Wall clock time and date at job start Wed Apr 1 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99819 * 2 1 4 4 O 1.20829 * 119.99811 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46782 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46734 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46791 * 180.02562 * 7 6 5 9 9 S 1.81408 * 109.46959 * 180.02562 * 8 7 6 10 10 O 1.42093 * 110.54604 * 68.36984 * 9 8 7 11 11 O 1.42107 * 110.53869 * 291.62116 * 9 8 7 12 12 N 1.65599 * 104.44927 * 179.97438 * 9 8 7 13 13 C 1.46506 * 119.99913 * 89.99600 * 12 9 8 14 14 C 1.50699 * 109.46928 * 95.00113 * 13 12 9 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99749 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00236 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47160 * 89.99730 * 18 16 14 20 20 H 1.48503 * 109.47061 * 209.99752 * 18 16 14 21 21 H 1.48500 * 109.46598 * 329.99398 * 18 16 14 22 22 C 1.46498 * 120.00006 * 269.99834 * 12 9 8 23 23 C 1.54265 * 110.02979 * 237.90771 * 22 12 9 24 24 C 1.54968 * 104.16064 * 217.13319 * 23 22 12 25 25 C 1.54890 * 102.77512 * 37.88792 * 24 23 22 26 26 C 1.53870 * 110.03352 * 120.68852 * 22 12 9 27 27 H 1.08999 * 109.47096 * 299.99145 * 1 2 3 28 28 H 1.08998 * 109.47512 * 59.99770 * 1 2 3 29 29 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47003 * 60.00474 * 5 3 2 31 31 H 1.08998 * 109.46807 * 300.00089 * 5 3 2 32 32 H 1.08997 * 109.47115 * 60.00358 * 6 5 3 33 33 H 1.08990 * 109.47040 * 299.99625 * 6 5 3 34 34 H 1.09001 * 109.47396 * 59.99690 * 7 6 5 35 35 H 1.09002 * 109.47333 * 300.00011 * 7 6 5 36 36 H 1.08997 * 109.47249 * 60.00272 * 8 7 6 37 37 H 1.08998 * 109.47179 * 299.99507 * 8 7 6 38 38 H 1.09004 * 109.47073 * 214.99941 * 13 12 9 39 39 H 1.09000 * 109.47212 * 335.00023 * 13 12 9 40 40 H 0.97001 * 119.99269 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.01704 * 359.29724 * 22 12 9 42 42 H 1.08994 * 110.49157 * 335.78453 * 23 22 12 43 43 H 1.09003 * 110.48561 * 98.42565 * 23 22 12 44 44 H 1.08998 * 110.72049 * 279.58277 * 24 23 22 45 45 H 1.08998 * 110.92581 * 156.29501 * 24 23 22 46 46 H 1.08997 * 110.49215 * 203.40518 * 25 24 23 47 47 H 1.09007 * 110.60109 * 80.81904 * 25 24 23 48 48 H 1.08999 * 110.03154 * 238.56971 * 26 22 12 49 49 H 1.09000 * 110.03535 * 0.02562 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0000 2.7422 0.0002 7 6 5.5279 2.8223 0.0002 8 6 5.9616 4.2895 0.0017 9 16 7.7732 4.3845 0.0010 10 8 8.2963 3.9222 -1.2366 11 8 8.2973 3.9196 1.2373 12 7 8.1019 6.0075 0.0019 13 6 8.2477 6.7247 1.2711 14 6 9.7062 6.7948 1.6437 15 1 10.4502 6.3500 0.9993 16 6 10.0910 7.4276 2.8066 17 7 11.3639 7.4883 3.1320 18 14 8.8043 8.1974 3.9208 19 1 8.3439 7.1931 4.9130 20 1 9.3960 9.3597 4.6310 21 1 7.6503 8.6516 3.1040 22 6 8.2468 6.7263 -1.2664 23 6 9.6350 7.3951 -1.3391 24 6 9.3691 8.7434 -2.0554 25 6 7.9999 9.1756 -1.4747 26 6 7.2074 7.8576 -1.3529 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9556 0.7810 -0.8908 31 1 3.9563 0.7806 0.8891 32 1 3.6107 3.2357 0.8907 33 1 3.6099 3.2368 -0.8893 34 1 5.9177 2.3286 -0.8900 35 1 5.9177 2.3277 0.8900 36 1 5.5719 4.7827 0.8921 37 1 5.5719 4.7844 -0.8879 38 1 7.8507 7.7343 1.1656 39 1 7.6983 6.1979 2.0513 40 1 11.6344 7.9332 3.9504 41 1 8.1198 6.0379 -2.1020 42 1 10.0288 7.5667 -0.3374 43 1 10.3236 6.7824 -1.9210 44 1 9.3034 8.6006 -3.1340 45 1 10.1406 9.4733 -1.8101 46 1 7.4962 9.8620 -2.1553 47 1 8.1270 9.6362 -0.4949 48 1 6.5766 7.7188 -2.2309 49 1 6.5955 7.8722 -0.4510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196937861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:58 Heat of formation + Delta-G solvation = -172.514894 kcal Electronic energy + Delta-G solvation = -29512.960754 eV Core-core repulsion = 25373.951273 eV Total energy + Delta-G solvation = -4139.009481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.79391 -38.26030 -37.10875 -36.55827 -35.74745 -35.31891 -34.07627 -32.24740 -31.39770 -28.46013 -28.21800 -28.12068 -26.22822 -25.29050 -22.25567 -21.92596 -20.88869 -20.20542 -19.64482 -18.06083 -17.91867 -17.23192 -17.09843 -16.94855 -16.81573 -16.07888 -15.82717 -15.49579 -14.91702 -14.62004 -14.20317 -14.07457 -13.97182 -13.25254 -13.21378 -13.03450 -12.65245 -12.62576 -12.52486 -12.41470 -12.22775 -11.91073 -11.80436 -11.74445 -11.63784 -11.49239 -11.27408 -11.19872 -10.94674 -10.92284 -10.84666 -10.78230 -10.70056 -10.49833 -10.42878 -10.26564 -10.20791 -10.04221 -9.95966 -9.24762 -8.55496 -8.03653 -6.06636 -4.03460 0.73344 1.86271 2.35351 3.21723 3.28705 3.32282 3.36575 4.22157 4.32650 4.39031 4.43502 4.54125 4.65639 4.71426 4.79287 4.81259 4.97352 5.01026 5.06824 5.10139 5.17262 5.21154 5.22927 5.31229 5.40041 5.45449 5.69122 5.72377 5.83023 5.87651 5.94915 6.02604 6.03613 6.05493 6.14247 6.15610 6.26533 6.36521 6.54721 6.65225 6.81136 6.81728 7.09690 7.33222 7.38850 7.53112 7.62353 8.51099 8.98712 9.52408 11.06120 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002764 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.860019 B =10127.484452 C =10919.203198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.119 4.119 6 C -0.101 4.101 7 C -0.111 4.111 8 C -0.644 4.644 9 S 2.601 3.399 10 O -0.969 6.969 11 O -0.934 6.934 12 N -0.974 5.974 13 C 0.224 3.776 14 C -0.521 4.521 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.867 3.133 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.152 3.848 23 C -0.151 4.151 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.138 4.138 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 -8.542 -9.128 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.394 6.394 5 C -0.156 4.156 6 C -0.140 4.140 7 C -0.150 4.150 8 C -0.771 4.771 9 S 2.693 3.307 10 O -0.959 6.959 11 O -0.924 6.924 12 N -0.811 5.811 13 C 0.101 3.899 14 C -0.560 4.560 15 H 0.102 0.898 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.694 3.306 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.046 3.954 23 C -0.190 4.190 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.177 4.177 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.528 -8.880 -8.964 21.597 hybrid contribution -1.557 0.859 0.735 1.924 sum -19.085 -8.021 -8.229 22.277 Atomic orbital electron populations 1.23268 0.76313 1.03710 1.02600 1.86517 1.23519 1.33663 1.84162 1.23919 0.92385 0.81249 0.72121 1.90687 1.67326 1.36354 1.45082 1.21517 0.87160 1.00483 1.06462 1.21410 0.94560 0.93557 1.04465 1.21277 0.96853 0.92967 1.03859 1.30873 1.30605 1.04256 1.11360 1.05285 0.77048 0.73958 0.74422 1.93527 1.76343 1.80160 1.45874 1.93643 1.75113 1.79312 1.44361 1.57347 1.84203 1.27187 1.12411 1.19433 0.98601 0.92683 0.79190 1.21342 0.91069 1.36268 1.07295 0.89771 1.24866 0.95051 0.95853 0.97167 1.69895 1.14994 1.43540 1.24764 0.86998 0.82400 0.79446 0.81754 1.19939 1.21109 1.18951 1.21377 0.95905 0.93488 0.84662 1.23169 0.95961 0.94602 1.05268 1.22423 0.96856 0.97926 0.98660 1.22278 0.95916 0.96476 1.01024 1.22586 0.98134 0.95512 1.01501 0.91860 0.91891 0.88069 0.87188 0.87116 0.90414 0.90515 0.90188 0.89985 0.85123 0.85447 0.94554 0.95504 0.92595 0.89479 0.85399 0.92410 0.92622 0.91783 0.92637 0.91260 0.92146 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.18 10.57 -39.25 -0.41 -3.60 16 3 C 0.46 4.51 7.96 36.00 0.29 4.80 16 4 O -0.51 -6.47 15.73 -18.75 -0.29 -6.77 16 5 C -0.12 -0.89 5.81 -27.88 -0.16 -1.06 16 6 C -0.10 -0.94 4.51 -26.73 -0.12 -1.06 16 7 C -0.11 -1.15 5.22 -26.73 -0.14 -1.29 16 8 C -0.64 -7.86 6.18 37.16 0.23 -7.63 16 9 S 2.60 46.31 5.36 -107.50 -0.58 45.73 16 10 O -0.97 -18.72 16.58 -57.54 -0.95 -19.68 16 11 O -0.93 -20.64 16.99 -57.54 -0.98 -21.62 16 12 N -0.97 -18.55 2.64 -107.38 -0.28 -18.83 16 13 C 0.22 4.96 3.56 -5.19 -0.02 4.94 16 14 C -0.52 -14.01 7.79 -34.44 -0.27 -14.28 16 15 H 0.08 2.50 7.18 -52.48 -0.38 2.12 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 18 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 22 C 0.15 2.58 3.24 -66.82 -0.22 2.36 16 23 C -0.15 -2.77 6.29 -25.03 -0.16 -2.93 16 24 C -0.12 -1.80 6.91 -24.70 -0.17 -1.98 16 25 C -0.12 -1.70 6.83 -25.07 -0.17 -1.87 16 26 C -0.14 -1.96 6.03 -25.61 -0.15 -2.12 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.04 0.77 5.86 -51.93 -0.30 0.47 16 39 H 0.03 0.59 7.04 -51.93 -0.37 0.23 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 1.37 6.90 -51.93 -0.36 1.01 16 42 H 0.13 2.84 4.41 -51.93 -0.23 2.61 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 1.03 6.88 -51.93 -0.36 0.68 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -35.29 401.30 -9.78 -45.07 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.34 Total: 2.60 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.09 Total: -18.87 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.49 Total: -44.77 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -2.64 Total: -51.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.58 Total: 45.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.29 -9.78 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196937861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.442 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds