Wall clock time and date at job start Wed Apr 1 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47385 * 2 1 4 4 C 1.53007 * 109.47251 * 239.99770 * 2 1 3 5 5 N 1.46501 * 109.46851 * 120.00351 * 2 1 3 6 6 S 1.65600 * 120.00274 * 37.71722 * 5 2 1 7 7 O 1.42099 * 104.27670 * 304.09384 * 6 5 2 8 8 O 1.42101 * 104.27564 * 176.23307 * 6 5 2 9 9 C 1.81400 * 104.44661 * 60.16388 * 6 5 2 10 10 C 1.50700 * 109.46918 * 171.74273 * 9 6 5 11 11 O 1.21278 * 119.99903 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99964 * 179.97438 * 10 9 6 13 13 C 1.46504 * 119.99715 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47329 * 35.00024 * 13 12 10 15 15 C 1.53000 * 109.46646 * 155.00303 * 13 12 10 16 16 N 1.46495 * 109.47407 * 304.99609 * 15 13 12 17 17 C 1.36935 * 120.00071 * 179.72658 * 16 15 13 18 18 H 1.08000 * 120.00013 * 0.27542 * 17 16 15 19 19 C 1.38815 * 120.00012 * 180.27656 * 17 16 15 20 20 N 1.31618 * 120.00025 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99921 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 89.99759 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99986 * 21 19 17 24 24 H 1.48500 * 109.47086 * 330.00050 * 21 19 17 25 25 C 1.53004 * 109.46836 * 274.99935 * 13 12 10 26 26 C 1.53002 * 117.49477 * 128.74876 * 25 13 12 27 27 C 1.52995 * 117.49772 * 60.09585 * 25 13 12 28 28 H 1.08994 * 109.47608 * 300.00124 * 1 2 3 29 29 H 1.09000 * 109.47006 * 60.00226 * 1 2 3 30 30 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47480 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47520 * 299.99736 * 3 2 1 33 33 H 1.09001 * 109.47561 * 59.99875 * 3 2 1 34 34 H 1.08996 * 109.46872 * 296.00216 * 4 2 1 35 35 H 1.09000 * 109.46911 * 55.99881 * 4 2 1 36 36 H 1.08999 * 109.47326 * 176.00094 * 4 2 1 37 37 H 0.97003 * 119.99598 * 217.72434 * 5 2 1 38 38 H 1.08998 * 109.47056 * 51.74535 * 9 6 5 39 39 H 1.08998 * 109.47325 * 291.74244 * 9 6 5 40 40 H 0.96996 * 119.99788 * 0.02562 * 12 10 9 41 41 H 1.09005 * 109.46852 * 184.99757 * 15 13 12 42 42 H 1.08999 * 109.47139 * 65.00286 * 15 13 12 43 43 H 0.96999 * 119.99669 * 0.02562 * 16 15 13 44 44 H 0.97001 * 119.99631 * 180.02562 * 20 19 17 45 45 H 1.08993 * 115.55162 * 274.41617 * 25 13 12 46 46 H 1.09008 * 117.49757 * 0.02562 * 26 25 13 47 47 H 1.08998 * 117.49651 * 145.01898 * 26 25 13 48 48 H 1.09004 * 117.50149 * 214.97673 * 27 25 13 49 49 H 1.09004 * 117.50000 * 359.96581 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0182 -0.6907 1.1962 6 16 1.2247 -2.0299 1.7610 7 8 -0.1117 -1.5886 1.9572 8 8 2.0180 -2.4725 2.8537 9 6 1.3085 -3.2167 0.3916 10 6 0.7948 -4.5555 0.8551 11 8 0.4096 -4.6951 1.9966 12 7 0.7625 -5.5975 0.0008 13 6 0.2626 -6.8988 0.4512 14 1 -0.5489 -6.7496 1.1635 15 6 -0.2537 -7.6909 -0.7517 16 7 -1.2553 -6.8960 -1.4664 17 6 -1.8571 -7.4009 -2.5880 18 1 -1.5965 -8.3870 -2.9432 19 6 -2.8020 -6.6454 -3.2686 20 7 -3.3801 -7.1305 -4.3470 21 14 -3.2522 -4.9395 -2.6548 22 1 -2.3584 -3.9348 -3.2850 23 1 -4.6623 -4.6409 -3.0121 24 1 -3.0935 -4.8866 -1.1792 25 6 1.3960 -7.6752 1.1247 26 6 1.1255 -8.2572 2.5137 27 6 2.0481 -7.0459 2.3574 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7364 -1.7675 -1.2141 35 1 1.6193 -0.2506 -2.1378 36 1 3.1277 -0.6597 -1.2858 37 1 2.8064 -0.3634 1.6574 38 1 2.3424 -3.3186 0.0620 39 1 0.6965 -2.8597 -0.4367 40 1 1.0702 -5.4857 -0.9123 41 1 -0.7061 -8.6209 -0.4072 42 1 0.5763 -7.9169 -1.4212 43 1 -1.4891 -6.0102 -1.1476 44 1 -4.0401 -6.6023 -4.8227 45 1 2.0359 -8.2490 0.4545 46 1 0.1400 -8.0873 2.9473 47 1 1.5878 -9.2138 2.7572 48 1 3.1171 -7.2060 2.4984 49 1 1.6701 -6.0785 2.6883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269149860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:33 Heat of formation + Delta-G solvation = -92.699727 kcal Electronic energy + Delta-G solvation = -30514.176359 eV Core-core repulsion = 26410.920674 eV Total energy + Delta-G solvation = -4103.255685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.39882 -39.18893 -38.68887 -38.05139 -37.08572 -36.79714 -35.21564 -33.48361 -32.07605 -31.82536 -29.75346 -28.30252 -28.05026 -25.77344 -23.38767 -23.05957 -22.51752 -21.57631 -21.46121 -20.29799 -19.85408 -19.11544 -18.08708 -17.84347 -17.56062 -17.07197 -16.72878 -16.59628 -16.22530 -15.97277 -15.53003 -15.23906 -15.11610 -14.94134 -14.80706 -14.76430 -14.19186 -14.01572 -13.69949 -13.54904 -13.49171 -13.28160 -13.16208 -12.92752 -12.81554 -12.74334 -12.61939 -12.54318 -12.47076 -12.41713 -12.29349 -12.16301 -11.98428 -11.86052 -11.64868 -11.46067 -11.20953 -11.06374 -11.00851 -10.57586 -10.21185 -9.35235 -8.05014 -5.39016 -0.96282 1.21402 1.31653 1.38535 1.43133 1.59881 1.90105 2.44073 2.70071 2.92295 3.12205 3.26447 3.33632 3.39652 3.65590 3.79426 3.82255 3.91910 3.99865 4.04293 4.07039 4.10553 4.20765 4.32964 4.35919 4.55327 4.64784 4.78087 4.81014 4.84589 4.87831 4.91511 5.02206 5.02277 5.03462 5.21680 5.24295 5.26593 5.30411 5.41351 5.42372 5.44069 5.74259 6.09644 6.18094 6.22816 6.90374 7.04022 7.78464 7.96695 9.16162 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.004410 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.735695 B = 6347.844343 C = 8700.020582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 C -0.147 4.147 4 C -0.191 4.191 5 N -1.097 6.097 6 S 2.648 3.352 7 O -0.979 6.979 8 O -0.982 6.982 9 C -0.673 4.673 10 C 0.534 3.466 11 O -0.575 6.575 12 N -0.691 5.691 13 C 0.168 3.832 14 H 0.069 0.931 15 C 0.154 3.846 16 N -0.758 5.758 17 C -0.232 4.232 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.938 3.062 22 H -0.260 1.260 23 H -0.298 1.298 24 H -0.269 1.269 25 C -0.162 4.162 26 C -0.166 4.166 27 C -0.189 4.189 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.428 0.572 38 H 0.208 0.792 39 H 0.187 0.813 40 H 0.419 0.581 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.364 0.636 44 H 0.258 0.742 45 H 0.128 0.872 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.841 15.129 8.154 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.075 3.925 3 C -0.206 4.206 4 C -0.249 4.249 5 N -0.861 5.861 6 S 2.739 3.261 7 O -0.969 6.969 8 O -0.972 6.972 9 C -0.802 4.802 10 C 0.319 3.681 11 O -0.457 6.457 12 N -0.341 5.341 13 C 0.063 3.937 14 H 0.087 0.913 15 C 0.028 3.972 16 N -0.404 5.404 17 C -0.363 4.363 18 H 0.083 0.917 19 C -0.246 4.246 20 N -0.629 5.629 21 Si 0.766 3.234 22 H -0.185 1.185 23 H -0.225 1.225 24 H -0.195 1.195 25 C -0.182 4.182 26 C -0.203 4.203 27 C -0.226 4.226 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.266 0.734 38 H 0.225 0.775 39 H 0.204 0.796 40 H 0.257 0.743 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.197 0.803 44 H 0.067 0.933 45 H 0.146 0.854 46 H 0.101 0.899 47 H 0.135 0.865 48 H 0.125 0.875 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.974 14.680 9.517 25.083 hybrid contribution -0.381 0.673 -0.738 1.069 sum 17.593 15.353 8.779 24.946 Atomic orbital electron populations 1.22713 0.94565 1.03224 1.04248 1.20471 0.93179 0.95021 0.83876 1.22055 1.02528 0.92412 1.03560 1.22762 1.03870 1.01214 0.97066 1.55544 1.45466 1.43778 1.41299 1.03644 0.73697 0.74226 0.74537 1.93599 1.39194 1.79517 1.84591 1.93528 1.70799 1.82470 1.50354 1.31427 1.15618 1.08743 1.24413 1.19649 0.77686 0.85488 0.85242 1.90779 1.50170 1.84809 1.19903 1.45844 1.63450 1.09440 1.15376 1.20795 0.94970 0.81908 0.96048 0.91287 1.21036 0.91513 0.93587 0.91114 1.42697 1.48535 1.18306 1.30853 1.19025 1.16095 1.00450 1.00754 0.91734 1.25362 0.99436 1.02067 0.97733 1.69856 1.32215 1.39451 1.21383 0.85673 0.77645 0.81769 0.78328 1.18496 1.22494 1.19472 1.22564 1.00653 1.03755 0.91224 1.23009 1.00985 0.98378 0.97954 1.23258 0.99290 0.98680 1.01363 0.91791 0.88886 0.93075 0.90209 0.89606 0.92223 0.91675 0.89479 0.89430 0.73399 0.77482 0.79618 0.74293 0.93784 0.92907 0.80305 0.93269 0.85405 0.89896 0.86525 0.87542 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 7.09 71.98 0.51 -2.81 16 2 C 0.16 1.97 1.16 3.60 0.00 1.97 16 3 C -0.15 -1.18 8.65 71.98 0.62 -0.56 16 4 C -0.19 -1.58 8.61 71.98 0.62 -0.96 16 5 N -1.10 -15.89 5.42 -152.22 -0.82 -16.71 16 6 S 2.65 64.12 4.25 -56.49 -0.24 63.88 16 7 O -0.98 -31.31 14.49 -127.65 -1.85 -33.16 16 8 O -0.98 -30.51 17.75 -124.01 -2.20 -32.71 16 9 C -0.67 -12.48 4.73 71.24 0.34 -12.15 16 10 C 0.53 14.95 7.18 87.66 0.63 15.58 16 11 O -0.57 -20.66 12.64 1.58 0.02 -20.64 16 12 N -0.69 -18.13 4.50 -442.51 -1.99 -20.12 16 13 C 0.17 4.97 2.43 44.99 0.11 5.08 16 14 H 0.07 2.41 7.33 -2.39 -0.02 2.39 16 15 C 0.15 5.27 5.80 86.38 0.50 5.77 16 16 N -0.76 -33.21 5.24 -343.46 -1.80 -35.01 16 17 C -0.23 -12.61 10.47 84.03 0.88 -11.73 16 18 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 19 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 20 N -0.98 -60.83 13.97 21.65 0.30 -60.53 16 21 Si 0.94 44.20 27.74 68.60 1.90 46.10 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.27 -12.22 6.52 99.48 0.65 -11.57 16 25 C -0.16 -3.96 5.36 -10.79 -0.06 -4.02 16 26 C -0.17 -3.93 10.18 30.62 0.31 -3.61 16 27 C -0.19 -4.77 9.73 30.61 0.30 -4.47 16 28 H 0.06 1.33 7.69 -2.39 -0.02 1.31 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.06 5.23 -2.39 -0.01 1.04 16 31 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.52 4.22 -2.39 -0.01 0.51 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.43 4.42 8.67 -96.74 -0.84 3.58 16 38 H 0.21 1.83 7.93 -2.39 -0.02 1.81 16 39 H 0.19 2.64 5.79 -2.39 -0.01 2.62 16 40 H 0.42 9.11 8.60 -92.71 -0.80 8.31 16 41 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.36 15.73 5.20 -92.71 -0.48 15.25 16 44 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.13 2.62 8.11 -2.39 -0.02 2.60 16 46 H 0.08 2.18 8.05 -2.38 -0.02 2.16 16 47 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 49 H 0.09 2.90 5.02 -2.38 -0.01 2.89 16 Total: -1.00 -82.56 393.25 -2.64 -85.20 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -1.19 Total: 38.21 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.23 Total: -14.51 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -4.31 Total: -132.38 kcal Atomic # 8 Polarization: -82.47 SS G_CDS: -4.03 Total: -86.51 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.10 kcal Atomic # 16 Polarization: 64.12 SS G_CDS: -0.24 Total: 63.88 kcal Total: -82.56 -2.64 -85.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269149860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.501 kcal (2) G-P(sol) polarization free energy of solvation -82.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds