Wall clock time and date at job start Wed Apr 1 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47256 * 2 1 4 4 C 1.52995 * 109.47256 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47072 * 180.02562 * 4 3 2 6 6 O 1.42101 * 110.54599 * 68.36832 * 5 4 3 7 7 O 1.42106 * 110.54141 * 291.62043 * 5 4 3 8 8 N 1.65605 * 104.44962 * 179.97438 * 5 4 3 9 9 C 1.46498 * 120.00062 * 64.99488 * 8 5 4 10 10 C 1.50698 * 109.46785 * 165.00172 * 9 8 5 11 11 O 1.21274 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63144 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.55709 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 N 1.46498 * 109.44278 * 181.23594 * 15 14 13 17 17 C 1.36936 * 119.99742 * 84.79956 * 16 15 14 18 18 H 1.07997 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47211 * 59.99616 * 21 19 17 23 23 H 1.48492 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47405 * 300.00055 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 26 26 C 1.46928 * 120.62874 * 0.02562 * 12 10 9 27 27 H 1.09003 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47550 * 300.00650 * 1 2 3 29 29 H 1.09004 * 109.46699 * 60.00376 * 1 2 3 30 30 H 1.09001 * 109.47573 * 240.00116 * 2 1 3 31 31 H 1.09001 * 109.47191 * 119.99583 * 2 1 3 32 32 H 1.09003 * 109.46936 * 59.99097 * 3 2 1 33 33 H 1.09001 * 109.46680 * 299.99895 * 3 2 1 34 34 H 1.08996 * 109.47238 * 59.99788 * 4 3 2 35 35 H 1.09004 * 109.46699 * 299.99624 * 4 3 2 36 36 H 0.96999 * 119.99709 * 244.99806 * 8 5 4 37 37 H 1.09001 * 109.47218 * 44.99997 * 9 8 5 38 38 H 1.08997 * 109.47186 * 285.00415 * 9 8 5 39 39 H 1.09002 * 109.58751 * 353.41659 * 13 12 10 40 40 H 1.08996 * 109.58750 * 113.69843 * 13 12 10 41 41 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 42 42 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 43 43 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 44 44 H 0.97004 * 120.00020 * 264.79513 * 16 15 14 45 45 H 0.97000 * 120.00375 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.49876 * 178.74890 * 25 15 14 47 47 H 1.09005 * 109.52615 * 58.67140 * 25 15 14 48 48 H 1.08998 * 109.58787 * 246.16207 * 26 12 10 49 49 H 1.09007 * 109.58600 * 6.44520 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1746 3.1528 0.0014 6 8 3.8779 3.7861 1.2384 7 8 3.8791 3.7867 -1.2356 8 7 5.8243 3.0079 0.0028 9 6 6.5080 2.4097 -1.1465 10 6 7.9806 2.7215 -1.0729 11 8 8.4160 3.3789 -0.1516 12 7 8.8136 2.2704 -2.0317 13 6 10.2515 2.5666 -1.9741 14 6 10.6799 3.2053 -3.2990 15 6 10.2692 2.2921 -4.4568 16 7 10.7036 2.8857 -5.7237 17 6 11.9784 2.6749 -6.1770 18 1 12.6638 2.0715 -5.6004 19 6 12.3902 3.2379 -7.3773 20 7 11.5552 3.9736 -8.0798 21 14 14.1295 2.9510 -7.9954 22 1 14.3532 1.4953 -8.1863 23 1 14.3171 3.6541 -9.2897 24 1 15.1007 3.4748 -7.0016 25 6 8.7479 2.1259 -4.4667 26 6 8.3008 1.4742 -3.1550 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8890 35 1 3.9328 0.9289 0.8909 36 1 6.3378 3.3190 0.7646 37 1 6.0955 2.8196 -2.0684 38 1 6.3642 1.3294 -1.1330 39 1 10.4497 3.2574 -1.1545 40 1 10.8088 1.6432 -1.8165 41 1 10.1917 4.1733 -3.4109 42 1 11.7616 3.3399 -3.3050 43 1 10.7402 1.3170 -4.3323 44 1 10.0881 3.4280 -6.2415 45 1 11.8427 4.3667 -8.9187 46 1 8.4565 1.4934 -5.3052 47 1 8.2753 3.1031 -4.5667 48 1 8.6987 0.4611 -3.0965 49 1 7.2120 1.4421 -3.1132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203518054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:49 Heat of formation + Delta-G solvation = -138.002561 kcal Electronic energy + Delta-G solvation = -28700.448660 eV Core-core repulsion = 24595.228497 eV Total energy + Delta-G solvation = -4105.220163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.28160 -38.85149 -38.21115 -37.07787 -36.63828 -36.17516 -35.77252 -33.83274 -32.15840 -31.37110 -31.10456 -28.25899 -26.39407 -25.26028 -24.23666 -24.05170 -22.17536 -21.73745 -20.48123 -20.20073 -19.19945 -18.84662 -17.84806 -17.73980 -17.26503 -16.83486 -16.71425 -16.60509 -16.23840 -15.57668 -15.45701 -15.34833 -15.07271 -14.90188 -14.69573 -14.36372 -14.19509 -13.96437 -13.77352 -13.62872 -13.34888 -13.26913 -13.23138 -13.12429 -12.99729 -12.79867 -12.63751 -12.61731 -12.43311 -12.22888 -12.13831 -12.13431 -11.91516 -11.66904 -11.50119 -11.45087 -11.41200 -10.95547 -10.86119 -10.50486 -9.69284 -8.99291 -7.92706 -5.20830 -0.77731 1.48051 1.50297 1.50430 1.56342 1.60690 2.04274 2.57340 2.80892 3.21602 3.33685 3.40627 3.58453 3.84595 3.85603 3.90052 4.07172 4.14007 4.18022 4.20882 4.31927 4.33620 4.37611 4.45435 4.52026 4.60903 4.63133 4.66525 4.76425 4.84021 4.86027 4.90302 4.94513 5.00649 5.01876 5.15005 5.25190 5.33255 5.35863 5.47372 5.50836 5.56192 5.61611 5.89980 6.29418 6.39784 7.05648 7.35566 8.13077 8.34413 9.30518 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.001969 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.140963 B =14217.706234 C =14839.813288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.129 4.129 4 C -0.599 4.599 5 S 2.611 3.389 6 O -0.997 6.997 7 O -0.994 6.994 8 N -1.114 6.114 9 C 0.089 3.911 10 C 0.508 3.492 11 O -0.580 6.580 12 N -0.603 5.603 13 C 0.122 3.878 14 C -0.140 4.140 15 C 0.171 3.829 16 N -0.738 5.738 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.275 1.275 23 H -0.299 1.299 24 H -0.281 1.281 25 C -0.136 4.136 26 C 0.110 3.890 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.422 0.578 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.102 0.898 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.568 -14.266 18.384 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.733 4.733 5 S 2.709 3.291 6 O -0.988 6.988 7 O -0.984 6.984 8 N -0.875 5.875 9 C -0.040 4.040 10 C 0.296 3.704 11 O -0.460 6.460 12 N -0.336 5.336 13 C -0.001 4.001 14 C -0.181 4.181 15 C 0.063 3.937 16 N -0.377 5.377 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.799 3.201 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.208 1.208 25 C -0.175 4.175 26 C -0.012 4.012 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.259 0.741 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.071 0.929 48 H 0.120 0.880 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.691 -13.201 18.672 30.839 hybrid contribution 1.523 0.482 -0.628 1.716 sum -19.169 -12.719 18.044 29.237 Atomic orbital electron populations 1.21866 0.95722 1.02387 1.02068 1.21494 0.95950 0.94285 1.03629 1.21554 0.90387 1.00940 1.03911 1.30414 1.06339 1.21431 1.15112 1.04831 0.72398 0.79110 0.72744 1.93560 1.83291 1.75453 1.46457 1.93571 1.83601 1.74545 1.46687 1.55327 1.25735 1.78652 1.27784 1.21500 0.89051 1.02557 0.90854 1.20979 0.89458 0.78523 0.81479 1.90668 1.78272 1.41173 1.35929 1.48216 1.08034 1.52898 1.24435 1.21505 0.80376 1.01081 0.97159 1.22477 1.00555 0.99378 0.95714 1.20476 0.94035 0.94689 0.84528 1.42672 1.12001 1.60831 1.22214 1.19590 0.90413 1.24530 1.02276 0.90464 1.25535 1.01730 1.01176 0.98589 1.69804 1.36485 1.39735 1.16121 0.85269 0.80271 0.77689 0.76879 1.20113 1.22580 1.20777 1.22124 0.95080 1.01548 0.98729 1.22080 1.01575 0.94945 0.82624 0.91810 0.92703 0.92615 0.90332 0.90662 0.90570 0.90207 0.81324 0.81943 0.74071 0.86200 0.83150 0.90818 0.89473 0.94647 0.92656 0.92809 0.79774 0.94204 0.89606 0.92925 0.88036 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.91 71.98 0.71 -0.35 16 2 C -0.11 -0.62 5.93 30.59 0.18 -0.43 16 3 C -0.13 -0.98 5.22 30.59 0.16 -0.82 16 4 C -0.60 -3.00 6.07 71.98 0.44 -2.57 16 5 S 2.61 41.66 5.46 -56.49 -0.31 41.35 16 6 O -1.00 -24.06 18.08 -127.65 -2.31 -26.37 16 7 O -0.99 -23.37 17.50 -127.65 -2.23 -25.61 16 8 N -1.11 -17.75 5.82 -190.80 -1.11 -18.86 16 9 C 0.09 1.17 4.96 85.63 0.42 1.59 16 10 C 0.51 11.39 7.77 87.66 0.68 12.07 16 11 O -0.58 -17.91 15.14 -3.01 -0.05 -17.95 16 12 N -0.60 -13.02 2.98 -819.01 -2.44 -15.46 16 13 C 0.12 3.21 6.43 86.36 0.56 3.77 16 14 C -0.14 -4.75 5.67 30.68 0.17 -4.58 16 15 C 0.17 5.98 2.73 45.03 0.12 6.10 16 16 N -0.74 -35.37 5.12 -322.76 -1.65 -37.03 16 17 C -0.24 -12.62 9.93 84.04 0.83 -11.79 16 18 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.08 -4.41 5.50 84.87 0.47 -3.94 16 20 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 21 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 C -0.14 -3.50 5.55 30.65 0.17 -3.33 16 26 C 0.11 1.72 6.34 86.34 0.55 2.27 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.17 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.42 7.98 7.66 -96.75 -0.74 7.23 16 37 H 0.12 1.43 7.25 -2.39 -0.02 1.41 16 38 H 0.15 0.27 7.94 -2.39 -0.02 0.25 16 39 H 0.07 2.15 7.00 -2.39 -0.02 2.13 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 44 H 0.37 19.44 7.80 -92.71 -0.72 18.72 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.12 0.92 5.93 -2.38 -0.01 0.91 16 Total: -1.00 -84.33 405.97 -2.83 -87.16 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.52 Total: 25.84 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.47 Total: -2.00 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -4.92 Total: -129.88 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -4.59 Total: -69.92 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 41.66 SS G_CDS: -0.31 Total: 41.35 kcal Total: -84.33 -2.83 -87.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203518054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.841 kcal (2) G-P(sol) polarization free energy of solvation -84.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds