217 0.90979 1.24899 0.97720 0.98279 0.98614 1.70109 1.18351 1.26795 1.39583 0.86319 0.78207 0.83428 0.78498 1.20989 1.21631 1.20918 1.21272 0.96463 0.85951 0.90018 0.90086 1.23423 1.03133 0.92261 1.00508 1.22481 0.99677 0.99842 0.80785 1.48341 1.64477 1.07600 1.12583 1.18719 0.78026 0.83853 0.85785 1.90851 1.49581 1.85618 1.16048 1.31573 1.15371 1.12057 1.21760 1.04183 0.74742 0.73395 0.74434 1.93602 1.38263 1.83972 1.77075 1.93554 1.58618 1.82040 1.58604 1.56031 1.14475 1.40976 1.75920 1.20156 0.84378 0.92005 0.94976 1.22783 1.00626 1.00503 1.01177 1.22064 1.02408 0.97571 0.98796 1.22620 1.01059 1.02749 0.97492 1.22936 1.03052 0.78873 0.99391 0.95376 0.93032 0.97977 0.93557 0.90424 0.90060 0.91119 0.91170 0.81951 0.82425 0.74852 0.90849 0.89507 0.91828 0.91664 0.90912 0.91742 0.88847 0.91694 0.91935 0.90283 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.72 59.85 0.46 4.25 16 2 N -0.59 -13.95 2.95 -171.38 -0.50 -14.45 16 3 C -0.26 -6.90 9.66 -15.06 -0.15 -7.05 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 0.09 5.00 -17.43 -0.09 0.01 16 6 N -0.90 -25.57 10.66 55.49 0.59 -24.98 16 7 Si 0.91 21.35 29.59 -169.99 -5.03 16.32 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.27 3.44 -66.10 -0.23 3.05 16 12 H 0.08 1.48 7.90 -51.93 -0.41 1.07 16 13 C -0.15 -2.37 6.65 -24.59 -0.16 -2.53 16 14 C 0.10 1.14 6.69 -2.53 -0.02 1.13 16 15 N -0.60 -9.19 3.33 -170.51 -0.57 -9.76 16 16 C 0.55 8.68 7.87 -10.99 -0.09 8.59 16 17 O -0.54 -10.83 15.94 0.93 0.01 -10.81 16 18 C -0.68 -6.91 4.69 36.01 0.17 -6.74 16 19 S 2.65 31.83 4.24 -107.50 -0.46 31.38 16 20 O -0.94 -15.20 17.77 -61.28 -1.09 -16.29 16 21 O -0.94 -13.52 14.43 -57.54 -0.83 -14.35 16 22 N -1.11 -8.23 5.43 0.54 0.00 -8.23 16 23 C 0.17 1.06 1.09 -131.82 -0.14 0.92 16 24 C -0.19 -0.98 6.96 37.16 0.26 -0.72 16 25 C -0.15 -0.59 8.58 37.16 0.32 -0.27 16 26 C -0.18 -1.35 8.14 37.16 0.30 -1.05 16 27 C 0.08 1.48 6.41 -3.06 -0.02 1.46 16 28 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 29 H 0.05 1.35 6.95 -51.93 -0.36 0.99 16 30 H 0.00 0.04 6.25 -51.93 -0.32 -0.28 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.08 1.33 7.28 -51.93 -0.38 0.95 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 36 H 0.16 1.15 5.11 -51.93 -0.27 0.89 16 37 H 0.16 1.08 7.85 -51.92 -0.41 0.67 16 38 H 0.42 2.28 8.60 -34.48 -0.30 1.99 16 39 H 0.07 0.26 7.95 -51.93 -0.41 -0.16 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.39 4.98 -51.93 -0.26 0.13 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.91 5.82 -51.93 -0.30 0.61 16 46 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 47 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.08 1.60 6.10 -51.93 -0.32 1.29 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -36.01 387.77 -9.27 -45.28 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.86 Total: -0.99 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.62 Total: 1.04 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.48 Total: -57.42 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.90 Total: -41.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 31.83 SS G_CDS: -0.46 Total: 31.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.01 -9.27 -45.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194104221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.313 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds