Wall clock time and date at job start Wed Apr 1 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48507 * 109.46889 * 91.90454 * 3 2 1 5 5 H 1.48501 * 109.47416 * 331.90674 * 3 2 1 6 6 H 1.48497 * 109.47206 * 211.90107 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99797 * 18.77573 * 7 2 1 9 9 N 1.36936 * 120.00095 * 198.77459 * 7 2 1 10 10 C 1.43464 * 118.94018 * 209.18620 * 9 7 2 11 11 C 1.53791 * 107.96169 * 273.60980 * 10 9 7 12 12 C 1.47139 * 111.84067 * 281.66716 * 11 10 9 13 13 N 1.48213 * 110.34188 * 58.29712 * 12 11 10 14 14 C 1.34774 * 119.97016 * 102.46927 * 13 12 11 15 15 O 1.21282 * 120.00422 * 354.83681 * 14 13 12 16 16 C 1.50701 * 120.00060 * 174.83978 * 14 13 12 17 17 C 1.53004 * 109.47134 * 174.22914 * 16 14 13 18 18 C 1.53003 * 109.46794 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46872 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47233 * 179.97438 * 19 18 17 21 21 S 1.81400 * 109.47388 * 180.02562 * 20 19 18 22 22 N 1.65596 * 104.45314 * 180.02562 * 21 20 19 23 23 O 1.42100 * 110.54073 * 291.63200 * 21 20 19 24 24 O 1.42097 * 110.54114 * 68.37543 * 21 20 19 25 25 C 1.43626 * 120.06090 * 282.48952 * 13 12 11 26 26 C 1.48853 * 118.93667 * 28.91455 * 9 7 2 27 27 H 0.97005 * 119.99814 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.76305 * 33.22697 * 10 9 7 29 29 H 1.09000 * 109.76206 * 153.93876 * 10 9 7 30 30 H 1.09003 * 109.00487 * 42.27369 * 11 10 9 31 31 H 1.08997 * 109.00651 * 161.13588 * 11 10 9 32 32 H 1.08996 * 109.32520 * 178.56277 * 12 11 10 33 33 H 1.09002 * 109.32668 * 298.20464 * 12 11 10 34 34 H 1.09003 * 109.47010 * 294.22400 * 16 14 13 35 35 H 1.08996 * 109.47463 * 54.22551 * 16 14 13 36 36 H 1.09004 * 109.46809 * 299.99090 * 17 16 14 37 37 H 1.08996 * 109.47242 * 59.99501 * 17 16 14 38 38 H 1.08993 * 109.47320 * 299.99391 * 18 17 16 39 39 H 1.09004 * 109.46922 * 60.00055 * 18 17 16 40 40 H 1.09002 * 109.47779 * 300.00231 * 19 18 17 41 41 H 1.09001 * 109.47042 * 60.00172 * 19 18 17 42 42 H 1.08993 * 109.47447 * 300.00360 * 20 19 18 43 43 H 1.09001 * 109.46659 * 60.00314 * 20 19 18 44 44 H 0.97002 * 119.99650 * 0.02562 * 22 21 20 45 45 H 0.97002 * 120.00215 * 180.02562 * 22 21 20 46 46 H 1.09001 * 108.87118 * 211.44389 * 25 13 12 47 47 H 1.08997 * 108.87221 * 329.98723 * 25 13 12 48 48 H 1.08992 * 109.48348 * 260.62503 * 26 9 7 49 49 H 1.08997 * 109.48632 * 20.66575 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5380 2.0231 1.3994 5 1 1.4281 2.6640 -0.6593 6 1 3.5271 1.4522 -0.7399 7 6 2.0103 -1.2021 -0.0005 8 1 1.5134 -2.1124 -0.3020 9 7 3.3250 -1.2339 0.3811 10 6 4.1874 -2.2327 -0.1819 11 6 4.0631 -3.5040 0.6745 12 6 4.8384 -3.4023 1.9210 13 7 4.3866 -2.2351 2.7149 14 6 3.5855 -2.4170 3.7834 15 8 3.1585 -3.5228 4.0400 16 6 3.2202 -1.2463 4.6593 17 6 2.1961 -1.6918 5.7051 18 6 1.8258 -0.5034 6.5947 19 6 0.8012 -0.9487 7.6401 20 6 0.4313 0.2395 8.5302 21 16 -0.7829 -0.2886 9.7701 22 7 -1.0918 1.0772 10.6540 23 8 -2.0256 -0.5943 9.1524 24 8 -0.1883 -1.1823 10.7012 25 6 4.8015 -0.9103 2.3465 26 6 3.8147 -0.2272 1.3622 27 1 -0.4850 0.8401 0.0004 28 1 3.8832 -2.4472 -1.2064 29 1 5.2182 -1.8786 -0.1701 30 1 3.0136 -3.6645 0.9214 31 1 4.4268 -4.3559 0.1001 32 1 4.7012 -4.3115 2.5063 33 1 5.8949 -3.2843 1.6801 34 1 4.1139 -0.8752 5.1610 35 1 2.7921 -0.4534 4.0461 36 1 1.3024 -2.0629 5.2033 37 1 2.6243 -2.4848 6.3182 38 1 2.7195 -0.1327 7.0964 39 1 1.3977 0.2898 5.9817 40 1 -0.0926 -1.3193 7.1381 41 1 1.2289 -1.7421 8.2531 42 1 1.3251 0.6096 9.0321 43 1 0.0037 1.0331 7.9174 44 1 -0.6422 1.9084 10.4353 45 1 -1.7222 1.0460 11.3906 46 1 4.8791 -0.3018 3.2475 47 1 5.7820 -0.9666 1.8738 48 1 4.3235 0.5784 0.8330 49 1 2.9700 0.1795 1.9182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198433706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:56 Heat of formation + Delta-G solvation = -94.048248 kcal Electronic energy + Delta-G solvation = -29448.481976 eV Core-core repulsion = 25345.167815 eV Total energy + Delta-G solvation = -4103.314161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -39.91348 -37.35988 -37.24829 -36.26048 -36.11829 -34.36261 -33.54173 -33.22938 -32.16232 -31.40703 -28.20211 -27.51730 -25.90473 -23.58990 -23.45334 -21.94317 -21.08554 -19.96073 -19.70859 -18.52468 -17.90887 -17.58320 -17.13835 -16.61815 -16.32258 -16.02489 -15.83258 -15.60541 -15.30544 -14.83382 -14.44669 -14.00647 -13.74877 -13.71585 -13.31067 -13.19309 -12.82092 -12.59533 -12.47417 -12.42102 -12.34797 -12.25985 -12.19325 -12.00063 -11.77614 -11.60296 -11.51568 -11.22840 -11.13639 -11.00321 -10.79629 -10.69870 -10.56935 -10.41880 -10.40433 -10.12518 -10.00227 -9.58049 -9.34151 -8.65609 -8.18352 -6.94317 -5.97775 -3.37185 -0.07184 2.55145 3.02480 3.21195 3.32626 3.40177 3.42286 3.44463 3.97097 4.14403 4.46488 4.57099 4.69087 4.79838 4.87861 4.96550 5.07323 5.21743 5.29672 5.32994 5.39772 5.45897 5.49105 5.53795 5.59689 5.64296 5.72290 5.78323 5.80586 5.82232 5.88819 5.89777 6.05325 6.26108 6.28612 6.31565 6.41884 6.43954 6.49127 6.64010 6.69343 6.89963 7.11989 7.83362 7.99257 8.35148 8.60391 8.95399 9.69761 10.02828 11.18465 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.002556 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.327259 B =10953.990336 C =12255.957214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.886 3.114 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.262 4.262 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.590 5.590 14 C 0.521 3.479 15 O -0.550 6.550 16 C -0.141 4.141 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.617 4.617 21 S 2.612 3.388 22 N -1.254 6.254 23 O -0.961 6.961 24 O -0.965 6.965 25 C 0.095 3.905 26 C 0.102 3.898 27 H 0.262 0.738 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.411 0.589 45 H 0.419 0.581 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.036 0.964 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.957 4.442 17.337 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.200 1.200 7 C -0.390 4.390 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.008 3.992 13 N -0.322 5.322 14 C 0.310 3.690 15 O -0.428 6.428 16 C -0.180 4.180 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.747 4.747 21 S 2.704 3.296 22 N -0.927 5.927 23 O -0.950 6.950 24 O -0.955 6.955 25 C -0.032 4.032 26 C -0.024 4.024 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.237 0.763 45 H 0.248 0.752 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.224 2.896 17.502 19.154 hybrid contribution 0.699 2.151 -0.242 2.275 sum 7.923 5.047 17.260 19.651 Atomic orbital electron populations 1.69848 1.05748 1.26457 1.52938 1.25346 0.95183 0.97484 0.99393 0.86983 0.79436 0.84694 0.77197 1.21613 1.23259 1.19998 1.18906 0.84760 0.94449 1.40923 0.89970 1.43902 1.08115 1.34378 1.45837 1.20353 0.92822 0.87970 0.95310 1.21810 1.02258 1.00194 0.96721 1.20563 0.96996 0.88766 0.92827 1.47371 1.49732 1.07121 1.27963 1.20531 0.77273 0.90262 0.80921 1.90639 1.52611 1.26661 1.72863 1.21699 1.00622 0.97919 0.97805 1.21359 0.99467 0.97315 0.96337 1.21558 0.98133 0.98805 0.96483 1.21357 1.01860 0.94572 0.97478 1.30394 1.17693 1.10279 1.16372 1.04813 0.75892 0.73380 0.75501 1.53183 1.60371 1.28563 1.50564 1.93634 1.41068 1.82470 1.77867 1.93612 1.79166 1.62380 1.60294 1.21844 0.98438 0.83850 0.99023 1.22694 0.96921 0.91954 0.90818 0.92802 0.92683 0.94669 0.90800 0.92398 0.90392 0.92176 0.89409 0.88658 0.90634 0.91088 0.91565 0.91076 0.89666 0.89996 0.84717 0.84461 0.76283 0.75197 0.91064 0.91398 0.94655 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.41 13.97 55.49 0.78 -26.64 16 2 C 0.02 0.70 5.20 -17.43 -0.09 0.61 16 3 Si 0.89 21.34 23.99 -169.99 -4.08 17.26 16 4 H -0.29 -6.46 6.57 56.52 0.37 -6.09 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.47 6.66 56.52 0.38 -6.09 16 7 C -0.26 -7.12 9.67 -15.06 -0.15 -7.27 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.60 -13.44 2.28 -171.79 -0.39 -13.83 16 10 C 0.16 3.07 5.63 -5.24 -0.03 3.04 16 11 C -0.17 -2.94 5.64 -29.13 -0.16 -3.10 16 12 C 0.13 2.04 5.67 -5.91 -0.03 2.01 16 13 N -0.59 -9.81 2.46 -176.43 -0.43 -10.24 16 14 C 0.52 9.22 7.65 -10.99 -0.08 9.13 16 15 O -0.55 -11.45 15.46 5.56 0.09 -11.37 16 16 C -0.14 -1.95 4.12 -27.88 -0.11 -2.07 16 17 C -0.11 -1.40 4.52 -26.73 -0.12 -1.52 16 18 C -0.11 -1.09 5.21 -26.73 -0.14 -1.23 16 19 C -0.11 -1.03 5.22 -26.73 -0.14 -1.16 16 20 C -0.62 -3.67 6.09 37.16 0.23 -3.44 16 21 S 2.61 20.99 5.97 -107.50 -0.64 20.35 16 22 N -1.25 -5.69 9.43 60.35 0.57 -5.12 16 23 O -0.96 -12.12 18.10 -57.54 -1.04 -13.16 16 24 O -0.97 -11.41 18.10 -57.54 -1.04 -12.45 16 25 C 0.09 1.42 4.98 -4.39 -0.02 1.40 16 26 C 0.10 2.00 4.49 -1.56 -0.01 2.00 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 29 H 0.03 0.58 7.59 -51.93 -0.39 0.18 16 30 H 0.07 1.60 7.91 -51.93 -0.41 1.18 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.27 7.19 -51.93 -0.37 0.90 16 33 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.09 0.94 7.82 -51.93 -0.41 0.54 16 35 H 0.10 1.41 7.13 -51.93 -0.37 1.04 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.14 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.41 0.63 8.83 -34.46 -0.30 0.33 16 45 H 0.42 1.64 8.96 -34.47 -0.31 1.33 16 46 H 0.07 0.87 6.49 -51.93 -0.34 0.54 16 47 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 48 H 0.04 0.70 5.80 -51.93 -0.30 0.39 16 49 H 0.07 1.54 5.04 -51.93 -0.26 1.28 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -39.63 390.31 -9.30 -48.93 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.12 Total: 2.00 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.87 Total: -1.61 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.52 Total: -55.83 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -2.00 Total: -36.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.08 Total: 17.26 kcal Atomic # 16 Polarization: 20.99 SS G_CDS: -0.64 Total: 20.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.63 -9.30 -48.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198433706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.120 kcal (2) G-P(sol) polarization free energy of solvation -39.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds