Wall clock time and date at job start Wed Apr 1 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99814 * 2 1 4 4 H 1.07994 * 120.00294 * 197.21522 * 3 2 1 5 5 C 1.38816 * 119.99673 * 17.21213 * 3 2 1 6 6 N 1.31616 * 120.00237 * 17.75456 * 5 3 2 7 7 Si 1.86803 * 119.99816 * 197.74652 * 5 3 2 8 8 H 1.48506 * 109.46924 * 60.00332 * 7 5 3 9 9 H 1.48500 * 109.47093 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47387 * 300.00606 * 7 5 3 11 11 C 1.46500 * 120.00074 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.63751 * 178.30851 * 11 2 1 13 13 C 1.55150 * 110.72001 * 301.45081 * 11 2 1 14 14 C 1.54908 * 101.58043 * 154.04697 * 13 11 2 15 15 N 1.47426 * 104.83332 * 322.98674 * 14 13 11 16 16 C 1.34771 * 125.65184 * 204.09593 * 15 14 13 17 17 O 1.21276 * 120.00326 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.00165 * 0.02659 * 16 15 14 19 19 S 1.81395 * 109.47205 * 179.97438 * 18 16 15 20 20 O 1.42096 * 110.54385 * 299.76607 * 19 18 16 21 21 O 1.42103 * 110.54369 * 76.52282 * 19 18 16 22 22 N 1.65605 * 104.44683 * 188.14663 * 19 18 16 23 23 C 1.46505 * 119.99929 * 284.15500 * 22 19 18 24 24 C 1.52996 * 109.46865 * 51.65309 * 23 22 19 25 25 C 1.52995 * 109.46804 * 171.65654 * 23 22 19 26 26 C 1.53000 * 109.47128 * 291.65573 * 23 22 19 27 27 C 1.47028 * 108.70138 * 24.13076 * 15 14 13 28 28 H 1.09004 * 109.46829 * 273.40244 * 1 2 3 29 29 H 1.08998 * 109.47302 * 33.40681 * 1 2 3 30 30 H 1.09005 * 109.47064 * 153.41262 * 1 2 3 31 31 H 0.97000 * 120.00204 * 180.02562 * 6 5 3 32 32 H 1.08993 * 111.00841 * 35.96858 * 13 11 2 33 33 H 1.09007 * 111.00543 * 272.11649 * 13 11 2 34 34 H 1.08999 * 110.37079 * 81.82528 * 14 13 11 35 35 H 1.09006 * 110.36573 * 204.14904 * 14 13 11 36 36 H 1.08998 * 109.46599 * 299.99987 * 18 16 15 37 37 H 1.09001 * 109.46859 * 59.99713 * 18 16 15 38 38 H 0.96994 * 120.00409 * 104.15710 * 22 19 18 39 39 H 1.08999 * 109.47452 * 60.00554 * 24 23 22 40 40 H 1.09006 * 109.46861 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.47264 * 299.99836 * 24 23 22 42 42 H 1.08994 * 109.47895 * 60.00150 * 25 23 22 43 43 H 1.09000 * 109.46825 * 180.02562 * 25 23 22 44 44 H 1.08999 * 109.47287 * 299.99307 * 25 23 22 45 45 H 1.08999 * 109.47181 * 69.95089 * 26 23 22 46 46 H 1.08992 * 109.47161 * 189.95664 * 26 23 22 47 47 H 1.09008 * 109.47024 * 309.95543 * 26 23 22 48 48 H 1.08999 * 109.88413 * 239.52856 * 27 15 14 49 49 H 1.09001 * 109.88195 * 118.35714 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1933 1.2070 -0.2768 5 6 1.5021 2.3611 0.3557 6 7 0.3652 2.3119 1.0170 7 14 2.2445 4.0126 -0.1039 8 1 2.3700 4.1050 -1.5807 9 1 1.3662 5.1042 0.3880 10 1 3.5878 4.1412 0.5160 11 6 2.1975 -1.2687 -0.0006 12 1 3.2727 -1.0916 -0.0306 13 6 1.8163 -2.1232 1.2370 14 6 2.1055 -3.5568 0.7261 15 7 1.6994 -3.5415 -0.6910 16 6 1.3361 -4.6181 -1.4157 17 8 1.0201 -4.4875 -2.5792 18 6 1.3223 -5.9846 -0.7801 19 16 0.7926 -7.2150 -2.0032 20 8 -0.5142 -6.9180 -2.4756 21 8 1.8497 -7.5069 -2.9069 22 7 0.6042 -8.6100 -1.1309 23 6 1.7808 -9.3699 -0.7014 24 6 2.7572 -8.4358 0.0161 25 6 1.3474 -10.4850 0.2524 26 6 2.4665 -9.9826 -1.9242 27 6 1.7573 -2.1572 -1.1831 28 1 -0.3633 0.0610 1.0259 29 1 -0.3634 0.8579 -0.5658 30 1 -0.3633 -0.9190 -0.4600 31 1 -0.0875 3.1331 1.2653 32 1 0.7620 -2.0023 1.4856 33 1 2.4480 -1.8779 2.0908 34 1 3.1680 -3.7837 0.8138 35 1 1.5142 -4.2842 1.2824 36 1 2.3235 -6.2308 -0.4265 37 1 0.6290 -5.9870 0.0610 38 1 -0.2851 -8.9240 -0.9043 39 1 2.2687 -7.9993 0.8873 40 1 3.6324 -9.0013 0.3361 41 1 3.0659 -7.6414 -0.6634 42 1 0.6519 -11.1505 -0.2587 43 1 2.2229 -11.0501 0.5723 44 1 0.8590 -10.0485 1.1236 45 1 2.9298 -9.1924 -2.5150 46 1 3.2309 -10.6874 -1.5971 47 1 1.7272 -10.5046 -2.5318 48 1 0.7730 -1.8469 -1.5336 49 1 2.4824 -2.0819 -1.9935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194104221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:15 Heat of formation + Delta-G solvation = -96.618135 kcal Electronic energy + Delta-G solvation = -29976.841824 eV Core-core repulsion = 25873.416224 eV Total energy + Delta-G solvation = -4103.425600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.30879 -39.16710 -39.07471 -37.99245 -37.04082 -36.65070 -33.67655 -32.15075 -31.91562 -31.10610 -29.24116 -28.16800 -28.10824 -27.99784 -25.28657 -23.89147 -21.73848 -21.07705 -20.67709 -20.10067 -19.04113 -18.96777 -18.03429 -17.79766 -17.63083 -17.29661 -16.61175 -16.28275 -16.01357 -15.75679 -15.16411 -15.15058 -15.00196 -14.67472 -14.52535 -14.30071 -14.12551 -13.88131 -13.81179 -13.30645 -13.25686 -13.20083 -13.03896 -12.99975 -12.88999 -12.86223 -12.57182 -12.51520 -12.41779 -12.39017 -12.34679 -12.28953 -12.11521 -11.97237 -11.81034 -11.55203 -11.50543 -11.39187 -10.62001 -10.53440 -9.83358 -8.90031 -7.87114 -5.28536 -0.92680 1.23248 1.46479 1.50814 1.55908 1.59572 1.87247 2.50156 2.77010 3.05041 3.18465 3.27480 3.52725 3.71991 3.79344 3.84278 3.94416 4.01353 4.09827 4.11453 4.24348 4.30488 4.40146 4.42938 4.62305 4.69223 4.72312 4.82586 4.88878 4.92936 4.95337 5.02862 5.03625 5.08590 5.19399 5.20860 5.32512 5.36494 5.36805 5.46634 5.59827 5.60080 5.67704 6.14850 6.25368 6.29312 6.72743 7.10269 7.82058 8.24878 9.17914 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027587 B = 0.002295 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.727220 B =12198.783407 C =12484.974737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.266 4.266 4 H 0.079 0.921 5 C -0.052 4.052 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.284 1.284 9 H -0.297 1.297 10 H -0.271 1.271 11 C 0.166 3.834 12 H 0.088 0.912 13 C -0.145 4.145 14 C 0.099 3.901 15 N -0.598 5.598 16 C 0.539 3.461 17 O -0.596 6.596 18 C -0.663 4.663 19 S 2.645 3.355 20 O -0.992 6.992 21 O -0.972 6.972 22 N -1.097 6.097 23 C 0.167 3.833 24 C -0.202 4.202 25 C -0.146 4.146 26 C -0.187 4.187 27 C 0.089 3.911 28 H 0.009 0.991 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.248 0.752 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.202 0.798 37 H 0.201 0.799 38 H 0.427 0.573 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -28.588 5.946 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.325 5.325 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.197 1.197 11 C 0.057 3.943 12 H 0.106 0.894 13 C -0.185 4.185 14 C -0.022 4.022 15 N -0.329 5.329 16 C 0.327 3.673 17 O -0.478 6.478 18 C -0.791 4.791 19 S 2.735 3.265 20 O -0.982 6.982 21 O -0.962 6.962 22 N -0.860 5.860 23 C 0.080 3.920 24 C -0.260 4.260 25 C -0.205 4.205 26 C -0.246 4.246 27 C -0.036 4.036 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.219 0.781 37 H 0.219 0.781 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.323 -28.239 4.416 29.074 hybrid contribution -0.390 1.612 0.124 1.663 sum 4.933 -26.627 4.540 27.458 Atomic orbital electron populations 1.20474 0.82942 0.95604 0.97576 1.44069 1.01908 1.01188 1.85300 1.19558 0.95849 0.85378 1.38782 0.90364 1.25629 0.98465 1.01341 0.99269 1.70251 1.19774 1.26948 1.41194 0.85354 0.77738 0.79566 0.77873 1.21091 1.22296 1.19677 1.21489 0.96288 0.84562 0.91969 0.89396 1.23259 1.02211 0.93938 0.99079 1.22759 1.02628 0.98282 0.78528 1.48402 1.64266 1.06237 1.14014 1.19575 0.76790 0.85596 0.85325 1.90837 1.51652 1.86672 1.18671 1.31512 1.18818 1.07133 1.21680 1.03757 0.73240 0.74359 0.75119 1.93536 1.40589 1.85141 1.78944 1.93523 1.59083 1.82780 1.60817 1.55646 1.15766 1.39248 1.75337 1.20404 0.83948 0.92863 0.94829 1.22905 1.01234 1.00256 1.01616 1.22067 1.03169 0.96753 0.98515 1.22675 1.01473 1.02409 0.98042 1.22571 1.01103 0.80972 0.98981 0.97301 0.96301 0.96171 0.94244 0.92266 0.88731 0.87633 0.86869 0.78108 0.78134 0.73583 0.88254 0.87745 0.93043 0.91853 0.89421 0.90292 0.91469 0.89577 0.92959 0.93253 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 7.72 127.77 0.99 9.82 16 2 N -0.60 -28.95 2.95 -696.14 -2.05 -31.00 16 3 C -0.27 -14.06 9.66 84.03 0.81 -13.24 16 4 H 0.08 3.94 7.82 -2.91 -0.02 3.92 16 5 C -0.05 -2.84 5.00 84.86 0.42 -2.41 16 6 N -0.94 -54.24 10.66 21.65 0.23 -54.01 16 7 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 8 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 C 0.17 6.06 3.44 46.18 0.16 6.22 16 12 H 0.09 3.08 7.90 -2.39 -0.02 3.06 16 13 C -0.14 -4.08 6.65 31.98 0.21 -3.87 16 14 C 0.10 1.90 6.69 86.85 0.58 2.48 16 15 N -0.60 -16.93 3.33 -811.77 -2.70 -19.63 16 16 C 0.54 16.05 7.87 87.66 0.69 16.74 16 17 O -0.60 -24.19 15.94 1.41 0.02 -24.17 16 18 C -0.66 -11.06 4.69 71.24 0.33 -10.72 16 19 S 2.64 61.23 4.24 -56.49 -0.24 61.00 16 20 O -0.99 -32.67 17.77 -124.07 -2.20 -34.88 16 21 O -0.97 -28.32 14.43 -127.65 -1.84 -30.16 16 22 N -1.10 -13.74 5.43 -152.22 -0.83 -14.57 16 23 C 0.17 1.54 1.09 3.60 0.00 1.54 16 24 C -0.20 -1.15 6.96 71.98 0.50 -0.65 16 25 C -0.15 -0.58 8.58 71.98 0.62 0.04 16 26 C -0.19 -2.54 8.14 71.98 0.59 -1.95 16 27 C 0.09 3.19 6.41 86.73 0.56 3.75 16 28 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 29 H 0.02 1.01 6.95 -2.39 -0.02 1.00 16 30 H 0.02 0.89 6.25 -2.38 -0.01 0.88 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.06 1.91 7.28 -2.39 -0.02 1.89 16 33 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 1.30 7.48 -2.38 -0.02 1.29 16 36 H 0.20 1.80 5.11 -2.39 -0.01 1.78 16 37 H 0.20 1.59 7.85 -2.39 -0.02 1.57 16 38 H 0.43 3.73 8.60 -96.75 -0.83 2.90 16 39 H 0.10 0.06 7.95 -2.39 -0.02 0.05 16 40 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.05 0.43 4.98 -2.39 -0.01 0.42 16 42 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.07 1.30 5.82 -2.39 -0.01 1.29 16 46 H 0.09 0.74 8.11 -2.39 -0.02 0.73 16 47 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.05 2.06 6.10 -2.39 -0.01 2.04 16 49 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -84.68 387.77 -0.99 -85.67 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.13 Total: 7.62 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.46 Total: 7.73 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.35 Total: -119.21 kcal Atomic # 8 Polarization: -85.19 SS G_CDS: -4.02 Total: -89.21 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 61.23 SS G_CDS: -0.24 Total: 61.00 kcal Total: -84.68 -0.99 -85.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194104221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal (2) G-P(sol) polarization free energy of solvation -84.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds