Wall clock time and date at job start Wed Apr 1 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00417 * 2 1 4 4 C 1.50702 * 109.47404 * 180.02562 * 3 2 1 5 5 C 1.37986 * 120.07197 * 0.29764 * 4 3 2 6 6 C 1.38340 * 120.14341 * 180.27828 * 5 4 3 7 7 C 1.38388 * 120.28932 * 359.69937 * 6 5 4 8 8 C 1.37929 * 120.14544 * 0.02562 * 7 6 5 9 9 C 1.39550 * 120.07458 * 180.02562 * 4 3 2 10 10 C 1.47846 * 120.14651 * 0.02562 * 9 4 3 11 11 O 1.21553 * 119.99824 * 359.72253 * 10 9 4 12 12 N 1.34777 * 120.00206 * 179.72818 * 10 9 4 13 13 C 1.46502 * 119.99942 * 180.02562 * 12 10 9 14 14 C 1.53513 * 114.16704 * 204.99849 * 13 12 10 15 15 N 1.47484 * 87.93060 * 220.32609 * 14 13 12 16 16 C 1.46895 * 110.99756 * 138.70311 * 15 14 13 17 17 C 1.50706 * 109.47182 * 170.00145 * 16 15 14 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46681 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47048 * 120.00010 * 24 22 20 27 27 H 1.48501 * 109.47100 * 240.00460 * 24 22 20 28 28 C 1.47477 * 87.83167 * 27.01125 * 15 14 13 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47056 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99733 * 1 2 3 32 32 H 1.09002 * 109.47105 * 60.00185 * 3 2 1 33 33 H 1.09002 * 109.47373 * 300.00267 * 3 2 1 34 34 H 1.07997 * 119.92655 * 0.02562 * 5 4 3 35 35 H 1.07992 * 119.85385 * 179.72626 * 6 5 4 36 36 H 1.08002 * 119.91969 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.07463 * 180.02562 * 8 7 6 38 38 H 0.96992 * 120.00120 * 359.97438 * 12 10 9 39 39 H 1.09003 * 113.37948 * 338.07305 * 13 12 10 40 40 H 1.09005 * 113.47855 * 105.56484 * 14 13 12 41 41 H 1.08997 * 113.53455 * 335.10065 * 14 13 12 42 42 H 1.09001 * 109.47613 * 50.00491 * 16 15 14 43 43 H 1.08998 * 109.47678 * 290.00386 * 16 15 14 44 44 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 45 45 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.48071 * 87.76093 * 28 15 14 47 47 H 1.09004 * 113.47566 * 218.21901 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1076 -0.0586 -0.0073 6 6 5.4865 -0.1697 -0.0021 7 6 6.2781 0.9654 0.0036 8 6 5.6960 2.2159 0.0046 9 6 4.3051 2.3350 -0.0002 10 6 3.6745 3.6722 0.0014 11 8 2.4631 3.7728 -0.0027 12 7 4.4427 4.7796 0.0074 13 6 3.8177 6.1046 0.0096 14 6 4.6996 7.2164 -0.5760 15 7 4.2158 8.0958 0.5046 16 6 5.3097 8.9106 1.0497 17 6 4.7432 9.9614 1.9696 18 8 3.5460 10.0248 2.1534 19 7 5.5674 10.8268 2.5927 20 6 5.0521 11.7823 3.4299 21 1 3.9857 11.8418 3.5898 22 6 5.9018 12.6742 4.0728 23 7 7.1995 12.6014 3.8786 24 14 5.1997 13.9766 5.2130 25 1 3.7211 13.8472 5.2611 26 1 5.7568 13.7926 6.5771 27 1 5.5629 15.3249 4.7075 28 6 4.0026 6.8846 1.3187 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.4954 -0.9483 -0.0125 35 1 5.9472 -1.1464 -0.0029 36 1 7.3541 0.8718 0.0072 37 1 6.3149 3.1010 0.0086 38 1 5.4093 4.6993 0.0110 39 1 2.7949 6.1011 -0.3673 40 1 4.3891 7.5388 -1.5699 41 1 5.7666 7.0022 -0.5166 42 1 5.8450 9.3938 0.2323 43 1 5.9959 8.2723 1.6062 44 1 6.5253 10.7731 2.4494 45 1 7.7927 13.2242 4.3270 46 1 4.8835 6.5810 1.8844 47 1 3.1015 6.9257 1.9306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267651940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:16 Heat of formation + Delta-G solvation = -68.883407 kcal Electronic energy + Delta-G solvation = -29195.456499 eV Core-core repulsion = 24957.789616 eV Total energy + Delta-G solvation = -4237.666883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.92008 -41.01812 -39.76350 -39.13815 -38.48363 -35.98245 -35.33422 -33.30619 -32.95164 -32.38105 -30.90431 -28.35040 -27.40810 -26.97923 -26.41789 -25.51413 -24.32150 -22.51748 -21.73361 -21.21838 -20.99060 -19.91537 -18.86491 -17.95150 -17.68481 -17.33737 -17.16527 -17.01358 -16.59447 -16.56078 -16.35879 -16.07064 -15.70506 -15.64632 -15.55977 -15.33395 -14.84870 -14.70274 -14.25143 -13.98671 -13.72724 -13.69707 -13.56680 -13.52214 -13.10537 -13.03075 -12.77718 -12.67249 -12.44244 -12.39566 -12.34143 -12.13189 -12.03912 -11.84839 -11.51457 -10.93146 -10.86726 -10.40556 -10.25906 -10.01426 -9.91614 -9.79306 -9.68248 -8.47829 -5.96114 -0.18539 0.36932 1.35281 1.40529 1.54556 1.78956 1.93686 2.05567 2.28806 2.67264 2.81138 2.86991 3.18288 3.29413 3.51341 3.62247 3.74975 3.78419 3.96202 4.07501 4.15437 4.26323 4.26858 4.35523 4.38401 4.39008 4.46992 4.52635 4.54069 4.55105 4.60219 4.68018 4.77966 4.80366 4.82731 4.91176 5.02644 5.28667 5.31092 5.36048 5.40633 5.43309 5.51674 5.86168 5.92646 6.06112 6.13156 6.44516 6.60591 7.10540 7.13054 7.56356 8.13698 8.69742 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.001760 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.987624 B =15904.612252 C =16559.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.113 3.887 4 C -0.051 4.051 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.126 4.126 8 C -0.079 4.079 9 C -0.152 4.152 10 C 0.555 3.445 11 O -0.572 6.572 12 N -0.696 5.696 13 C 0.133 3.867 14 C 0.003 3.997 15 N -0.474 5.474 16 C 0.026 3.974 17 C 0.439 3.561 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.277 1.277 26 H -0.270 1.270 27 H -0.269 1.269 28 C -0.012 4.012 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.089 0.911 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -28.338 -11.404 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.037 3.963 4 C -0.053 4.053 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.155 4.155 10 C 0.345 3.655 11 O -0.452 6.452 12 N -0.348 5.348 13 C 0.027 3.973 14 C -0.126 4.126 15 N -0.197 5.197 16 C -0.106 4.106 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.092 0.908 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.195 1.195 27 H -0.194 1.194 28 C -0.143 4.143 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.256 0.744 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.231 -27.735 -11.323 29.983 hybrid contribution 0.657 0.808 0.946 1.407 sum 1.888 -26.928 -10.377 28.920 Atomic orbital electron populations 1.22906 0.79325 1.04071 1.00520 1.87725 1.21449 1.27902 1.95646 1.21222 0.90168 0.83743 1.01135 1.19884 0.94169 0.93553 0.97651 1.21134 0.95788 0.96733 1.00086 1.21794 0.92856 1.00670 0.95262 1.21554 1.01950 0.91397 0.99415 1.21582 0.91901 1.00021 0.96263 1.19656 0.95081 0.91193 1.09614 1.18679 0.86437 0.85160 0.75245 1.90754 1.15504 1.87663 1.51312 1.45649 1.10730 1.04205 1.74219 1.22324 0.98943 0.80295 0.95771 1.24346 1.00114 0.90201 0.97896 1.68716 1.32592 1.11428 1.06989 1.22387 0.93537 0.95913 0.98767 1.20890 0.86878 0.85073 0.84524 1.90505 1.17422 1.75289 1.67620 1.41925 1.09334 1.29036 1.40953 1.19659 0.93862 1.10158 1.22625 0.90757 1.25997 0.95447 1.00258 0.99474 1.69664 1.02885 1.39027 1.44395 0.84901 0.78026 0.77714 0.77871 1.20140 1.19483 1.19446 1.24448 1.02371 0.90053 0.97384 0.87414 0.93940 0.93648 0.92491 0.92060 0.84422 0.82629 0.82010 0.82643 0.74365 0.87260 0.87757 0.87380 0.86619 0.89247 0.76866 0.91275 0.89321 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -8.62 9.18 -148.98 -1.37 -9.98 16 3 C 0.11 2.65 4.58 71.24 0.33 2.97 16 4 C -0.05 -1.07 5.91 -19.61 -0.12 -1.18 16 5 C -0.12 -1.95 9.37 22.23 0.21 -1.74 16 6 C -0.09 -0.94 10.04 22.33 0.22 -0.71 16 7 C -0.13 -1.12 10.03 22.23 0.22 -0.90 16 8 C -0.08 -0.91 9.54 22.53 0.21 -0.69 16 9 C -0.15 -2.86 5.87 -20.09 -0.12 -2.98 16 10 C 0.56 12.66 7.75 86.79 0.67 13.33 16 11 O -0.57 -17.40 13.00 -3.88 -0.05 -17.45 16 12 N -0.70 -12.16 5.34 -444.57 -2.37 -14.54 16 13 C 0.13 3.02 4.59 45.44 0.21 3.23 16 14 C 0.00 0.07 7.45 83.57 0.62 0.69 16 15 N -0.47 -14.94 5.82 -932.63 -5.43 -20.37 16 16 C 0.03 0.84 5.30 85.56 0.45 1.29 16 17 C 0.44 21.22 7.85 87.66 0.69 21.91 16 18 O -0.62 -36.17 16.01 -3.08 -0.05 -36.22 16 19 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 24 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.01 -0.35 7.52 83.57 0.63 0.28 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 1.52 7.35 -2.39 -0.02 1.50 16 33 H 0.06 1.57 7.34 -2.39 -0.02 1.55 16 34 H 0.14 2.19 7.00 -2.91 -0.02 2.17 16 35 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 36 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.16 0.79 6.41 -2.91 -0.02 0.78 16 38 H 0.42 4.18 6.79 -92.71 -0.63 3.55 16 39 H 0.11 3.03 7.45 -2.39 -0.02 3.01 16 40 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.11 1.38 7.90 -2.39 -0.02 1.36 16 42 H 0.12 3.19 8.08 -2.39 -0.02 3.17 16 43 H 0.09 2.40 7.30 -2.39 -0.02 2.38 16 44 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 46 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16 47 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -80.20 393.79 -2.16 -82.35 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.34 Total: 32.40 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 6.77 Total: 18.60 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -9.14 Total: -115.09 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -1.47 Total: -63.66 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -80.20 -2.16 -82.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267651940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.470 kcal (2) G-P(sol) polarization free energy of solvation -80.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds