Wall clock time and date at job start Wed Apr 1 2020 05:14:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36939 * 119.99814 * 2 1
4 4 H 1.07994 * 120.00294 * 197.21522 * 3 2 1
5 5 C 1.38816 * 119.99673 * 17.21213 * 3 2 1
6 6 N 1.31616 * 120.00237 * 17.75456 * 5 3 2
7 7 Si 1.86803 * 119.99816 * 197.74652 * 5 3 2
8 8 H 1.48506 * 109.46924 * 60.00332 * 7 5 3
9 9 H 1.48500 * 109.47093 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47387 * 300.00606 * 7 5 3
11 11 C 1.46500 * 120.00074 * 180.02562 * 2 1 3
12 12 H 1.09001 * 110.63751 * 178.30851 * 11 2 1
13 13 C 1.55150 * 110.72001 * 301.45081 * 11 2 1
14 14 C 1.54908 * 101.58043 * 154.04697 * 13 11 2
15 15 N 1.47426 * 104.83332 * 322.98674 * 14 13 11
16 16 C 1.34771 * 125.65184 * 204.09593 * 15 14 13
17 17 O 1.21276 * 120.00326 * 180.02562 * 16 15 14
18 18 C 1.50704 * 120.00165 * 0.02659 * 16 15 14
19 19 S 1.81395 * 109.47205 * 179.97438 * 18 16 15
20 20 O 1.42096 * 110.54385 * 299.76607 * 19 18 16
21 21 O 1.42103 * 110.54369 * 76.52282 * 19 18 16
22 22 N 1.65605 * 104.44683 * 188.14663 * 19 18 16
23 23 C 1.46505 * 119.99929 * 284.15500 * 22 19 18
24 24 C 1.52996 * 109.46865 * 51.65309 * 23 22 19
25 25 C 1.52995 * 109.46804 * 171.65654 * 23 22 19
26 26 C 1.53000 * 109.47128 * 291.65573 * 23 22 19
27 27 C 1.47028 * 108.70138 * 24.13076 * 15 14 13
28 28 H 1.09004 * 109.46829 * 273.40244 * 1 2 3
29 29 H 1.08998 * 109.47302 * 33.40681 * 1 2 3
30 30 H 1.09005 * 109.47064 * 153.41262 * 1 2 3
31 31 H 0.97000 * 120.00204 * 180.02562 * 6 5 3
32 32 H 1.08993 * 111.00841 * 35.96858 * 13 11 2
33 33 H 1.09007 * 111.00543 * 272.11649 * 13 11 2
34 34 H 1.08999 * 110.37079 * 81.82528 * 14 13 11
35 35 H 1.09006 * 110.36573 * 204.14904 * 14 13 11
36 36 H 1.08998 * 109.46599 * 299.99987 * 18 16 15
37 37 H 1.09001 * 109.46859 * 59.99713 * 18 16 15
38 38 H 0.96994 * 120.00409 * 104.15710 * 22 19 18
39 39 H 1.08999 * 109.47452 * 60.00554 * 24 23 22
40 40 H 1.09006 * 109.46861 * 179.97438 * 24 23 22
41 41 H 1.08998 * 109.47264 * 299.99836 * 24 23 22
42 42 H 1.08994 * 109.47895 * 60.00150 * 25 23 22
43 43 H 1.09000 * 109.46825 * 180.02562 * 25 23 22
44 44 H 1.08999 * 109.47287 * 299.99307 * 25 23 22
45 45 H 1.08999 * 109.47181 * 69.95089 * 26 23 22
46 46 H 1.08992 * 109.47161 * 189.95664 * 26 23 22
47 47 H 1.09008 * 109.47024 * 309.95543 * 26 23 22
48 48 H 1.08999 * 109.88413 * 239.52856 * 27 15 14
49 49 H 1.09001 * 109.88195 * 118.35714 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1933 1.2070 -0.2768
5 6 1.5021 2.3611 0.3557
6 7 0.3652 2.3119 1.0170
7 14 2.2445 4.0126 -0.1039
8 1 2.3700 4.1050 -1.5807
9 1 1.3662 5.1042 0.3880
10 1 3.5878 4.1412 0.5160
11 6 2.1975 -1.2687 -0.0006
12 1 3.2727 -1.0916 -0.0306
13 6 1.8163 -2.1232 1.2370
14 6 2.1055 -3.5568 0.7261
15 7 1.6994 -3.5415 -0.6910
16 6 1.3361 -4.6181 -1.4157
17 8 1.0201 -4.4875 -2.5792
18 6 1.3223 -5.9846 -0.7801
19 16 0.7926 -7.2150 -2.0032
20 8 -0.5142 -6.9180 -2.4756
21 8 1.8497 -7.5069 -2.9069
22 7 0.6042 -8.6100 -1.1309
23 6 1.7808 -9.3699 -0.7014
24 6 2.7572 -8.4358 0.0161
25 6 1.3474 -10.4850 0.2524
26 6 2.4665 -9.9826 -1.9242
27 6 1.7573 -2.1572 -1.1831
28 1 -0.3633 0.0610 1.0259
29 1 -0.3634 0.8579 -0.5658
30 1 -0.3633 -0.9190 -0.4600
31 1 -0.0875 3.1331 1.2653
32 1 0.7620 -2.0023 1.4856
33 1 2.4480 -1.8779 2.0908
34 1 3.1680 -3.7837 0.8138
35 1 1.5142 -4.2842 1.2824
36 1 2.3235 -6.2308 -0.4265
37 1 0.6290 -5.9870 0.0610
38 1 -0.2851 -8.9240 -0.9043
39 1 2.2687 -7.9993 0.8873
40 1 3.6324 -9.0013 0.3361
41 1 3.0659 -7.6414 -0.6634
42 1 0.6519 -11.1505 -0.2587
43 1 2.2229 -11.0501 0.5723
44 1 0.8590 -10.0485 1.1236
45 1 2.9298 -9.1924 -2.5150
46 1 3.2309 -10.6874 -1.5971
47 1 1.7272 -10.5046 -2.5318
48 1 0.7730 -1.8469 -1.5336
49 1 2.4824 -2.0819 -1.9935
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001194104221.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:15
Heat of formation + Delta-G solvation = -96.618135 kcal
Electronic energy + Delta-G solvation = -29976.841824 eV
Core-core repulsion = 25873.416224 eV
Total energy + Delta-G solvation = -4103.425600 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.30879 -39.16710 -39.07471 -37.99245 -37.04082 -36.65070 -33.67655 -32.15075
-31.91562 -31.10610 -29.24116 -28.16800 -28.10824 -27.99784 -25.28657 -23.89147
-21.73848 -21.07705 -20.67709 -20.10067 -19.04113 -18.96777 -18.03429 -17.79766
-17.63083 -17.29661 -16.61175 -16.28275 -16.01357 -15.75679 -15.16411 -15.15058
-15.00196 -14.67472 -14.52535 -14.30071 -14.12551 -13.88131 -13.81179 -13.30645
-13.25686 -13.20083 -13.03896 -12.99975 -12.88999 -12.86223 -12.57182 -12.51520
-12.41779 -12.39017 -12.34679 -12.28953 -12.11521 -11.97237 -11.81034 -11.55203
-11.50543 -11.39187 -10.62001 -10.53440 -9.83358 -8.90031 -7.87114 -5.28536
-0.92680 1.23248 1.46479 1.50814 1.55908 1.59572 1.87247 2.50156
2.77010 3.05041 3.18465 3.27480 3.52725 3.71991 3.79344 3.84278
3.94416 4.01353 4.09827 4.11453 4.24348 4.30488 4.40146 4.42938
4.62305 4.69223 4.72312 4.82586 4.88878 4.92936 4.95337 5.02862
5.03625 5.08590 5.19399 5.20860 5.32512 5.36494 5.36805 5.46634
5.59827 5.60080 5.67704 6.14850 6.25368 6.29312 6.72743 7.10269
7.82058 8.24878 9.17914
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.027587 B = 0.002295 C = 0.002242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1014.727220 B =12198.783407 C =12484.974737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.179 3.821
2 N -0.603 5.603
3 C -0.266 4.266
4 H 0.079 0.921
5 C -0.052 4.052
6 N -0.935 5.935
7 Si 0.966 3.034
8 H -0.284 1.284
9 H -0.297 1.297
10 H -0.271 1.271
11 C 0.166 3.834
12 H 0.088 0.912
13 C -0.145 4.145
14 C 0.099 3.901
15 N -0.598 5.598
16 C 0.539 3.461
17 O -0.596 6.596
18 C -0.663 4.663
19 S 2.645 3.355
20 O -0.992 6.992
21 O -0.972 6.972
22 N -1.097 6.097
23 C 0.167 3.833
24 C -0.202 4.202
25 C -0.146 4.146
26 C -0.187 4.187
27 C 0.089 3.911
28 H 0.009 0.991
29 H 0.018 0.982
30 H 0.020 0.980
31 H 0.248 0.752
32 H 0.059 0.941
33 H 0.094 0.906
34 H 0.106 0.894
35 H 0.113 0.887
36 H 0.202 0.798
37 H 0.201 0.799
38 H 0.427 0.573
39 H 0.099 0.901
40 H 0.104 0.896
41 H 0.051 0.949
42 H 0.062 0.938
43 H 0.087 0.913
44 H 0.078 0.922
45 H 0.066 0.934
46 H 0.085 0.915
47 H 0.051 0.949
48 H 0.049 0.951
49 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.565 -28.588 5.946 29.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 N -0.325 5.325
3 C -0.396 4.396
4 H 0.096 0.904
5 C -0.247 4.247
6 N -0.582 5.582
7 Si 0.795 3.205
8 H -0.211 1.211
9 H -0.223 1.223
10 H -0.197 1.197
11 C 0.057 3.943
12 H 0.106 0.894
13 C -0.185 4.185
14 C -0.022 4.022
15 N -0.329 5.329
16 C 0.327 3.673
17 O -0.478 6.478
18 C -0.791 4.791
19 S 2.735 3.265
20 O -0.982 6.982
21 O -0.962 6.962
22 N -0.860 5.860
23 C 0.080 3.920
24 C -0.260 4.260
25 C -0.205 4.205
26 C -0.246 4.246
27 C -0.036 4.036
28 H 0.027 0.973
29 H 0.037 0.963
30 H 0.038 0.962
31 H 0.058 0.942
32 H 0.077 0.923
33 H 0.113 0.887
34 H 0.124 0.876
35 H 0.131 0.869
36 H 0.219 0.781
37 H 0.219 0.781
38 H 0.264 0.736
39 H 0.117 0.883
40 H 0.123 0.877
41 H 0.070 0.930
42 H 0.081 0.919
43 H 0.106 0.894
44 H 0.097 0.903
45 H 0.085 0.915
46 H 0.104 0.896
47 H 0.070 0.930
48 H 0.067 0.933
49 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 5.323 -28.239 4.416 29.074
hybrid contribution -0.390 1.612 0.124 1.663
sum 4.933 -26.627 4.540 27.458
Atomic orbital electron populations
1.20474 0.82942 0.95604 0.97576 1.44069 1.01908 1.01188 1.85300
1.19558 0.95849 0.85378 1.38782 0.90364 1.25629 0.98465 1.01341
0.99269 1.70251 1.19774 1.26948 1.41194 0.85354 0.77738 0.79566
0.77873 1.21091 1.22296 1.19677 1.21489 0.96288 0.84562 0.91969
0.89396 1.23259 1.02211 0.93938 0.99079 1.22759 1.02628 0.98282
0.78528 1.48402 1.64266 1.06237 1.14014 1.19575 0.76790 0.85596
0.85325 1.90837 1.51652 1.86672 1.18671 1.31512 1.18818 1.07133
1.21680 1.03757 0.73240 0.74359 0.75119 1.93536 1.40589 1.85141
1.78944 1.93523 1.59083 1.82780 1.60817 1.55646 1.15766 1.39248
1.75337 1.20404 0.83948 0.92863 0.94829 1.22905 1.01234 1.00256
1.01616 1.22067 1.03169 0.96753 0.98515 1.22675 1.01473 1.02409
0.98042 1.22571 1.01103 0.80972 0.98981 0.97301 0.96301 0.96171
0.94244 0.92266 0.88731 0.87633 0.86869 0.78108 0.78134 0.73583
0.88254 0.87745 0.93043 0.91853 0.89421 0.90292 0.91469 0.89577
0.92959 0.93253 0.92096
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.83 7.72 127.77 0.99 9.82 16
2 N -0.60 -28.95 2.95 -696.14 -2.05 -31.00 16
3 C -0.27 -14.06 9.66 84.03 0.81 -13.24 16
4 H 0.08 3.94 7.82 -2.91 -0.02 3.92 16
5 C -0.05 -2.84 5.00 84.86 0.42 -2.41 16
6 N -0.94 -54.24 10.66 21.65 0.23 -54.01 16
7 Si 0.97 44.37 29.59 68.60 2.03 46.40 16
8 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16
9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16
10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
11 C 0.17 6.06 3.44 46.18 0.16 6.22 16
12 H 0.09 3.08 7.90 -2.39 -0.02 3.06 16
13 C -0.14 -4.08 6.65 31.98 0.21 -3.87 16
14 C 0.10 1.90 6.69 86.85 0.58 2.48 16
15 N -0.60 -16.93 3.33 -811.77 -2.70 -19.63 16
16 C 0.54 16.05 7.87 87.66 0.69 16.74 16
17 O -0.60 -24.19 15.94 1.41 0.02 -24.17 16
18 C -0.66 -11.06 4.69 71.24 0.33 -10.72 16
19 S 2.64 61.23 4.24 -56.49 -0.24 61.00 16
20 O -0.99 -32.67 17.77 -124.07 -2.20 -34.88 16
21 O -0.97 -28.32 14.43 -127.65 -1.84 -30.16 16
22 N -1.10 -13.74 5.43 -152.22 -0.83 -14.57 16
23 C 0.17 1.54 1.09 3.60 0.00 1.54 16
24 C -0.20 -1.15 6.96 71.98 0.50 -0.65 16
25 C -0.15 -0.58 8.58 71.98 0.62 0.04 16
26 C -0.19 -2.54 8.14 71.98 0.59 -1.95 16
27 C 0.09 3.19 6.41 86.73 0.56 3.75 16
28 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16
29 H 0.02 1.01 6.95 -2.39 -0.02 1.00 16
30 H 0.02 0.89 6.25 -2.38 -0.01 0.88 16
31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16
32 H 0.06 1.91 7.28 -2.39 -0.02 1.89 16
33 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16
34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16
35 H 0.11 1.30 7.48 -2.38 -0.02 1.29 16
36 H 0.20 1.80 5.11 -2.39 -0.01 1.78 16
37 H 0.20 1.59 7.85 -2.39 -0.02 1.57 16
38 H 0.43 3.73 8.60 -96.75 -0.83 2.90 16
39 H 0.10 0.06 7.95 -2.39 -0.02 0.05 16
40 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16
41 H 0.05 0.43 4.98 -2.39 -0.01 0.42 16
42 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16
43 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16
44 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16
45 H 0.07 1.30 5.82 -2.39 -0.01 1.29 16
46 H 0.09 0.74 8.11 -2.39 -0.02 0.73 16
47 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16
48 H 0.05 2.06 6.10 -2.39 -0.01 2.04 16
49 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
Total: -1.00 -84.68 387.77 -0.99 -85.67
By element:
Atomic # 1 Polarization: 7.50 SS G_CDS: 0.13 Total: 7.62 kcal
Atomic # 6 Polarization: 1.27 SS G_CDS: 6.46 Total: 7.73 kcal
Atomic # 7 Polarization: -113.86 SS G_CDS: -5.35 Total: -119.21 kcal
Atomic # 8 Polarization: -85.19 SS G_CDS: -4.02 Total: -89.21 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal
Atomic # 16 Polarization: 61.23 SS G_CDS: -0.24 Total: 61.00 kcal
Total: -84.68 -0.99 -85.67 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001194104221.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal
(2) G-P(sol) polarization free energy of solvation -84.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds