Wall clock time and date at job start Wed Apr 1 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46817 * 2 1 4 4 C 1.53000 * 109.47490 * 239.99948 * 2 1 3 5 5 N 1.46503 * 109.47051 * 119.99717 * 2 1 3 6 6 S 1.65591 * 119.99985 * 68.35905 * 5 2 1 7 7 O 1.42104 * 104.27805 * 311.18028 * 6 5 2 8 8 O 1.42097 * 104.28124 * 183.31891 * 6 5 2 9 9 C 1.81405 * 104.45171 * 67.24919 * 6 5 2 10 10 C 1.50700 * 109.47377 * 172.46760 * 9 6 5 11 11 O 1.21280 * 119.99833 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00082 * 180.02562 * 10 9 6 13 13 C 1.46496 * 120.00365 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47447 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47120 * 64.99662 * 14 13 12 16 16 N 1.46503 * 109.46896 * 304.99830 * 14 13 12 17 17 C 1.36931 * 119.99767 * 155.00131 * 16 14 13 18 18 H 1.08000 * 120.00056 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00104 * 179.97438 * 17 16 14 20 20 N 1.31612 * 119.99864 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00262 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46754 * 60.00208 * 21 19 17 23 23 H 1.48493 * 109.47279 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46818 * 300.00379 * 21 19 17 25 25 C 1.53000 * 109.46968 * 185.00023 * 14 13 12 26 26 C 1.52997 * 117.52130 * 116.28602 * 25 14 13 27 27 C 1.52994 * 60.00092 * 107.47605 * 26 25 14 28 28 H 1.09001 * 109.47164 * 290.29023 * 1 2 3 29 29 H 1.08996 * 109.46991 * 50.29299 * 1 2 3 30 30 H 1.09003 * 109.46555 * 170.29288 * 1 2 3 31 31 H 1.09004 * 109.46783 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46753 * 299.99641 * 3 2 1 33 33 H 1.08995 * 109.46912 * 59.99963 * 3 2 1 34 34 H 1.09001 * 109.46815 * 312.32564 * 4 2 1 35 35 H 1.08994 * 109.46980 * 72.32463 * 4 2 1 36 36 H 1.09001 * 109.47307 * 192.32626 * 4 2 1 37 37 H 0.97002 * 119.99884 * 248.35996 * 5 2 1 38 38 H 1.08994 * 109.47011 * 52.46387 * 9 6 5 39 39 H 1.08998 * 109.46847 * 292.46807 * 9 6 5 40 40 H 0.97007 * 119.99788 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47287 * 59.98929 * 13 12 10 42 42 H 1.08998 * 109.47043 * 299.99502 * 13 12 10 43 43 H 0.96999 * 120.00020 * 335.00021 * 16 14 13 44 44 H 0.97002 * 120.00471 * 179.97438 * 20 19 17 45 45 H 1.08999 * 115.55133 * 330.57689 * 25 14 13 46 46 H 1.08997 * 117.50141 * 214.97000 * 26 25 14 47 47 H 1.09002 * 117.49694 * 359.97438 * 26 25 14 48 48 H 1.08999 * 117.50145 * 252.50829 * 27 26 25 49 49 H 1.09000 * 117.49790 * 107.49275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 16 1.7957 -2.3234 1.3585 7 8 0.4208 -2.5212 1.0585 8 8 2.3145 -2.6215 2.6473 9 6 2.8403 -3.0533 0.0674 10 6 2.8675 -4.5512 0.2304 11 8 2.2441 -5.0748 1.1293 12 7 3.5856 -5.3088 -0.6221 13 6 3.6125 -6.7649 -0.4634 14 6 4.4935 -7.3805 -1.5525 15 1 5.5246 -7.0559 -1.4123 16 7 4.0191 -6.9450 -2.8684 17 6 4.8814 -6.9157 -3.9317 18 1 5.9112 -7.2131 -3.8002 19 6 4.4318 -6.5036 -5.1787 20 7 3.1769 -6.1406 -5.3389 21 14 5.6083 -6.4628 -6.6292 22 1 6.1409 -7.8274 -6.8728 23 1 4.8875 -5.9892 -7.8380 24 1 6.7317 -5.5390 -6.3294 25 6 4.4225 -8.9063 -1.4640 26 6 3.8206 -9.6562 -2.6540 27 6 5.3280 -9.7109 -2.3985 28 1 -0.3633 0.3564 0.9639 29 1 -0.3633 0.6565 -0.7906 30 1 -0.3632 -1.0130 -0.1733 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5088 -1.6659 -1.3657 35 1 1.8671 -0.0966 -2.1255 36 1 3.1078 -0.9152 -1.1463 37 1 2.4721 -0.1913 1.8932 38 1 3.8531 -2.6599 0.1540 39 1 2.4354 -2.8017 -0.9128 40 1 4.0845 -4.8899 -1.3409 41 1 2.5998 -7.1587 -0.5500 42 1 4.0174 -7.0161 0.5169 43 1 3.0942 -6.6775 -2.9864 44 1 2.8628 -5.8522 -6.2101 45 1 4.2391 -9.3114 -0.4688 46 1 3.2411 -10.5546 -2.4418 47 1 3.4746 -9.0625 -3.5001 48 1 5.9740 -9.1534 -3.0766 49 1 5.7404 -10.6455 -2.0182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266445759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:17 Heat of formation + Delta-G solvation = -65.945117 kcal Electronic energy + Delta-G solvation = -29862.830228 eV Core-core repulsion = 25760.734710 eV Total energy + Delta-G solvation = -4102.095518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.67088 -38.39816 -37.71163 -36.94104 -35.90300 -34.69382 -33.36989 -31.59010 -31.20503 -30.43822 -28.20240 -27.60531 -27.23222 -23.81250 -22.74997 -21.58415 -20.99121 -20.46624 -19.42445 -19.11010 -18.00109 -17.46060 -16.78469 -16.70568 -16.59222 -15.65998 -15.34872 -15.11401 -14.85512 -14.63793 -14.49532 -14.15403 -13.87312 -13.81433 -13.34551 -13.21983 -13.06518 -12.91120 -12.58925 -12.37846 -12.15617 -12.08056 -12.03407 -11.77190 -11.67912 -11.58130 -11.38535 -11.29371 -11.04214 -10.94390 -10.91057 -10.84153 -10.57006 -10.22596 -10.15900 -9.82676 -9.76757 -9.51160 -9.24197 -9.05919 -8.85632 -7.16124 -5.92088 -3.22957 0.11977 2.54517 2.62517 3.18605 3.32515 3.38512 3.39591 3.82413 4.12758 4.30669 4.41816 4.47474 4.52604 4.59454 4.66932 4.79999 4.96769 5.09732 5.20443 5.27041 5.30001 5.38522 5.38674 5.49596 5.56069 5.67478 5.68058 5.73045 5.76737 5.79405 5.89143 5.96444 5.99868 6.02984 6.26145 6.32324 6.34962 6.57065 6.63323 6.74386 6.75864 6.90132 7.26389 7.57405 7.58842 8.20606 8.25168 9.37350 9.90211 10.26798 11.29097 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.003089 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.607391 B = 9062.971918 C =10783.121384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.171 3.829 3 C -0.149 4.149 4 C -0.200 4.200 5 N -1.115 6.115 6 S 2.647 3.353 7 O -0.939 6.939 8 O -0.946 6.946 9 C -0.689 4.689 10 C 0.538 3.462 11 O -0.550 6.550 12 N -0.695 5.695 13 C 0.113 3.887 14 C 0.192 3.808 15 H 0.058 0.942 16 N -0.718 5.718 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.178 4.178 26 C -0.161 4.161 27 C -0.176 4.176 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.158 0.842 39 H 0.172 0.828 40 H 0.414 0.586 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 12.826 9.525 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 C -0.207 4.207 4 C -0.258 4.258 5 N -0.875 5.875 6 S 2.735 3.265 7 O -0.929 6.929 8 O -0.936 6.936 9 C -0.816 4.816 10 C 0.321 3.679 11 O -0.430 6.430 12 N -0.346 5.346 13 C -0.011 4.011 14 C 0.081 3.919 15 H 0.076 0.924 16 N -0.360 5.360 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.200 4.200 26 C -0.198 4.198 27 C -0.213 4.213 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.140 0.860 48 H 0.116 0.884 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.888 11.912 10.465 15.881 hybrid contribution 1.390 0.486 -1.696 2.246 sum 0.502 12.398 8.769 15.193 Atomic orbital electron populations 1.22587 0.93437 1.05030 1.02608 1.20192 0.94630 0.93490 0.83445 1.22058 1.01694 0.93943 1.03044 1.22977 1.02321 1.01945 0.98516 1.55997 1.74819 1.27021 1.29634 1.04053 0.75345 0.72339 0.74727 1.93571 1.29422 1.84550 1.85315 1.93579 1.81583 1.82985 1.35418 1.31740 1.20207 1.05059 1.24600 1.19103 0.79901 0.86425 0.82424 1.90824 1.44652 1.74167 1.33346 1.45841 1.48977 1.08021 1.31747 1.21755 1.01668 0.78472 0.99210 1.20006 0.96067 0.90019 0.85800 0.92386 1.42492 1.11592 1.78353 1.03580 1.19121 0.92503 1.37830 0.87921 0.91113 1.24708 0.96136 1.01860 0.97590 1.69642 1.14080 1.50321 1.23502 0.86343 0.79960 0.77803 0.82491 1.21199 1.21750 1.21344 1.23065 1.06361 0.96292 0.94299 1.22950 0.94858 1.00689 1.01349 1.22807 0.94479 1.00462 1.03545 0.91844 0.91589 0.89293 0.91744 0.90893 0.91777 0.91119 0.89365 0.90629 0.74900 0.82381 0.81046 0.74864 0.91078 0.91215 0.77892 0.93323 0.89492 0.91240 0.85984 0.88354 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.06 37.16 0.30 -1.32 16 2 C 0.17 1.34 1.14 -131.81 -0.15 1.19 16 3 C -0.15 -0.82 8.55 37.16 0.32 -0.50 16 4 C -0.20 -1.52 6.74 37.16 0.25 -1.26 16 5 N -1.11 -9.68 5.47 0.54 0.00 -9.68 16 6 S 2.65 34.66 4.39 -107.50 -0.47 34.19 16 7 O -0.94 -15.02 15.14 -57.54 -0.87 -15.89 16 8 O -0.95 -15.61 17.79 -60.98 -1.08 -16.69 16 9 C -0.69 -7.94 4.94 36.01 0.18 -7.77 16 10 C 0.54 8.66 7.85 -10.99 -0.09 8.58 16 11 O -0.55 -10.80 15.64 1.92 0.03 -10.77 16 12 N -0.70 -10.91 5.39 -60.30 -0.32 -11.24 16 13 C 0.11 1.86 5.19 -4.04 -0.02 1.84 16 14 C 0.19 3.38 2.83 -67.93 -0.19 3.19 16 15 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 16 N -0.72 -15.31 3.20 -53.42 -0.17 -15.48 16 17 C -0.24 -5.82 8.10 -15.06 -0.12 -5.94 16 18 H 0.07 1.68 6.90 -52.49 -0.36 1.32 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -25.32 13.06 55.49 0.72 -24.60 16 21 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.18 -3.02 5.73 -90.62 -0.52 -3.54 16 26 C -0.16 -2.97 9.69 -26.74 -0.26 -3.23 16 27 C -0.18 -3.03 9.88 -26.74 -0.26 -3.29 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.09 1.01 5.94 -51.93 -0.31 0.71 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.61 5.66 -51.93 -0.29 0.31 16 35 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.07 0.47 7.11 -51.93 -0.37 0.10 16 37 H 0.42 2.76 8.58 -34.46 -0.30 2.46 16 38 H 0.16 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.17 1.69 4.65 -51.93 -0.24 1.45 16 40 H 0.41 6.26 8.14 -40.82 -0.33 5.93 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.39 9.08 7.80 -40.82 -0.32 8.76 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.12 2.70 6.42 -51.93 -0.33 2.37 16 48 H 0.10 1.86 6.56 -51.93 -0.34 1.52 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.04 396.77 -9.69 -42.72 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -7.81 Total: 18.15 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.66 Total: -12.31 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.23 Total: -60.99 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.93 Total: -43.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 34.66 SS G_CDS: -0.47 Total: 34.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.04 -9.69 -42.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266445759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.223 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds