Wall clock time and date at job start Wed Apr 1 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00417 * 2 1 4 4 C 1.50702 * 109.47404 * 180.02562 * 3 2 1 5 5 C 1.37986 * 120.07197 * 0.29764 * 4 3 2 6 6 C 1.38340 * 120.14341 * 180.27828 * 5 4 3 7 7 C 1.38388 * 120.28932 * 359.69937 * 6 5 4 8 8 C 1.37929 * 120.14544 * 0.02562 * 7 6 5 9 9 C 1.39550 * 120.07458 * 180.02562 * 4 3 2 10 10 C 1.47846 * 120.14651 * 0.02562 * 9 4 3 11 11 O 1.21553 * 119.99824 * 359.72253 * 10 9 4 12 12 N 1.34777 * 120.00206 * 179.72818 * 10 9 4 13 13 C 1.46502 * 119.99942 * 180.02562 * 12 10 9 14 14 C 1.53513 * 114.16704 * 204.99849 * 13 12 10 15 15 N 1.47484 * 87.93060 * 220.32609 * 14 13 12 16 16 C 1.46895 * 110.99756 * 138.70311 * 15 14 13 17 17 C 1.50706 * 109.47182 * 170.00145 * 16 15 14 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46681 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47048 * 120.00010 * 24 22 20 27 27 H 1.48501 * 109.47100 * 240.00460 * 24 22 20 28 28 C 1.47477 * 87.83167 * 27.01125 * 15 14 13 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47056 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99733 * 1 2 3 32 32 H 1.09002 * 109.47105 * 60.00185 * 3 2 1 33 33 H 1.09002 * 109.47373 * 300.00267 * 3 2 1 34 34 H 1.07997 * 119.92655 * 0.02562 * 5 4 3 35 35 H 1.07992 * 119.85385 * 179.72626 * 6 5 4 36 36 H 1.08002 * 119.91969 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.07463 * 180.02562 * 8 7 6 38 38 H 0.96992 * 120.00120 * 359.97438 * 12 10 9 39 39 H 1.09003 * 113.37948 * 338.07305 * 13 12 10 40 40 H 1.09005 * 113.47855 * 105.56484 * 14 13 12 41 41 H 1.08997 * 113.53455 * 335.10065 * 14 13 12 42 42 H 1.09001 * 109.47613 * 50.00491 * 16 15 14 43 43 H 1.08998 * 109.47678 * 290.00386 * 16 15 14 44 44 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 45 45 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.48071 * 87.76093 * 28 15 14 47 47 H 1.09004 * 113.47566 * 218.21901 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1076 -0.0586 -0.0073 6 6 5.4865 -0.1697 -0.0021 7 6 6.2781 0.9654 0.0036 8 6 5.6960 2.2159 0.0046 9 6 4.3051 2.3350 -0.0002 10 6 3.6745 3.6722 0.0014 11 8 2.4631 3.7728 -0.0027 12 7 4.4427 4.7796 0.0074 13 6 3.8177 6.1046 0.0096 14 6 4.6996 7.2164 -0.5760 15 7 4.2158 8.0958 0.5046 16 6 5.3097 8.9106 1.0497 17 6 4.7432 9.9614 1.9696 18 8 3.5460 10.0248 2.1534 19 7 5.5674 10.8268 2.5927 20 6 5.0521 11.7823 3.4299 21 1 3.9857 11.8418 3.5898 22 6 5.9018 12.6742 4.0728 23 7 7.1995 12.6014 3.8786 24 14 5.1997 13.9766 5.2130 25 1 3.7211 13.8472 5.2611 26 1 5.7568 13.7926 6.5771 27 1 5.5629 15.3249 4.7075 28 6 4.0026 6.8846 1.3187 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.4954 -0.9483 -0.0125 35 1 5.9472 -1.1464 -0.0029 36 1 7.3541 0.8718 0.0072 37 1 6.3149 3.1010 0.0086 38 1 5.4093 4.6993 0.0110 39 1 2.7949 6.1011 -0.3673 40 1 4.3891 7.5388 -1.5699 41 1 5.7666 7.0022 -0.5166 42 1 5.8450 9.3938 0.2323 43 1 5.9959 8.2723 1.6062 44 1 6.5253 10.7731 2.4494 45 1 7.7927 13.2242 4.3270 46 1 4.8835 6.5810 1.8844 47 1 3.1015 6.9257 1.9306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267651940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:17 Heat of formation + Delta-G solvation = -41.210033 kcal Electronic energy + Delta-G solvation = -29194.256491 eV Core-core repulsion = 24957.789616 eV Total energy + Delta-G solvation = -4236.466876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.99023 -40.05662 -38.53133 -37.78998 -37.67382 -34.46163 -33.85275 -32.31170 -31.67474 -31.22230 -29.69379 -27.66781 -25.98165 -25.93941 -25.43641 -24.33884 -23.28584 -21.80033 -20.87322 -20.23317 -19.26179 -18.12270 -17.90535 -16.87377 -16.58191 -16.41302 -16.22820 -16.10886 -15.48204 -15.33388 -15.16542 -14.97218 -14.73181 -14.60230 -14.36103 -14.01687 -13.70534 -13.40172 -13.17536 -13.00485 -12.86533 -12.65287 -12.44883 -12.29768 -12.11208 -11.67475 -11.64786 -11.53244 -11.46266 -11.23607 -11.09169 -10.68551 -10.33970 -10.22057 -10.12790 -10.04608 -9.50931 -9.44413 -9.23969 -9.01542 -8.87399 -8.23095 -7.95922 -6.41677 -3.82207 0.46673 0.94957 2.56641 2.79876 3.16498 3.26990 3.34695 3.37319 3.45305 3.89720 3.99209 4.20596 4.33943 4.36407 4.42222 4.51518 4.64576 4.77161 4.94764 4.97609 5.02367 5.07355 5.14051 5.14480 5.28030 5.28311 5.29966 5.36095 5.37859 5.42740 5.55805 5.61021 5.62489 5.64969 5.81654 5.85313 6.01533 6.04000 6.06518 6.20580 6.28393 6.46730 6.47568 6.86942 7.07009 7.21325 7.55811 7.91003 8.06553 8.62306 9.18995 9.54656 10.07126 10.76308 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.001760 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.987624 B =15904.612252 C =16559.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.399 6.399 3 C 0.105 3.895 4 C -0.027 4.027 5 C -0.109 4.109 6 C -0.094 4.094 7 C -0.130 4.130 8 C -0.084 4.084 9 C -0.135 4.135 10 C 0.559 3.441 11 O -0.532 6.532 12 N -0.713 5.713 13 C 0.119 3.881 14 C -0.014 4.014 15 N -0.434 5.434 16 C 0.011 3.989 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.009 4.009 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.400 0.600 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -27.099 -10.758 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.319 6.319 3 C 0.029 3.971 4 C -0.028 4.028 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.148 4.148 8 C -0.102 4.102 9 C -0.138 4.138 10 C 0.347 3.653 11 O -0.410 6.410 12 N -0.364 5.364 13 C 0.014 3.986 14 C -0.144 4.144 15 N -0.156 5.156 16 C -0.121 4.121 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.139 4.139 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.235 0.765 39 H 0.149 0.851 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.017 -26.478 -10.659 28.614 hybrid contribution 1.658 0.508 0.757 1.893 sum -0.359 -25.970 -9.902 27.796 Atomic orbital electron populations 1.22708 0.80448 1.02571 1.00427 1.87741 1.20118 1.28326 1.95687 1.21447 0.88979 0.83800 1.02858 1.19786 0.94688 0.92392 0.95930 1.21041 0.94596 0.97529 0.99496 1.21423 0.93755 0.98940 0.97089 1.21133 1.00332 0.92172 1.01120 1.21239 0.93057 0.98263 0.97687 1.19698 0.93824 0.92578 1.07726 1.18298 0.86782 0.84151 0.76023 1.90767 1.13667 1.87095 1.49502 1.45884 1.09984 1.05567 1.74954 1.22737 0.99330 0.79123 0.97457 1.24325 0.98306 0.92594 0.99152 1.68798 1.31754 1.09990 1.05030 1.22504 0.93174 0.97226 0.99223 1.19640 0.87522 0.84818 0.84932 1.90539 1.15058 1.73945 1.66057 1.41868 1.08920 1.28890 1.40785 1.19753 0.94728 1.07906 1.20262 0.87883 1.25255 0.95119 0.98970 0.98698 1.69619 1.02293 1.38468 1.44130 0.85800 0.79287 0.79929 0.79348 1.19208 1.20794 1.20747 1.24410 1.03138 0.89734 0.96591 0.89640 0.93833 0.93887 0.90406 0.90473 0.84287 0.85398 0.85262 0.85434 0.76460 0.85058 0.88768 0.91118 0.89213 0.92230 0.77584 0.91977 0.91173 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.40 -4.01 9.18 -35.23 -0.32 -4.34 16 3 C 0.10 1.13 4.58 36.01 0.16 1.29 16 4 C -0.03 -0.28 5.91 -104.22 -0.62 -0.89 16 5 C -0.11 -0.94 9.37 -39.64 -0.37 -1.31 16 6 C -0.09 -0.64 10.04 -39.49 -0.40 -1.03 16 7 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 8 C -0.08 -0.61 9.54 -39.19 -0.37 -0.99 16 9 C -0.14 -1.32 5.87 -104.97 -0.62 -1.94 16 10 C 0.56 6.37 7.75 -12.33 -0.10 6.28 16 11 O -0.53 -7.60 13.00 5.32 0.07 -7.53 16 12 N -0.71 -6.81 5.34 -54.48 -0.29 -7.10 16 13 C 0.12 1.39 4.59 -67.72 -0.31 1.08 16 14 C -0.01 -0.16 7.45 -7.55 -0.06 -0.21 16 15 N -0.43 -7.05 5.82 -246.13 -1.43 -8.48 16 16 C 0.01 0.19 5.30 -4.98 -0.03 0.16 16 17 C 0.45 10.66 7.85 -10.98 -0.09 10.58 16 18 O -0.57 -16.04 16.01 5.54 0.09 -15.95 16 19 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 24 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.92 7.35 -51.93 -0.38 0.54 16 33 H 0.08 0.88 7.34 -51.93 -0.38 0.50 16 34 H 0.14 1.13 7.00 -52.49 -0.37 0.76 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.13 0.62 6.41 -52.48 -0.34 0.28 16 38 H 0.40 2.70 6.79 -40.82 -0.28 2.42 16 39 H 0.13 1.75 7.45 -51.93 -0.39 1.36 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 43 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 46 H 0.07 0.92 7.42 -51.93 -0.39 0.53 16 47 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -34.80 393.79 -9.20 -44.00 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.52 Total: 10.71 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.37 Total: 4.95 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -1.06 Total: -53.94 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.17 Total: -27.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.80 -9.20 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267651940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.787 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds