Wall clock time and date at job start Wed Apr 1 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47385 * 2 1 4 4 C 1.53007 * 109.47251 * 239.99770 * 2 1 3 5 5 N 1.46501 * 109.46851 * 120.00351 * 2 1 3 6 6 S 1.65600 * 120.00274 * 37.71722 * 5 2 1 7 7 O 1.42099 * 104.27670 * 304.09384 * 6 5 2 8 8 O 1.42101 * 104.27564 * 176.23307 * 6 5 2 9 9 C 1.81400 * 104.44661 * 60.16388 * 6 5 2 10 10 C 1.50700 * 109.46918 * 171.74273 * 9 6 5 11 11 O 1.21278 * 119.99903 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99964 * 179.97438 * 10 9 6 13 13 C 1.46504 * 119.99715 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47329 * 35.00024 * 13 12 10 15 15 C 1.53000 * 109.46646 * 155.00303 * 13 12 10 16 16 N 1.46495 * 109.47407 * 304.99609 * 15 13 12 17 17 C 1.36935 * 120.00071 * 179.72658 * 16 15 13 18 18 H 1.08000 * 120.00013 * 0.27542 * 17 16 15 19 19 C 1.38815 * 120.00012 * 180.27656 * 17 16 15 20 20 N 1.31618 * 120.00025 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99921 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 89.99759 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99986 * 21 19 17 24 24 H 1.48500 * 109.47086 * 330.00050 * 21 19 17 25 25 C 1.53004 * 109.46836 * 274.99935 * 13 12 10 26 26 C 1.53002 * 117.49477 * 128.74876 * 25 13 12 27 27 C 1.52995 * 117.49772 * 60.09585 * 25 13 12 28 28 H 1.08994 * 109.47608 * 300.00124 * 1 2 3 29 29 H 1.09000 * 109.47006 * 60.00226 * 1 2 3 30 30 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47480 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47520 * 299.99736 * 3 2 1 33 33 H 1.09001 * 109.47561 * 59.99875 * 3 2 1 34 34 H 1.08996 * 109.46872 * 296.00216 * 4 2 1 35 35 H 1.09000 * 109.46911 * 55.99881 * 4 2 1 36 36 H 1.08999 * 109.47326 * 176.00094 * 4 2 1 37 37 H 0.97003 * 119.99598 * 217.72434 * 5 2 1 38 38 H 1.08998 * 109.47056 * 51.74535 * 9 6 5 39 39 H 1.08998 * 109.47325 * 291.74244 * 9 6 5 40 40 H 0.96996 * 119.99788 * 0.02562 * 12 10 9 41 41 H 1.09005 * 109.46852 * 184.99757 * 15 13 12 42 42 H 1.08999 * 109.47139 * 65.00286 * 15 13 12 43 43 H 0.96999 * 119.99669 * 0.02562 * 16 15 13 44 44 H 0.97001 * 119.99631 * 180.02562 * 20 19 17 45 45 H 1.08993 * 115.55162 * 274.41617 * 25 13 12 46 46 H 1.09008 * 117.49757 * 0.02562 * 26 25 13 47 47 H 1.08998 * 117.49651 * 145.01898 * 26 25 13 48 48 H 1.09004 * 117.50149 * 214.97673 * 27 25 13 49 49 H 1.09004 * 117.50000 * 359.96581 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0182 -0.6907 1.1962 6 16 1.2247 -2.0299 1.7610 7 8 -0.1117 -1.5886 1.9572 8 8 2.0180 -2.4725 2.8537 9 6 1.3085 -3.2167 0.3916 10 6 0.7948 -4.5555 0.8551 11 8 0.4096 -4.6951 1.9966 12 7 0.7625 -5.5975 0.0008 13 6 0.2626 -6.8988 0.4512 14 1 -0.5489 -6.7496 1.1635 15 6 -0.2537 -7.6909 -0.7517 16 7 -1.2553 -6.8960 -1.4664 17 6 -1.8571 -7.4009 -2.5880 18 1 -1.5965 -8.3870 -2.9432 19 6 -2.8020 -6.6454 -3.2686 20 7 -3.3801 -7.1305 -4.3470 21 14 -3.2522 -4.9395 -2.6548 22 1 -2.3584 -3.9348 -3.2850 23 1 -4.6623 -4.6409 -3.0121 24 1 -3.0935 -4.8866 -1.1792 25 6 1.3960 -7.6752 1.1247 26 6 1.1255 -8.2572 2.5137 27 6 2.0481 -7.0459 2.3574 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7364 -1.7675 -1.2141 35 1 1.6193 -0.2506 -2.1378 36 1 3.1277 -0.6597 -1.2858 37 1 2.8064 -0.3634 1.6574 38 1 2.3424 -3.3186 0.0620 39 1 0.6965 -2.8597 -0.4367 40 1 1.0702 -5.4857 -0.9123 41 1 -0.7061 -8.6209 -0.4072 42 1 0.5763 -7.9169 -1.4212 43 1 -1.4891 -6.0102 -1.1476 44 1 -4.0401 -6.6023 -4.8227 45 1 2.0359 -8.2490 0.4545 46 1 0.1400 -8.0873 2.9473 47 1 1.5878 -9.2138 2.7572 48 1 3.1171 -7.2060 2.4984 49 1 1.6701 -6.0785 2.6883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269149860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:34 Heat of formation + Delta-G solvation = -63.018048 kcal Electronic energy + Delta-G solvation = -30512.889265 eV Core-core repulsion = 26410.920674 eV Total energy + Delta-G solvation = -4101.968591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.22424 -38.52022 -37.49637 -37.06874 -36.02665 -35.28940 -33.73505 -31.70153 -31.32405 -30.71166 -28.37617 -27.70002 -27.53337 -24.04127 -22.25909 -21.59322 -21.34317 -20.86994 -20.29688 -19.39380 -18.30538 -17.81331 -17.05916 -16.73306 -16.62612 -16.07880 -15.69459 -15.17346 -14.99781 -14.62132 -14.58695 -14.33278 -14.12617 -13.97808 -13.48371 -13.32901 -12.87832 -12.80202 -12.78681 -12.65828 -12.39593 -12.25590 -12.03006 -11.99963 -11.88962 -11.85351 -11.66626 -11.40778 -11.31861 -11.18890 -11.11532 -10.95892 -10.88885 -10.41231 -10.25784 -10.13887 -10.00509 -9.86458 -9.68693 -9.06008 -8.98862 -7.36479 -5.86302 -3.23388 -0.02736 2.31247 2.47335 2.91284 3.26820 3.35055 3.39000 3.64724 3.93277 3.99978 4.20610 4.38194 4.45431 4.49986 4.52188 4.64391 4.67802 4.80851 4.93563 5.03834 5.16094 5.16407 5.20056 5.24906 5.33673 5.41492 5.45350 5.51238 5.51900 5.66238 5.67333 5.74269 5.79517 5.80444 5.91766 6.03026 6.09068 6.18334 6.26865 6.40747 6.46243 6.63902 6.65099 7.34264 7.87947 7.98681 8.31997 9.09846 9.81971 10.00714 11.31688 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.004410 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.735695 B = 6347.844343 C = 8700.020582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.165 3.835 3 C -0.148 4.148 4 C -0.186 4.186 5 N -1.113 6.113 6 S 2.646 3.354 7 O -0.937 6.937 8 O -0.942 6.942 9 C -0.684 4.684 10 C 0.544 3.456 11 O -0.538 6.538 12 N -0.695 5.695 13 C 0.160 3.840 14 H 0.094 0.906 15 C 0.153 3.847 16 N -0.756 5.756 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.877 3.123 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.166 4.166 26 C -0.168 4.168 27 C -0.187 4.187 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.418 0.582 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.409 0.591 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.362 0.638 44 H 0.261 0.739 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 13.870 8.699 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.245 4.245 5 N -0.874 5.874 6 S 2.734 3.266 7 O -0.926 6.926 8 O -0.932 6.932 9 C -0.811 4.811 10 C 0.327 3.673 11 O -0.417 6.417 12 N -0.345 5.345 13 C 0.056 3.944 14 H 0.112 0.888 15 C 0.026 3.974 16 N -0.402 5.402 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.707 3.293 22 H -0.210 1.210 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.186 4.186 26 C -0.205 4.205 27 C -0.224 4.224 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.252 0.748 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.244 0.756 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.195 0.805 44 H 0.071 0.929 45 H 0.125 0.875 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.438 13.399 10.019 22.765 hybrid contribution 0.369 1.137 -0.905 1.499 sum 15.806 14.536 9.115 23.329 Atomic orbital electron populations 1.22629 0.92677 1.04293 1.04219 1.20293 0.94536 0.93670 0.83833 1.22032 1.01461 0.93939 1.03196 1.22703 1.02590 1.01386 0.97811 1.55919 1.45438 1.45243 1.40771 1.04137 0.74620 0.73548 0.74315 1.93641 1.36924 1.78585 1.83481 1.93582 1.70377 1.81516 1.47755 1.31460 1.12490 1.12123 1.25000 1.19058 0.78228 0.84255 0.85733 1.90778 1.48711 1.84042 1.18216 1.45912 1.63746 1.09952 1.14853 1.21045 0.94554 0.81126 0.97702 0.88848 1.20910 0.92231 0.93945 0.90363 1.42710 1.47884 1.17854 1.31796 1.19035 1.16913 1.01754 1.00124 0.89022 1.24654 0.98812 0.98015 0.97242 1.69693 1.30894 1.37681 1.19510 0.86667 0.78262 0.85875 0.78525 1.20983 1.21399 1.20183 1.22618 1.01286 1.03789 0.90910 1.22913 1.01499 0.97541 0.98565 1.23314 0.98190 0.99562 1.01369 0.89980 0.90662 0.91447 0.91873 0.90897 0.91574 0.91743 0.90430 0.91259 0.74761 0.81958 0.81893 0.75556 0.93478 0.94659 0.80499 0.92931 0.87467 0.88597 0.88922 0.89518 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 7.09 37.16 0.26 -1.43 16 2 C 0.16 1.21 1.16 -131.82 -0.15 1.06 16 3 C -0.15 -0.80 8.65 37.15 0.32 -0.48 16 4 C -0.19 -1.14 8.61 37.16 0.32 -0.82 16 5 N -1.11 -9.07 5.42 0.54 0.00 -9.06 16 6 S 2.65 32.88 4.25 -107.50 -0.46 32.43 16 7 O -0.94 -14.69 14.49 -57.54 -0.83 -15.53 16 8 O -0.94 -14.59 17.75 -61.34 -1.09 -15.68 16 9 C -0.68 -7.17 4.73 36.01 0.17 -7.00 16 10 C 0.54 7.99 7.18 -10.98 -0.08 7.91 16 11 O -0.54 -9.62 12.64 0.74 0.01 -9.61 16 12 N -0.70 -9.83 4.50 -53.80 -0.24 -10.07 16 13 C 0.16 2.48 2.43 -67.93 -0.17 2.31 16 14 H 0.09 1.63 7.33 -51.93 -0.38 1.25 16 15 C 0.15 2.74 5.80 -4.04 -0.02 2.71 16 16 N -0.76 -17.03 5.24 -59.91 -0.31 -17.34 16 17 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -28.52 13.97 55.49 0.78 -27.74 16 21 Si 0.88 21.60 27.74 -169.99 -4.71 16.89 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 25 C -0.17 -2.20 5.36 -90.62 -0.49 -2.69 16 26 C -0.17 -2.12 10.18 -26.70 -0.27 -2.39 16 27 C -0.19 -2.52 9.73 -26.70 -0.26 -2.78 16 28 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.73 5.23 -51.93 -0.27 0.46 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.39 4.22 -51.93 -0.22 0.17 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.42 2.55 8.67 -34.47 -0.30 2.26 16 38 H 0.16 1.05 7.93 -51.93 -0.41 0.64 16 39 H 0.16 1.41 5.79 -51.92 -0.30 1.11 16 40 H 0.41 5.05 8.60 -40.82 -0.35 4.70 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.36 8.13 5.20 -40.82 -0.21 7.92 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.11 1.29 8.11 -51.93 -0.42 0.86 16 46 H 0.10 1.27 8.05 -51.92 -0.42 0.85 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -36.85 393.25 -9.32 -46.17 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -7.76 Total: 13.98 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.62 Total: -10.35 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.22 Total: -64.22 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.91 Total: -40.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: 32.88 SS G_CDS: -0.46 Total: 32.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.85 -9.32 -46.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269149860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.851 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds