Wall clock time and date at job start Wed Apr 1 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 C 1.53008 * 109.47030 * 180.02562 * 3 2 1 5 5 S 1.81404 * 109.46983 * 180.02562 * 4 3 2 6 6 O 1.42097 * 110.54566 * 68.37683 * 5 4 3 7 7 O 1.42095 * 110.53963 * 291.62143 * 5 4 3 8 8 N 1.65602 * 104.44653 * 180.02562 * 5 4 3 9 9 C 1.46497 * 120.00424 * 64.99497 * 8 5 4 10 10 C 1.50702 * 109.47201 * 164.99987 * 9 8 5 11 11 O 1.21283 * 119.99909 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99711 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99730 * 179.97438 * 12 10 9 14 14 C 1.53081 * 109.43848 * 84.79387 * 13 12 10 15 15 C 1.53190 * 109.29209 * 181.23616 * 14 13 12 16 16 N 1.46921 * 108.89311 * 305.57883 * 15 14 13 17 17 C 1.36940 * 120.63187 * 233.51481 * 16 15 14 18 18 H 1.08001 * 120.00319 * 152.61971 * 17 16 15 19 19 C 1.38813 * 119.99903 * 332.62203 * 17 16 15 20 20 N 1.31624 * 120.00070 * 159.34992 * 19 17 16 21 21 Si 1.86800 * 120.00077 * 339.35529 * 19 17 16 22 22 H 1.48494 * 109.47321 * 92.87851 * 21 19 17 23 23 H 1.48501 * 109.47194 * 212.88430 * 21 19 17 24 24 H 1.48509 * 109.46983 * 332.87654 * 21 19 17 25 25 C 1.46923 * 118.74178 * 53.54201 * 16 15 14 26 26 C 1.53035 * 109.45960 * 204.99782 * 13 12 10 27 27 H 1.09001 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46620 * 299.99535 * 1 2 3 29 29 H 1.08994 * 109.47054 * 60.00057 * 1 2 3 30 30 H 1.09007 * 109.47054 * 239.99959 * 2 1 3 31 31 H 1.09003 * 109.47452 * 120.00383 * 2 1 3 32 32 H 1.08998 * 109.47367 * 60.00306 * 3 2 1 33 33 H 1.08991 * 109.47606 * 299.99916 * 3 2 1 34 34 H 1.08998 * 109.46967 * 59.99852 * 4 3 2 35 35 H 1.09003 * 109.46863 * 299.99988 * 4 3 2 36 36 H 0.97008 * 119.99515 * 244.99966 * 8 5 4 37 37 H 1.09006 * 109.46878 * 45.00387 * 9 8 5 38 38 H 1.09000 * 109.47099 * 285.00297 * 9 8 5 39 39 H 0.96998 * 120.00063 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.46073 * 324.97324 * 13 12 10 41 41 H 1.08992 * 109.38800 * 61.36034 * 14 13 12 42 42 H 1.09002 * 109.61927 * 301.25313 * 14 13 12 43 43 H 1.08999 * 109.58729 * 185.71870 * 15 14 13 44 44 H 1.09004 * 109.58886 * 65.43758 * 15 14 13 45 45 H 0.97001 * 119.99914 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.59094 * 66.17180 * 25 16 15 47 47 H 1.09001 * 109.59077 * 186.46452 * 25 16 15 48 48 H 1.09002 * 109.49848 * 58.67960 * 26 13 12 49 49 H 1.09002 * 109.52425 * 298.59433 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 16 4.1747 3.1527 0.0001 6 8 3.8792 3.7856 1.2376 7 8 3.8781 3.7869 -1.2364 8 7 5.8244 3.0077 -0.0014 9 6 6.5062 2.4102 -1.1521 10 6 7.9789 2.7218 -1.0809 11 8 8.4159 3.3788 -0.1598 12 7 8.8103 2.2713 -2.0413 13 6 10.2419 2.5748 -1.9724 14 6 10.9392 1.5424 -1.0828 15 6 12.4302 1.8807 -0.9880 16 7 12.9822 1.9824 -2.3458 17 6 14.0837 1.2536 -2.7076 18 1 14.2301 0.9727 -3.7401 19 6 15.0121 0.8758 -1.7472 20 7 15.8268 -0.1315 -1.9798 21 14 15.1050 1.7969 -0.1248 22 1 14.2495 1.1166 0.8804 23 1 16.5108 1.8164 0.3535 24 1 14.6288 3.1901 -0.3185 25 6 12.3304 2.8812 -3.3080 26 6 10.8409 2.5300 -3.3799 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 6.3392 3.3184 0.7599 37 1 6.0921 2.8207 -2.0731 38 1 6.3624 1.3298 -1.1390 39 1 8.4607 1.7462 -2.7782 40 1 10.3823 3.5695 -1.5494 41 1 10.8181 0.5500 -1.5169 42 1 10.4979 1.5604 -0.0862 43 1 12.9494 1.0940 -0.4405 44 1 12.5571 2.8313 -0.4699 45 1 16.4752 -0.3957 -1.3085 46 1 12.4467 3.9142 -2.9799 47 1 12.7851 2.7565 -4.2907 48 1 10.3276 3.2503 -4.0169 49 1 10.7228 1.5288 -3.7944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230137584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:10 Heat of formation + Delta-G solvation = -130.675959 kcal Electronic energy + Delta-G solvation = -28625.698429 eV Core-core repulsion = 24520.795971 eV Total energy + Delta-G solvation = -4104.902458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.08731 -39.24331 -38.21673 -37.08432 -36.65573 -36.23576 -35.59994 -34.08134 -31.98022 -31.91978 -31.38612 -28.37884 -26.41716 -25.27226 -24.43477 -23.60231 -22.19434 -21.58878 -21.18553 -20.37843 -19.16108 -18.78338 -18.06186 -17.52059 -17.36040 -17.15741 -16.80114 -16.55833 -16.19099 -15.94346 -15.63301 -15.34080 -15.06496 -14.83267 -14.72007 -14.42900 -14.23444 -14.12751 -13.98793 -13.79675 -13.76531 -13.44447 -13.25076 -13.16606 -13.10034 -12.70321 -12.65558 -12.56532 -12.45147 -12.21839 -12.15482 -12.04560 -11.76305 -11.52540 -11.49539 -11.45906 -11.45398 -11.04252 -10.73832 -10.49896 -10.03913 -8.96649 -8.17784 -5.48643 -0.77775 1.27467 1.39328 1.47021 1.57968 1.61850 2.19864 2.39430 2.80815 3.04481 3.22134 3.32993 3.52537 3.62539 3.82731 3.85079 3.95073 4.05349 4.24500 4.25735 4.32277 4.32407 4.37659 4.47756 4.52993 4.61305 4.62828 4.68592 4.71678 4.75141 4.87943 4.92143 4.96614 5.00278 5.02994 5.10034 5.18062 5.23295 5.30853 5.43449 5.45187 5.51019 5.86784 5.90098 6.12710 6.58156 6.90553 7.24429 7.61323 8.02377 9.01767 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.001943 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.092501 B =14408.790613 C =14561.754153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.603 4.603 5 S 2.618 3.382 6 O -0.999 6.999 7 O -0.990 6.990 8 N -1.116 6.116 9 C 0.093 3.907 10 C 0.505 3.495 11 O -0.579 6.579 12 N -0.705 5.705 13 C 0.158 3.842 14 C -0.129 4.129 15 C 0.123 3.877 16 N -0.619 5.619 17 C -0.243 4.243 18 H 0.062 0.938 19 C -0.031 4.031 20 N -0.953 5.953 21 Si 0.937 3.063 22 H -0.280 1.280 23 H -0.310 1.310 24 H -0.268 1.268 25 C 0.141 3.859 26 C -0.125 4.125 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.422 0.578 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.421 0.579 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.215 -0.527 0.262 32.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.737 4.737 5 S 2.716 3.284 6 O -0.989 6.989 7 O -0.980 6.980 8 N -0.877 5.877 9 C -0.037 4.037 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.358 5.358 13 C 0.053 3.947 14 C -0.169 4.169 15 C -0.002 4.002 16 N -0.343 5.343 17 C -0.373 4.373 18 H 0.079 0.921 19 C -0.226 4.226 20 N -0.600 5.600 21 Si 0.767 3.233 22 H -0.207 1.207 23 H -0.239 1.239 24 H -0.192 1.192 25 C 0.016 3.984 26 C -0.164 4.164 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.186 0.814 35 H 0.175 0.825 36 H 0.259 0.741 37 H 0.147 0.853 38 H 0.162 0.838 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.115 0.885 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -32.329 0.671 0.768 32.345 hybrid contribution 1.212 -0.345 1.075 1.657 sum -31.117 0.326 1.843 31.173 Atomic orbital electron populations 1.21861 0.95603 1.02375 1.02142 1.21499 0.96056 0.94443 1.03488 1.21541 0.90358 1.00797 1.03978 1.30442 1.06400 1.21957 1.14853 1.04635 0.72308 0.78775 0.72728 1.93563 1.83355 1.75395 1.46599 1.93556 1.83599 1.74322 1.46553 1.55338 1.25777 1.78632 1.27953 1.21429 0.88753 1.02415 0.91065 1.21076 0.89592 0.78577 0.81636 1.90714 1.78490 1.41053 1.35582 1.45915 1.07218 1.55377 1.27271 1.20692 0.79455 0.97865 0.96695 1.22218 0.94937 0.99923 0.99824 1.21278 0.93974 0.98069 0.86903 1.44529 1.30976 1.49271 1.09564 1.18910 0.98196 1.25122 0.95052 0.92062 1.25816 0.96956 0.98668 1.01170 1.69942 1.25301 1.27810 1.36900 0.86065 0.75091 0.80556 0.81557 1.20671 1.23919 1.19244 1.21116 0.91931 0.91975 0.93360 1.22143 0.95924 1.03553 0.94777 0.91902 0.92735 0.92382 0.90364 0.90992 0.90635 0.89912 0.81420 0.82471 0.74141 0.85252 0.83785 0.74132 0.91656 0.91218 0.92168 0.93245 0.96007 0.93002 0.95230 0.91320 0.88509 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.91 71.98 0.71 -0.29 16 2 C -0.12 -0.62 5.93 30.59 0.18 -0.44 16 3 C -0.13 -0.90 5.22 30.59 0.16 -0.74 16 4 C -0.60 -2.87 6.07 71.98 0.44 -2.43 16 5 S 2.62 38.00 5.46 -56.49 -0.31 37.69 16 6 O -1.00 -23.34 18.08 -127.65 -2.31 -25.64 16 7 O -0.99 -20.49 17.49 -127.65 -2.23 -22.72 16 8 N -1.12 -16.37 5.82 -190.79 -1.11 -17.48 16 9 C 0.09 0.97 6.61 85.63 0.57 1.54 16 10 C 0.51 10.23 7.86 87.66 0.69 10.92 16 11 O -0.58 -17.62 15.39 -3.04 -0.05 -17.67 16 12 N -0.71 -12.74 5.08 -442.34 -2.25 -14.99 16 13 C 0.16 4.24 2.41 45.03 0.11 4.35 16 14 C -0.13 -4.23 5.66 30.68 0.17 -4.06 16 15 C 0.12 5.24 4.20 86.36 0.36 5.61 16 16 N -0.62 -27.94 2.77 -699.09 -1.94 -29.88 16 17 C -0.24 -13.36 10.03 84.03 0.84 -12.52 16 18 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 19 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 20 N -0.95 -59.12 13.97 21.65 0.30 -58.82 16 21 Si 0.94 47.17 24.34 68.60 1.67 48.84 16 22 H -0.28 -13.49 6.62 99.48 0.66 -12.83 16 23 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 24 H -0.27 -13.16 6.64 99.48 0.66 -12.50 16 25 C 0.14 4.95 6.52 86.37 0.56 5.51 16 26 C -0.12 -3.14 5.55 30.67 0.17 -2.97 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.17 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.42 7.81 7.67 -96.74 -0.74 7.07 16 37 H 0.13 0.92 7.69 -2.38 -0.02 0.90 16 38 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.42 4.18 8.60 -92.71 -0.80 3.38 16 40 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 2.34 4.50 -2.39 -0.01 2.33 16 44 H 0.02 0.95 7.07 -2.38 -0.02 0.94 16 45 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16 48 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -85.69 399.52 -3.49 -89.17 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -0.68 Total: 8.37 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.41 Total: 3.12 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -4.99 Total: -121.16 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -4.59 Total: -66.04 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.67 Total: 48.84 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.31 Total: 37.69 kcal Total: -85.69 -3.49 -89.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230137584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.502 kcal (2) G-P(sol) polarization free energy of solvation -85.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds