Wall clock time and date at job start Wed Apr 1 2020 04:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48507 * 109.46889 * 91.90454 * 3 2 1 5 5 H 1.48501 * 109.47416 * 331.90674 * 3 2 1 6 6 H 1.48497 * 109.47206 * 211.90107 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99797 * 18.77573 * 7 2 1 9 9 N 1.36936 * 120.00095 * 198.77459 * 7 2 1 10 10 C 1.43464 * 118.94018 * 209.18620 * 9 7 2 11 11 C 1.53791 * 107.96169 * 273.60980 * 10 9 7 12 12 C 1.47139 * 111.84067 * 281.66716 * 11 10 9 13 13 N 1.48213 * 110.34188 * 58.29712 * 12 11 10 14 14 C 1.34774 * 119.97016 * 102.46927 * 13 12 11 15 15 O 1.21282 * 120.00422 * 354.83681 * 14 13 12 16 16 C 1.50701 * 120.00060 * 174.83978 * 14 13 12 17 17 C 1.53004 * 109.47134 * 174.22914 * 16 14 13 18 18 C 1.53003 * 109.46794 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46872 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47233 * 179.97438 * 19 18 17 21 21 S 1.81400 * 109.47388 * 180.02562 * 20 19 18 22 22 N 1.65596 * 104.45314 * 180.02562 * 21 20 19 23 23 O 1.42100 * 110.54073 * 291.63200 * 21 20 19 24 24 O 1.42097 * 110.54114 * 68.37543 * 21 20 19 25 25 C 1.43626 * 120.06090 * 282.48952 * 13 12 11 26 26 C 1.48853 * 118.93667 * 28.91455 * 9 7 2 27 27 H 0.97005 * 119.99814 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.76305 * 33.22697 * 10 9 7 29 29 H 1.09000 * 109.76206 * 153.93876 * 10 9 7 30 30 H 1.09003 * 109.00487 * 42.27369 * 11 10 9 31 31 H 1.08997 * 109.00651 * 161.13588 * 11 10 9 32 32 H 1.08996 * 109.32520 * 178.56277 * 12 11 10 33 33 H 1.09002 * 109.32668 * 298.20464 * 12 11 10 34 34 H 1.09003 * 109.47010 * 294.22400 * 16 14 13 35 35 H 1.08996 * 109.47463 * 54.22551 * 16 14 13 36 36 H 1.09004 * 109.46809 * 299.99090 * 17 16 14 37 37 H 1.08996 * 109.47242 * 59.99501 * 17 16 14 38 38 H 1.08993 * 109.47320 * 299.99391 * 18 17 16 39 39 H 1.09004 * 109.46922 * 60.00055 * 18 17 16 40 40 H 1.09002 * 109.47779 * 300.00231 * 19 18 17 41 41 H 1.09001 * 109.47042 * 60.00172 * 19 18 17 42 42 H 1.08993 * 109.47447 * 300.00360 * 20 19 18 43 43 H 1.09001 * 109.46659 * 60.00314 * 20 19 18 44 44 H 0.97002 * 119.99650 * 0.02562 * 22 21 20 45 45 H 0.97002 * 120.00215 * 180.02562 * 22 21 20 46 46 H 1.09001 * 108.87118 * 211.44389 * 25 13 12 47 47 H 1.08997 * 108.87221 * 329.98723 * 25 13 12 48 48 H 1.08992 * 109.48348 * 260.62503 * 26 9 7 49 49 H 1.08997 * 109.48632 * 20.66575 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5380 2.0231 1.3994 5 1 1.4281 2.6640 -0.6593 6 1 3.5271 1.4522 -0.7399 7 6 2.0103 -1.2021 -0.0005 8 1 1.5134 -2.1124 -0.3020 9 7 3.3250 -1.2339 0.3811 10 6 4.1874 -2.2327 -0.1819 11 6 4.0631 -3.5040 0.6745 12 6 4.8384 -3.4023 1.9210 13 7 4.3866 -2.2351 2.7149 14 6 3.5855 -2.4170 3.7834 15 8 3.1585 -3.5228 4.0400 16 6 3.2202 -1.2463 4.6593 17 6 2.1961 -1.6918 5.7051 18 6 1.8258 -0.5034 6.5947 19 6 0.8012 -0.9487 7.6401 20 6 0.4313 0.2395 8.5302 21 16 -0.7829 -0.2886 9.7701 22 7 -1.0918 1.0772 10.6540 23 8 -2.0256 -0.5943 9.1524 24 8 -0.1883 -1.1823 10.7012 25 6 4.8015 -0.9103 2.3465 26 6 3.8147 -0.2272 1.3622 27 1 -0.4850 0.8401 0.0004 28 1 3.8832 -2.4472 -1.2064 29 1 5.2182 -1.8786 -0.1701 30 1 3.0136 -3.6645 0.9214 31 1 4.4268 -4.3559 0.1001 32 1 4.7012 -4.3115 2.5063 33 1 5.8949 -3.2843 1.6801 34 1 4.1139 -0.8752 5.1610 35 1 2.7921 -0.4534 4.0461 36 1 1.3024 -2.0629 5.2033 37 1 2.6243 -2.4848 6.3182 38 1 2.7195 -0.1327 7.0964 39 1 1.3977 0.2898 5.9817 40 1 -0.0926 -1.3193 7.1381 41 1 1.2289 -1.7421 8.2531 42 1 1.3251 0.6096 9.0321 43 1 0.0037 1.0331 7.9174 44 1 -0.6422 1.9084 10.4353 45 1 -1.7222 1.0460 11.3906 46 1 4.8791 -0.3018 3.2475 47 1 5.7820 -0.9666 1.8738 48 1 4.3235 0.5784 0.8330 49 1 2.9700 0.1795 1.9182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198433706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:55 Heat of formation + Delta-G solvation = -127.371809 kcal Electronic energy + Delta-G solvation = -29449.926994 eV Core-core repulsion = 25345.167815 eV Total energy + Delta-G solvation = -4104.759179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25273 -38.83417 -38.04165 -37.12250 -36.93589 -35.97133 -34.55388 -33.99811 -33.51495 -33.04775 -29.51563 -28.73222 -27.36253 -25.17633 -24.66159 -23.04342 -22.05831 -21.57535 -20.34022 -19.84427 -18.87255 -18.46059 -18.16045 -17.79646 -17.53928 -17.32296 -16.95771 -16.71296 -16.26924 -16.09741 -15.84483 -15.44818 -15.14098 -14.75681 -14.69975 -14.30537 -14.17196 -14.02329 -13.75383 -13.41613 -13.38065 -13.19254 -13.13370 -13.04436 -12.97712 -12.93024 -12.61679 -12.59319 -12.26235 -12.09560 -12.05594 -11.91044 -11.75000 -11.58147 -11.50953 -11.47470 -11.40262 -11.24377 -10.75493 -10.63879 -9.55093 -8.80476 -8.13290 -5.49705 -0.69478 1.31045 1.45630 1.54697 1.69148 2.01329 2.21143 2.44715 2.72989 3.08257 3.40790 3.45403 3.49319 3.72763 3.86296 3.89869 4.07140 4.12300 4.13966 4.20100 4.34088 4.37168 4.47413 4.50504 4.57857 4.61993 4.68043 4.70229 4.79035 4.86392 4.88475 4.91564 4.93251 4.97936 5.04786 5.09594 5.21738 5.30834 5.33696 5.42928 5.47688 5.76960 5.91744 6.16324 6.39783 6.55848 7.01755 7.28547 7.70996 8.01502 9.07670 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.002556 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.327259 B =10953.990336 C =12255.957214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.040 4.040 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.319 1.319 6 H -0.258 1.258 7 C -0.252 4.252 8 H 0.026 0.974 9 N -0.612 5.612 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.127 3.873 13 N -0.593 5.593 14 C 0.506 3.494 15 O -0.595 6.595 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.103 4.103 19 C -0.129 4.129 20 C -0.595 4.595 21 S 2.621 3.379 22 N -1.239 6.239 23 O -1.016 7.016 24 O -1.009 7.009 25 C 0.098 3.902 26 C 0.092 3.908 27 H 0.260 0.740 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.174 0.826 43 H 0.161 0.839 44 H 0.428 0.572 45 H 0.423 0.577 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.051 0.949 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 7.638 18.726 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.234 4.234 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.249 1.249 6 H -0.183 1.183 7 C -0.382 4.382 8 H 0.044 0.956 9 N -0.335 5.335 10 C 0.032 3.968 11 C -0.197 4.197 12 C 0.006 3.994 13 N -0.324 5.324 14 C 0.296 3.704 15 O -0.477 6.477 16 C -0.174 4.174 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.168 4.168 20 C -0.728 4.728 21 S 2.717 3.283 22 N -0.916 5.916 23 O -1.006 7.006 24 O -0.998 6.998 25 C -0.027 4.027 26 C -0.033 4.033 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.192 0.808 43 H 0.179 0.821 44 H 0.258 0.742 45 H 0.254 0.746 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.069 0.931 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.916 6.094 18.922 23.177 hybrid contribution -0.750 1.022 -0.750 1.473 sum 11.166 7.116 18.172 22.484 Atomic orbital electron populations 1.70035 1.08055 1.27272 1.55816 1.26105 0.95831 1.01701 0.99745 0.85778 0.77890 0.78538 0.78928 1.17978 1.24887 1.18261 1.18703 0.87065 0.92557 1.39920 0.95573 1.44012 1.06581 1.35738 1.47208 1.20526 0.94221 0.87581 0.94472 1.21657 0.99085 1.00779 0.98145 1.20657 0.98978 0.88529 0.91270 1.47574 1.49159 1.08155 1.27477 1.21374 0.76676 0.90756 0.81608 1.90617 1.54183 1.28756 1.74134 1.21762 1.02447 0.95911 0.97313 1.21348 0.97716 0.98924 0.96603 1.21523 0.99587 0.97036 0.96027 1.21435 1.01194 0.96148 0.98013 1.30189 1.18125 1.09449 1.15009 1.04155 0.75277 0.73508 0.75391 1.52756 1.60492 1.28294 1.50084 1.93573 1.44298 1.83848 1.78837 1.93561 1.79605 1.64637 1.61971 1.21945 0.98117 0.82897 0.99785 1.22860 0.97380 0.91997 0.91032 0.93123 0.94332 0.90339 0.96719 0.89797 0.91630 0.87554 0.84835 0.89265 0.94764 0.91402 0.88116 0.90914 0.91673 0.89795 0.80799 0.82087 0.74232 0.74620 0.87170 0.87740 0.93107 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.29 13.97 21.65 0.30 -60.99 16 2 C -0.04 -2.30 5.20 84.86 0.44 -1.86 16 3 Si 0.96 43.65 23.99 68.60 1.65 45.30 16 4 H -0.25 -10.10 6.57 99.48 0.65 -9.45 16 5 H -0.32 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.26 -10.92 6.66 99.48 0.66 -10.26 16 7 C -0.25 -14.33 9.67 84.03 0.81 -13.51 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 N -0.61 -26.92 2.28 -697.42 -1.59 -28.51 16 10 C 0.16 5.70 5.63 87.21 0.49 6.19 16 11 C -0.16 -5.36 5.64 29.04 0.16 -5.19 16 12 C 0.13 3.68 5.67 84.23 0.48 4.16 16 13 N -0.59 -18.11 2.46 -830.48 -2.04 -20.15 16 14 C 0.51 17.40 7.65 87.66 0.67 18.07 16 15 O -0.60 -25.60 15.46 -3.03 -0.05 -25.64 16 16 C -0.13 -3.42 4.12 29.85 0.12 -3.30 16 17 C -0.11 -2.77 4.52 30.60 0.14 -2.64 16 18 C -0.10 -1.75 5.21 30.60 0.16 -1.59 16 19 C -0.13 -2.17 5.22 30.59 0.16 -2.01 16 20 C -0.60 -5.38 6.09 71.98 0.44 -4.94 16 21 S 2.62 40.81 5.97 -56.49 -0.34 40.47 16 22 N -1.24 -9.17 9.43 37.02 0.35 -8.82 16 23 O -1.02 -26.66 18.10 -127.65 -2.31 -28.97 16 24 O -1.01 -23.89 18.10 -127.65 -2.31 -26.21 16 25 C 0.10 2.42 4.98 87.67 0.44 2.86 16 26 C 0.09 3.29 4.49 86.69 0.39 3.68 16 27 H 0.26 15.62 8.31 -92.70 -0.77 14.84 16 28 H 0.04 1.49 8.02 -2.38 -0.02 1.47 16 29 H 0.08 2.20 7.59 -2.39 -0.02 2.18 16 30 H 0.01 0.65 7.91 -2.39 -0.02 0.63 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.07 2.09 7.19 -2.39 -0.02 2.07 16 33 H 0.11 2.17 8.05 -2.39 -0.02 2.15 16 34 H 0.13 2.15 7.82 -2.39 -0.02 2.13 16 35 H 0.09 2.42 7.13 -2.39 -0.02 2.40 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.43 0.09 8.83 -96.75 -0.85 -0.77 16 45 H 0.42 2.82 8.96 -96.74 -0.87 1.95 16 46 H 0.11 1.95 6.49 -2.39 -0.02 1.94 16 47 H 0.10 1.94 7.72 -2.39 -0.02 1.92 16 48 H 0.05 1.70 5.80 -2.39 -0.01 1.69 16 49 H 0.05 1.94 5.04 -2.39 -0.01 1.93 16 Total: -1.00 -96.11 390.31 -2.29 -98.40 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.86 Total: 15.20 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.90 Total: -0.08 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -2.98 Total: -118.47 kcal Atomic # 8 Polarization: -76.15 SS G_CDS: -4.67 Total: -80.82 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.65 Total: 45.30 kcal Atomic # 16 Polarization: 40.81 SS G_CDS: -0.34 Total: 40.47 kcal Total: -96.11 -2.29 -98.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198433706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.971 kcal (2) G-P(sol) polarization free energy of solvation -96.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds