Wall clock time and date at job start Wed Apr 1 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47466 * 2 1 4 4 C 1.52999 * 109.47302 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.47011 * 180.02562 * 4 3 2 6 6 O 1.42104 * 110.54374 * 68.37517 * 5 4 3 7 7 O 1.42097 * 110.54121 * 291.62149 * 5 4 3 8 8 N 1.65599 * 104.44696 * 179.97438 * 5 4 3 9 9 C 1.46503 * 120.00377 * 65.00359 * 8 5 4 10 10 C 1.50694 * 109.47567 * 164.99717 * 9 8 5 11 11 O 1.21275 * 119.99961 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64500 * 179.97438 * 12 10 9 14 14 C 1.54914 * 104.82992 * 204.16642 * 13 12 10 15 15 H 1.09004 * 111.00278 * 81.10732 * 14 13 12 16 16 C 1.53000 * 111.00205 * 204.91932 * 14 13 12 17 17 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 18 18 H 1.09000 * 110.69068 * 277.04987 * 17 14 13 19 19 N 1.46495 * 110.85076 * 153.69955 * 17 14 13 20 20 C 1.36934 * 119.99717 * 160.08604 * 19 17 14 21 21 H 1.08002 * 120.00471 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99836 * 180.02562 * 20 19 17 23 23 N 1.31613 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47550 * 89.99710 * 24 22 20 26 26 H 1.48503 * 109.46790 * 209.99816 * 24 22 20 27 27 H 1.48504 * 109.47100 * 329.99312 * 24 22 20 28 28 C 1.47018 * 125.64981 * 0.02817 * 12 10 9 29 29 H 1.09008 * 109.46471 * 300.00195 * 1 2 3 30 30 H 1.08997 * 109.47392 * 59.99234 * 1 2 3 31 31 H 1.08995 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47166 * 240.00081 * 2 1 3 33 33 H 1.08995 * 109.47438 * 119.99986 * 2 1 3 34 34 H 1.08997 * 109.46933 * 60.00452 * 3 2 1 35 35 H 1.09001 * 109.47211 * 300.00273 * 3 2 1 36 36 H 1.08997 * 109.47025 * 60.00181 * 4 3 2 37 37 H 1.09001 * 109.46943 * 300.00109 * 4 3 2 38 38 H 0.97006 * 120.00003 * 244.99415 * 8 5 4 39 39 H 1.08997 * 109.46815 * 44.99086 * 9 8 5 40 40 H 1.09007 * 109.46543 * 285.00026 * 9 8 5 41 41 H 1.08999 * 110.36956 * 323.01018 * 13 12 10 42 42 H 1.09001 * 110.36709 * 85.22211 * 13 12 10 43 43 H 1.08997 * 109.47294 * 58.54570 * 16 14 13 44 44 H 1.08997 * 109.47279 * 178.55250 * 16 14 13 45 45 H 1.09006 * 109.47100 * 298.55044 * 16 14 13 46 46 H 0.96997 * 120.00433 * 340.08762 * 19 17 14 47 47 H 0.97005 * 120.00291 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.88241 * 298.32048 * 28 12 10 49 49 H 1.09000 * 109.88049 * 59.33177 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 16 4.1747 3.1527 0.0001 6 8 3.8791 3.7856 1.2376 7 8 3.8782 3.7870 -1.2364 8 7 5.8244 3.0077 0.0001 9 6 6.5072 2.4100 -1.1501 10 6 7.9798 2.7216 -1.0777 11 8 8.4160 3.3787 -0.1565 12 7 8.8120 2.2701 -2.0369 13 6 10.2672 2.5005 -2.0900 14 6 10.6367 2.3592 -3.5878 15 1 10.4186 3.2779 -4.1323 16 6 12.1044 1.9611 -3.7553 17 6 9.6921 1.2099 -4.0374 18 1 10.1234 0.2392 -3.7932 19 7 9.4016 1.3042 -5.4701 20 6 8.9455 0.2064 -6.1498 21 1 8.8004 -0.7290 -5.6298 22 6 8.6707 0.2955 -7.5076 23 7 8.8480 1.4352 -8.1415 24 14 8.0479 -1.2018 -8.4347 25 1 6.5639 -1.2303 -8.3892 26 1 8.4986 -1.1317 -9.8479 27 1 8.5863 -2.4338 -7.8040 28 6 8.4189 1.4671 -3.2040 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9330 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 6.3386 3.3186 0.7615 39 1 6.0938 2.8202 -2.0714 40 1 6.3633 1.3295 -1.1367 41 1 10.5060 3.5023 -1.7331 42 1 10.7917 1.7520 -1.4959 43 1 12.2867 1.0190 -3.2384 44 1 12.3304 1.8438 -4.8151 45 1 12.7420 2.7371 -3.3317 46 1 9.5323 2.1441 -5.9373 47 1 8.6557 1.4976 -9.0902 48 1 7.9933 0.5190 -2.8754 49 1 7.6891 2.0138 -3.8012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216580019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:45 Heat of formation + Delta-G solvation = -134.131006 kcal Electronic energy + Delta-G solvation = -28908.392939 eV Core-core repulsion = 24803.340659 eV Total energy + Delta-G solvation = -4105.052280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21229 -39.09291 -38.23633 -37.11106 -36.67083 -35.90630 -35.70111 -33.94701 -32.46825 -31.40378 -29.23003 -28.90908 -26.47302 -25.75496 -25.28898 -23.00852 -22.21045 -21.36738 -20.63205 -20.36649 -19.03679 -18.96854 -17.88474 -17.66292 -17.44577 -17.16118 -16.71949 -16.51944 -16.29628 -15.75773 -15.35170 -15.15041 -14.91617 -14.74514 -14.48622 -14.30013 -14.19022 -14.03076 -13.80035 -13.55470 -13.44051 -13.27352 -13.17369 -13.13489 -12.96323 -12.82514 -12.79679 -12.67533 -12.46671 -12.17085 -12.16697 -12.13245 -11.99602 -11.64562 -11.53671 -11.48627 -11.39892 -11.13212 -10.88611 -10.56023 -9.67439 -9.01741 -7.89808 -5.19366 -0.80584 1.46532 1.54110 1.54149 1.55572 1.62547 2.01085 2.60816 2.76428 3.18835 3.27820 3.42498 3.54456 3.72258 3.82554 3.84194 3.91580 4.03815 4.15469 4.23634 4.26657 4.30148 4.42020 4.44864 4.51279 4.57753 4.59642 4.64776 4.71657 4.73781 4.90524 4.92038 4.94918 4.98700 5.12876 5.18618 5.21978 5.24421 5.29959 5.36182 5.44172 5.51266 5.61006 5.88773 6.30435 6.46197 6.99083 7.38583 8.11051 8.33801 9.33240 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.002917 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.904725 B = 9595.283544 C =12118.951348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.603 4.603 5 S 2.617 3.383 6 O -0.991 6.991 7 O -0.996 6.996 8 N -1.110 6.110 9 C 0.096 3.904 10 C 0.523 3.477 11 O -0.576 6.576 12 N -0.609 5.609 13 C 0.117 3.883 14 C -0.107 4.107 15 H 0.067 0.933 16 C -0.128 4.128 17 C 0.170 3.830 18 H 0.075 0.925 19 N -0.723 5.723 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.072 4.072 23 N -0.969 5.969 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.266 1.266 28 C 0.075 3.925 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.424 0.576 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.374 0.626 47 H 0.249 0.751 48 H 0.088 0.912 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -4.973 18.580 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.737 4.737 5 S 2.714 3.286 6 O -0.981 6.981 7 O -0.986 6.986 8 N -0.871 5.871 9 C -0.034 4.034 10 C 0.311 3.689 11 O -0.456 6.456 12 N -0.342 5.342 13 C -0.006 4.006 14 C -0.127 4.127 15 H 0.086 0.914 16 C -0.185 4.185 17 C 0.060 3.940 18 H 0.093 0.907 19 N -0.362 5.362 20 C -0.367 4.367 21 H 0.103 0.897 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.797 3.203 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.191 1.191 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.261 0.739 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.206 0.794 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.691 -4.000 18.901 21.184 hybrid contribution 0.097 -0.442 -0.938 1.042 sum -8.594 -4.442 17.962 20.402 Atomic orbital electron populations 1.21857 0.95464 1.02431 1.02155 1.21500 0.96175 0.94357 1.03469 1.21547 0.90184 1.00917 1.03988 1.30433 1.06583 1.21903 1.14746 1.04679 0.72309 0.78834 0.72754 1.93560 1.83242 1.75213 1.46100 1.93572 1.83593 1.74478 1.46912 1.55280 1.25772 1.78563 1.27535 1.21268 0.89544 1.01936 0.90627 1.20459 0.88817 0.78768 0.80892 1.90657 1.78233 1.41436 1.35276 1.48506 1.09017 1.52550 1.24087 1.22310 0.79865 1.02122 0.96255 1.22586 0.96958 0.98769 0.94346 0.91447 1.21558 0.93215 1.02001 1.01744 1.21496 0.91674 0.97485 0.83352 0.90705 1.42502 1.78412 1.11292 1.03989 1.19637 1.34301 0.91445 0.91355 0.89654 1.25501 1.03629 0.99298 0.98017 1.69810 1.56728 1.26213 1.09193 0.85240 0.77830 0.79822 0.77439 1.21580 1.23155 1.19070 1.23181 1.00714 0.95223 0.85886 0.92344 0.92723 0.91792 0.90909 0.90483 0.90028 0.90433 0.82255 0.81824 0.73864 0.87199 0.84439 0.91099 0.89502 0.91335 0.93533 0.91154 0.79387 0.94231 0.89350 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.12 5.93 30.59 0.18 -0.94 16 3 C -0.13 -1.49 5.22 30.60 0.16 -1.33 16 4 C -0.60 -6.04 6.07 71.98 0.44 -5.60 16 5 S 2.62 51.55 5.46 -56.49 -0.31 51.24 16 6 O -0.99 -25.97 18.08 -127.65 -2.31 -28.28 16 7 O -1.00 -27.85 17.50 -127.65 -2.23 -30.09 16 8 N -1.11 -22.16 5.82 -190.79 -1.11 -23.27 16 9 C 0.10 1.89 5.80 85.63 0.50 2.39 16 10 C 0.52 14.03 7.92 87.66 0.69 14.72 16 11 O -0.58 -18.83 15.98 -3.01 -0.05 -18.88 16 12 N -0.61 -16.06 3.33 -811.80 -2.70 -18.76 16 13 C 0.12 2.94 6.38 86.86 0.55 3.49 16 14 C -0.11 -2.97 3.26 -9.31 -0.03 -3.00 16 15 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 16 C -0.13 -3.10 9.30 71.98 0.67 -2.43 16 17 C 0.17 5.48 3.08 46.27 0.14 5.62 16 18 H 0.08 2.33 8.00 -2.39 -0.02 2.31 16 19 N -0.72 -31.60 5.18 -316.92 -1.64 -33.24 16 20 C -0.24 -11.48 9.98 84.03 0.84 -10.64 16 21 H 0.09 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.97 -55.92 13.06 21.65 0.28 -55.64 16 24 Si 0.97 42.70 29.55 68.60 2.03 44.72 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 C 0.08 2.09 6.23 86.73 0.54 2.63 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.42 9.11 7.67 -96.74 -0.74 8.37 16 39 H 0.11 2.28 7.70 -2.39 -0.02 2.26 16 40 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 42 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 43 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.37 18.30 7.72 -92.71 -0.72 17.58 16 47 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 48 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.06 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -74.59 413.15 -2.69 -77.28 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.52 Total: 34.21 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.86 Total: 0.69 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -5.17 Total: -130.90 kcal Atomic # 8 Polarization: -72.65 SS G_CDS: -4.59 Total: -77.24 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.31 Total: 51.24 kcal Total: -74.59 -2.69 -77.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216580019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.851 kcal (2) G-P(sol) polarization free energy of solvation -74.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds