Wall clock time and date at job start Wed Apr 1 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 C 1.53008 * 109.47030 * 180.02562 * 3 2 1 5 5 S 1.81404 * 109.46983 * 180.02562 * 4 3 2 6 6 O 1.42097 * 110.54566 * 68.37683 * 5 4 3 7 7 O 1.42095 * 110.53963 * 291.62143 * 5 4 3 8 8 N 1.65602 * 104.44653 * 180.02562 * 5 4 3 9 9 C 1.46497 * 120.00424 * 64.99497 * 8 5 4 10 10 C 1.50702 * 109.47201 * 164.99987 * 9 8 5 11 11 O 1.21283 * 119.99909 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99711 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99730 * 179.97438 * 12 10 9 14 14 C 1.53081 * 109.43848 * 84.79387 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.23616 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.45960 * 204.99782 * 13 12 10 27 27 H 1.09001 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46620 * 299.99535 * 1 2 3 29 29 H 1.08994 * 109.47054 * 60.00057 * 1 2 3 30 30 H 1.09007 * 109.47054 * 239.99959 * 2 1 3 31 31 H 1.09003 * 109.47452 * 120.00383 * 2 1 3 32 32 H 1.08998 * 109.47367 * 60.00306 * 3 2 1 33 33 H 1.08991 * 109.47606 * 299.99916 * 3 2 1 34 34 H 1.08998 * 109.46967 * 59.99852 * 4 3 2 35 35 H 1.09003 * 109.46863 * 299.99988 * 4 3 2 36 36 H 0.97008 * 119.99515 * 244.99966 * 8 5 4 37 37 H 1.09006 * 109.46878 * 45.00387 * 9 8 5 38 38 H 1.09000 * 109.47099 * 285.00297 * 9 8 5 39 39 H 0.96998 * 120.00063 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.46073 * 324.97324 * 13 12 10 41 41 H 1.08992 * 109.38800 * 61.36034 * 14 13 12 42 42 H 1.09002 * 109.61927 * 301.25313 * 14 13 12 43 43 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 44 44 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 45 45 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 47 47 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 48 48 H 1.09002 * 109.49848 * 58.67960 * 26 13 12 49 49 H 1.09002 * 109.52425 * 298.59433 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 16 4.1747 3.1527 0.0001 6 8 3.8792 3.7856 1.2376 7 8 3.8781 3.7869 -1.2364 8 7 5.8244 3.0077 -0.0014 9 6 6.5062 2.4102 -1.1521 10 6 7.9789 2.7218 -1.0809 11 8 8.4159 3.3788 -0.1598 12 7 8.8103 2.2713 -2.0413 13 6 10.2419 2.5748 -1.9724 14 6 10.9392 1.5424 -1.0828 15 6 12.4302 1.8807 -0.9880 16 7 12.9822 1.9824 -2.3458 17 6 14.0837 1.2536 -2.7076 18 1 14.2301 0.9727 -3.7401 19 6 15.0121 0.8758 -1.7472 20 7 15.8268 -0.1315 -1.9798 21 14 15.1050 1.7969 -0.1248 22 1 14.2495 1.1166 0.8804 23 1 16.5108 1.8164 0.3535 24 1 14.6288 3.1901 -0.3185 25 6 12.3304 2.8812 -3.3080 26 6 10.8409 2.5300 -3.3799 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 6.3392 3.3184 0.7599 37 1 6.0921 2.8207 -2.0731 38 1 6.3624 1.3298 -1.1390 39 1 8.4607 1.7462 -2.7782 40 1 10.3823 3.5695 -1.5494 41 1 10.8181 0.5500 -1.5169 42 1 10.4979 1.5604 -0.0862 43 1 12.9494 1.0940 -0.4405 44 1 12.5571 2.8313 -0.4699 45 1 16.4752 -0.3957 -1.3085 46 1 12.4467 3.9142 -2.9799 47 1 12.7851 2.7565 -4.2907 48 1 10.3276 3.2503 -4.0169 49 1 10.7228 1.5288 -3.7944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230137584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:11 Heat of formation + Delta-G solvation = -99.408643 kcal Electronic energy + Delta-G solvation = -28624.342576 eV Core-core repulsion = 24520.795971 eV Total energy + Delta-G solvation = -4103.546605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.09048 -37.85047 -37.47822 -36.43873 -36.25787 -35.16822 -34.62088 -32.28804 -31.05678 -30.49272 -30.36168 -27.47269 -24.92368 -24.78478 -22.92557 -22.06999 -21.88949 -20.61563 -19.86285 -19.69435 -18.33784 -17.42229 -16.87416 -16.83872 -16.37463 -16.33838 -15.99552 -15.50221 -15.21014 -14.65384 -14.54296 -14.24737 -14.00459 -13.84116 -13.73898 -13.53286 -13.41099 -13.01924 -12.92135 -12.55238 -12.48630 -12.38606 -12.32773 -12.28349 -12.15485 -11.99516 -11.85842 -11.84221 -11.25041 -11.15335 -10.98898 -10.89697 -10.66928 -10.27498 -10.19401 -10.09163 -9.98854 -9.76262 -9.54008 -8.95904 -8.65455 -7.03904 -5.98665 -3.35081 -0.20199 2.22031 2.43900 3.05117 3.31478 3.35324 3.48169 3.51431 3.73118 3.93678 4.20805 4.31261 4.36323 4.50539 4.59387 4.70281 4.81576 4.84802 4.90445 4.91345 5.03292 5.06837 5.17218 5.23230 5.24495 5.30081 5.36091 5.50490 5.58006 5.58625 5.72427 5.75047 5.96338 5.99435 6.08428 6.23308 6.33343 6.51049 6.56587 6.59635 6.61528 6.63164 6.85057 7.40911 7.91597 8.06754 8.28528 8.89377 9.68062 10.05007 11.17027 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.001943 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.092501 B =14408.790613 C =14561.754153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.631 4.631 5 S 2.615 3.385 6 O -0.952 6.952 7 O -0.954 6.954 8 N -1.108 6.108 9 C 0.094 3.906 10 C 0.509 3.491 11 O -0.531 6.531 12 N -0.720 5.720 13 C 0.150 3.850 14 C -0.140 4.140 15 C 0.128 3.872 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.151 3.849 26 C -0.140 4.140 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.429 0.571 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.406 0.257 0.958 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.760 4.760 5 S 2.707 3.293 6 O -0.943 6.943 7 O -0.944 6.944 8 N -0.871 5.871 9 C -0.037 4.037 10 C 0.293 3.707 11 O -0.407 6.407 12 N -0.370 5.370 13 C 0.046 3.954 14 C -0.181 4.181 15 C 0.002 3.998 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.024 3.976 26 C -0.180 4.180 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.267 0.733 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.467 1.401 1.504 29.539 hybrid contribution 0.429 -0.572 0.938 1.179 sum -29.038 0.830 2.443 29.153 Atomic orbital electron populations 1.21818 0.95340 1.02122 1.02225 1.21482 0.96207 0.95111 1.02743 1.21384 0.90005 1.00088 1.03852 1.30663 1.06966 1.26398 1.12021 1.04916 0.72731 0.77218 0.74439 1.93627 1.82779 1.72882 1.44968 1.93609 1.83216 1.71934 1.45645 1.55384 1.25845 1.78024 1.27847 1.21124 0.92392 0.99404 0.90739 1.20311 0.87858 0.79815 0.82710 1.90722 1.77327 1.38989 1.33673 1.46218 1.09044 1.55263 1.26519 1.21064 0.77271 0.99821 0.97233 1.22397 0.97867 0.98978 0.98843 1.21313 0.91336 0.99255 0.87909 1.44396 1.31647 1.48603 1.08323 1.18907 0.97433 1.26403 0.96259 0.89618 1.25279 0.96465 0.97699 0.98041 1.69835 1.23705 1.25880 1.35597 0.86975 0.75691 0.81659 0.84458 1.21626 1.23083 1.19500 1.20869 0.89463 0.92640 0.94589 1.22333 0.99036 1.02141 0.94511 0.92322 0.92431 0.92400 0.91424 0.91454 0.90189 0.90152 0.84838 0.84572 0.73303 0.87201 0.88741 0.76638 0.89754 0.91554 0.92351 0.90701 0.95482 0.92735 0.95686 0.91272 0.91995 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.50 5.93 -26.73 -0.16 -0.66 16 3 C -0.11 -0.56 5.22 -26.73 -0.14 -0.70 16 4 C -0.63 -2.73 6.07 37.16 0.23 -2.50 16 5 S 2.61 21.15 5.46 -107.50 -0.59 20.56 16 6 O -0.95 -11.16 18.08 -57.54 -1.04 -12.20 16 7 O -0.95 -10.54 17.49 -57.54 -1.01 -11.54 16 8 N -1.11 -9.34 5.82 -11.65 -0.07 -9.41 16 9 C 0.09 0.68 6.61 -5.19 -0.03 0.65 16 10 C 0.51 5.91 7.86 -10.98 -0.09 5.82 16 11 O -0.53 -8.43 15.39 5.56 0.09 -8.34 16 12 N -0.72 -7.84 5.08 -53.74 -0.27 -8.11 16 13 C 0.15 2.21 2.41 -67.87 -0.16 2.04 16 14 C -0.14 -2.44 5.66 -26.59 -0.15 -2.59 16 15 C 0.13 2.76 4.20 -3.71 -0.02 2.75 16 16 N -0.61 -13.86 2.77 -172.32 -0.48 -14.34 16 17 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 20 N -0.91 -27.42 13.97 55.49 0.78 -26.64 16 21 Si 0.88 22.37 24.34 -169.99 -4.14 18.23 16 22 H -0.29 -7.10 6.62 56.52 0.37 -6.73 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 25 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 26 C -0.14 -2.00 5.55 -26.61 -0.15 -2.15 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.43 4.16 7.67 -34.47 -0.26 3.90 16 37 H 0.11 0.63 7.69 -51.93 -0.40 0.23 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.40 2.98 8.60 -40.82 -0.35 2.63 16 40 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 44 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 46 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -37.61 399.52 -9.65 -47.27 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.37 Total: 0.04 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.57 Total: -1.53 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.04 Total: -58.51 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.96 Total: -32.08 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 16 Polarization: 21.15 SS G_CDS: -0.59 Total: 20.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.61 -9.65 -47.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230137584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.143 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds