Wall clock time and date at job start Wed Apr 1 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.52702 * 2 1 4 4 N 1.46493 * 109.47274 * 299.92521 * 3 2 1 5 5 C 1.34784 * 120.00100 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99471 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00059 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47185 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47352 * 180.02562 * 8 7 5 10 10 S 1.81394 * 109.47135 * 180.02562 * 9 8 7 11 11 N 1.65597 * 104.45184 * 180.02562 * 10 9 8 12 12 O 1.42100 * 110.54177 * 291.62049 * 10 9 8 13 13 O 1.42096 * 110.54761 * 68.37161 * 10 9 8 14 14 C 1.53351 * 109.47493 * 120.30078 * 2 1 3 15 15 C 1.53041 * 109.60526 * 58.54645 * 14 2 1 16 16 C 1.53194 * 109.31229 * 61.37638 * 15 14 2 17 17 N 1.46917 * 108.77554 * 305.35954 * 16 15 14 18 18 C 1.36933 * 120.63430 * 233.63238 * 17 16 15 19 19 H 1.08005 * 120.00632 * 152.61659 * 18 17 16 20 20 C 1.38816 * 119.99984 * 332.61244 * 18 17 16 21 21 N 1.31622 * 119.99983 * 159.35335 * 20 18 17 22 22 Si 1.86801 * 119.99960 * 339.35455 * 20 18 17 23 23 H 1.48501 * 109.47054 * 92.90061 * 22 20 18 24 24 H 1.48497 * 109.47324 * 212.90565 * 22 20 18 25 25 H 1.48501 * 109.46722 * 332.90341 * 22 20 18 26 26 C 1.46932 * 118.73799 * 53.61305 * 17 16 15 27 27 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46826 * 300.07990 * 1 2 3 29 29 H 1.09002 * 109.47210 * 60.07443 * 1 2 3 30 30 H 1.09002 * 109.47053 * 59.92303 * 3 2 1 31 31 H 1.08998 * 109.47013 * 179.91769 * 3 2 1 32 32 H 0.97000 * 120.00328 * 359.97438 * 4 3 2 33 33 H 1.08995 * 109.47494 * 299.99899 * 7 5 4 34 34 H 1.09007 * 109.47167 * 60.00206 * 7 5 4 35 35 H 1.08995 * 109.47090 * 300.00475 * 8 7 5 36 36 H 1.09007 * 109.46631 * 60.00207 * 8 7 5 37 37 H 1.09002 * 109.47028 * 300.00529 * 9 8 7 38 38 H 1.08994 * 109.46986 * 60.00324 * 9 8 7 39 39 H 0.97007 * 119.99595 * 359.97438 * 11 10 9 40 40 H 0.96999 * 120.00373 * 180.02562 * 11 10 9 41 41 H 1.09003 * 109.41850 * 298.50804 * 14 2 1 42 42 H 1.08995 * 109.43070 * 178.59068 * 14 2 1 43 43 H 1.09000 * 109.50178 * 301.42037 * 15 14 2 44 44 H 1.09007 * 109.49540 * 181.32735 * 15 14 2 45 45 H 1.08999 * 109.58288 * 185.57210 * 16 15 14 46 46 H 1.08999 * 109.70502 * 65.22545 * 16 15 14 47 47 H 0.96999 * 119.99742 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.58853 * 66.17846 * 26 17 16 49 49 H 1.08996 * 109.58543 * 186.45973 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5552 2.1325 -1.1970 5 6 1.8819 3.4227 -1.4102 6 8 2.5781 4.0120 -0.6107 7 6 1.3823 4.1329 -2.6418 8 6 1.8926 5.5753 -2.6411 9 6 1.3848 6.2966 -3.8912 10 16 1.9904 8.0064 -3.8907 11 7 1.3741 8.6636 -5.2801 12 8 1.3766 8.7525 -2.8486 13 8 3.3981 8.0370 -4.0823 14 6 2.0412 -0.7295 1.2483 15 6 1.5032 -2.1621 1.2623 16 6 2.0139 -2.9072 0.0250 17 7 1.6513 -2.1383 -1.1732 18 6 0.9626 -2.7285 -2.1991 19 1 0.3283 -2.1316 -2.8377 20 6 1.0797 -4.0942 -2.4184 21 7 0.1534 -4.7329 -3.1013 22 14 2.5520 -5.0256 -1.7443 23 1 2.2164 -5.5827 -0.4093 24 1 2.9028 -6.1332 -2.6691 25 1 3.7073 -4.1010 -1.6187 26 6 2.0413 -0.7238 -1.2497 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5151 0.8893 29 1 -0.3634 0.5127 -0.8907 30 1 1.6774 1.9566 0.8893 31 1 3.1314 1.4409 0.0015 32 1 0.9982 1.6614 -1.8362 33 1 1.7470 3.6186 -3.5309 34 1 0.2923 4.1335 -2.6438 35 1 1.5276 6.0894 -1.7520 36 1 2.9827 5.5750 -2.6388 37 1 1.7495 5.7826 -4.7805 38 1 0.2949 6.2968 -3.8930 39 1 0.8236 8.1241 -5.8691 40 1 1.5640 9.5878 -5.5053 41 1 1.6995 -0.2044 2.1403 42 1 3.1309 -0.7509 1.2349 43 1 0.4135 -2.1417 1.2507 44 1 1.8484 -2.6715 2.1621 45 1 1.5552 -3.8949 -0.0219 46 1 3.0977 -3.0100 0.0792 47 1 0.2354 -5.6872 -3.2549 48 1 3.1274 -0.6462 -1.2982 49 1 1.6026 -0.2714 -2.1391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270991171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:24 Heat of formation + Delta-G solvation = -135.841128 kcal Electronic energy + Delta-G solvation = -28979.672871 eV Core-core repulsion = 24874.546435 eV Total energy + Delta-G solvation = -4105.126437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.10146 -39.94824 -38.03149 -36.95700 -36.62862 -35.60824 -34.77435 -33.97689 -33.05926 -32.38627 -29.73790 -28.06476 -27.29217 -26.75237 -23.87418 -23.49334 -22.54630 -21.24454 -20.34060 -19.55127 -18.78458 -18.60384 -18.17826 -17.77034 -17.31775 -17.19203 -16.86140 -16.66434 -16.13996 -16.03385 -15.58993 -15.44364 -15.20151 -15.10730 -14.75175 -14.21230 -14.17514 -13.97378 -13.68114 -13.46711 -13.28663 -13.17612 -13.12170 -13.06189 -13.00731 -12.93668 -12.83474 -12.56057 -12.39613 -12.07618 -11.95108 -11.90789 -11.65167 -11.63830 -11.48177 -11.26102 -11.22428 -11.10633 -10.80338 -10.62644 -10.01345 -8.87489 -8.13446 -5.42987 -0.69293 1.30364 1.42252 1.49665 1.69967 2.00942 2.29395 2.43628 2.76792 3.08527 3.34200 3.46848 3.49673 3.82779 3.87432 3.89185 3.92440 3.95053 4.15899 4.27189 4.38122 4.41855 4.43066 4.62298 4.64861 4.68774 4.72106 4.77793 4.84871 4.92107 4.95653 5.00047 5.06089 5.10035 5.11722 5.17357 5.32180 5.33058 5.33511 5.39616 5.53182 5.68243 5.90596 6.16552 6.42051 6.59556 6.95061 7.29247 7.66505 8.08270 9.06042 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.001990 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.220325 B =14066.032896 C =14854.700843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C 0.141 3.859 4 N -0.719 5.719 5 C 0.503 3.497 6 O -0.591 6.591 7 C -0.129 4.129 8 C -0.110 4.110 9 C -0.596 4.596 10 S 2.619 3.381 11 N -1.238 6.238 12 O -1.012 7.012 13 O -1.014 7.014 14 C -0.095 4.095 15 C -0.128 4.128 16 C 0.117 3.883 17 N -0.613 5.613 18 C -0.234 4.234 19 H 0.062 0.938 20 C -0.035 4.035 21 N -0.955 5.955 22 Si 0.939 3.061 23 H -0.280 1.280 24 H -0.316 1.316 25 H -0.266 1.266 26 C 0.158 3.842 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.412 0.588 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.429 0.571 40 H 0.423 0.577 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.026 0.974 47 H 0.259 0.741 48 H 0.023 0.977 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 22.169 -1.591 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C 0.017 3.983 4 N -0.371 5.371 5 C 0.291 3.709 6 O -0.471 6.471 7 C -0.170 4.170 8 C -0.149 4.149 9 C -0.728 4.728 10 S 2.714 3.286 11 N -0.916 5.916 12 O -1.001 7.001 13 O -1.003 7.003 14 C -0.133 4.133 15 C -0.167 4.167 16 C -0.008 4.008 17 N -0.337 5.337 18 C -0.363 4.363 19 H 0.080 0.920 20 C -0.229 4.229 21 N -0.602 5.602 22 Si 0.769 3.231 23 H -0.207 1.207 24 H -0.246 1.246 25 H -0.191 1.191 26 C 0.033 3.967 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.191 0.809 38 H 0.193 0.807 39 H 0.259 0.741 40 H 0.254 0.746 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.041 0.959 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.027 22.869 -0.289 22.871 hybrid contribution 0.001 -1.635 -0.814 1.827 sum 0.028 21.234 -1.103 21.263 Atomic orbital electron populations 1.21704 0.93569 1.01698 1.01322 1.21199 0.96898 0.92989 0.97094 1.21218 0.98469 0.90729 0.87931 1.46107 1.53406 1.11977 1.25614 1.21352 0.79474 0.81748 0.88290 1.90701 1.40219 1.67076 1.49154 1.21703 1.04847 0.94307 0.96098 1.21087 1.01954 0.96105 0.95778 1.30200 1.15345 1.19391 1.07908 1.04188 0.73548 0.77748 0.73069 1.52756 1.70516 1.25238 1.43111 1.93567 1.78033 1.70353 1.58178 1.93569 1.33838 1.87378 1.85495 1.21442 1.00280 0.94753 0.96868 1.21947 1.01184 0.96443 0.97145 1.21399 0.96806 0.95056 0.87569 1.44393 1.65709 1.08000 1.15584 1.18855 1.17961 0.91746 1.07767 0.92039 1.25808 0.99891 0.97938 0.99289 1.69946 1.34508 1.08997 1.46773 0.86039 0.82711 0.77827 0.76487 1.20679 1.24559 1.19080 1.21092 0.96315 0.83081 0.96224 0.93443 0.92019 0.92703 0.91305 0.92421 0.75066 0.85573 0.85146 0.90688 0.90975 0.80909 0.80681 0.74144 0.74630 0.90126 0.91954 0.91903 0.90519 0.93658 0.95660 0.93209 0.95933 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 7.82 71.98 0.56 -2.74 16 2 C -0.08 -2.10 0.53 -52.00 -0.03 -2.12 16 3 C 0.14 3.32 4.58 86.38 0.40 3.71 16 4 N -0.72 -14.73 5.00 -463.07 -2.31 -17.04 16 5 C 0.50 10.82 7.83 87.65 0.69 11.51 16 6 O -0.59 -18.00 15.98 -3.04 -0.05 -18.05 16 7 C -0.13 -1.48 5.70 29.85 0.17 -1.31 16 8 C -0.11 -1.49 4.51 30.59 0.14 -1.35 16 9 C -0.60 -2.86 6.09 71.98 0.44 -2.43 16 10 S 2.62 33.46 5.97 -56.49 -0.34 33.13 16 11 N -1.24 -5.87 9.43 37.02 0.35 -5.52 16 12 O -1.01 -22.41 18.10 -127.65 -2.31 -24.72 16 13 O -1.01 -22.92 18.10 -127.65 -2.31 -25.23 16 14 C -0.10 -2.45 4.73 30.73 0.15 -2.30 16 15 C -0.13 -3.92 5.74 30.67 0.18 -3.75 16 16 C 0.12 4.65 4.21 86.36 0.36 5.02 16 17 N -0.61 -26.24 2.21 -699.09 -1.55 -27.79 16 18 C -0.23 -12.23 10.03 84.03 0.84 -11.39 16 19 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 20 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 21 N -0.96 -57.88 13.97 21.65 0.30 -57.58 16 22 Si 0.94 45.60 24.34 68.60 1.67 47.27 16 23 H -0.28 -12.98 6.62 99.48 0.66 -12.32 16 24 H -0.32 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.27 -12.48 6.64 99.48 0.66 -11.82 16 26 C 0.16 5.30 4.92 86.36 0.43 5.73 16 27 H 0.05 1.57 5.97 -2.39 -0.01 1.55 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 1.32 6.87 -2.39 -0.02 1.30 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.41 7.23 6.22 -92.71 -0.58 6.65 16 33 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.07 1.24 8.10 -2.38 -0.02 1.22 16 37 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.43 -1.14 8.83 -96.74 -0.85 -1.99 16 40 H 0.42 1.83 8.96 -96.75 -0.87 0.96 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 44 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.05 2.04 4.49 -2.39 -0.01 2.03 16 46 H 0.03 1.01 7.07 -2.39 -0.02 0.99 16 47 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 2.03 6.83 -2.39 -0.02 2.01 16 Total: -1.00 -87.50 389.13 -3.19 -90.69 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -1.41 Total: 7.75 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.76 Total: -2.92 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.21 Total: -107.93 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -4.67 Total: -68.00 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.27 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.34 Total: 33.13 kcal Total: -87.50 -3.19 -90.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270991171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.152 kcal (2) G-P(sol) polarization free energy of solvation -87.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds