Wall clock time and date at job start Wed Apr 1 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 H 1.09002 * 109.49918 * 55.00052 * 3 2 1 5 5 C 1.53187 * 109.49842 * 294.93393 * 3 2 1 6 6 N 1.46996 * 108.74195 * 185.41328 * 5 3 2 7 7 C 1.34771 * 120.61985 * 233.56978 * 6 5 3 8 8 O 1.21288 * 119.99790 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00371 * 180.02562 * 7 6 5 10 10 C 1.53007 * 109.47036 * 180.02562 * 9 7 6 11 11 S 1.81400 * 109.46879 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54719 * 291.62408 * 11 10 9 13 13 O 1.42098 * 110.54487 * 68.37811 * 11 10 9 14 14 N 1.65602 * 104.44966 * 180.02562 * 11 10 9 15 15 C 1.46500 * 119.99858 * 65.00367 * 14 11 10 16 16 C 1.46935 * 118.75211 * 53.59038 * 6 5 3 17 17 C 1.53189 * 108.77418 * 306.39315 * 16 6 5 18 18 C 1.53036 * 109.49372 * 175.06532 * 3 2 1 19 19 H 1.09003 * 109.46509 * 61.32997 * 18 3 2 20 20 N 1.46501 * 109.46507 * 301.36782 * 18 3 2 21 21 C 1.36935 * 120.00647 * 155.00025 * 20 18 3 22 22 H 1.08002 * 119.99588 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00113 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00086 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47051 * 89.99560 * 25 23 21 27 27 H 1.48499 * 109.46971 * 209.99820 * 25 23 21 28 28 H 1.48500 * 109.47187 * 329.99743 * 25 23 21 29 29 H 1.08997 * 109.47243 * 59.99712 * 1 2 3 30 30 H 1.08996 * 109.47553 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47108 * 299.99988 * 1 2 3 32 32 H 1.08991 * 109.46805 * 239.99564 * 2 1 3 33 33 H 1.09000 * 109.46978 * 119.99829 * 2 1 3 34 34 H 1.09004 * 109.58908 * 305.17142 * 5 3 2 35 35 H 1.09007 * 109.58837 * 65.59504 * 5 3 2 36 36 H 1.08997 * 109.47390 * 300.00035 * 9 7 6 37 37 H 1.09000 * 109.47331 * 60.00053 * 9 7 6 38 38 H 1.08995 * 109.47213 * 299.99703 * 10 9 7 39 39 H 1.08993 * 109.46851 * 60.00512 * 10 9 7 40 40 H 0.96998 * 120.00020 * 244.99504 * 14 11 10 41 41 H 1.08994 * 109.47345 * 59.99336 * 15 14 11 42 42 H 1.08995 * 109.46938 * 180.02562 * 15 14 11 43 43 H 1.09010 * 109.46506 * 299.99759 * 15 14 11 44 44 H 1.09001 * 109.58491 * 186.60872 * 16 6 5 45 45 H 1.08995 * 109.70157 * 66.25296 * 16 6 5 46 46 H 1.09001 * 109.50029 * 294.68601 * 17 16 6 47 47 H 1.09004 * 109.49703 * 174.58693 * 17 16 6 48 48 H 0.97000 * 119.99453 * 335.00255 * 20 18 3 49 49 H 0.96998 * 120.00182 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9820 0.8417 5 6 1.6364 2.1275 -1.3094 6 7 2.2435 3.4656 -1.3491 7 6 1.4840 4.5579 -1.5647 8 8 0.2877 4.4421 -1.7278 9 6 2.1210 5.9230 -1.6031 10 6 1.0456 6.9805 -1.8608 11 16 1.8125 8.6237 -1.9078 12 8 2.2856 8.9904 -0.6190 13 8 2.6387 8.7558 -3.0563 14 7 0.5520 9.6601 -2.1895 15 6 -0.5085 9.8123 -1.1903 16 6 3.6939 3.5899 -1.1497 17 6 4.0737 2.8881 0.1580 18 6 3.5653 1.4450 0.1241 19 1 4.0001 0.9268 -0.7307 20 7 3.9557 0.7609 1.3593 21 6 5.1939 0.1851 1.4613 22 1 5.8826 0.2350 0.6308 23 6 5.5635 -0.4635 2.6316 24 7 4.7240 -0.5247 3.6434 25 14 7.2529 -1.2483 2.7708 26 1 8.2169 -0.2557 3.3100 27 1 7.1822 -2.4167 3.6848 28 1 7.7027 -1.6965 1.4284 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9935 1.5392 -2.1548 35 1 0.5509 2.2163 -1.3560 36 1 2.6066 6.1244 -0.6484 37 1 2.8620 5.9559 -2.4018 38 1 0.5595 6.7794 -2.8154 39 1 0.3049 6.9476 -1.0618 40 1 0.5159 10.1665 -3.0161 41 1 -0.0778 10.1695 -0.2549 42 1 -1.2455 10.5307 -1.5492 43 1 -0.9915 8.8494 -1.0236 44 1 3.9657 4.6439 -1.0910 45 1 4.2206 3.1225 -1.9816 46 1 3.6202 3.4139 0.9982 47 1 5.1580 2.8893 0.2699 48 1 3.3369 0.7158 2.1050 49 1 4.9824 -0.9776 4.4613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276739479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:28 Heat of formation + Delta-G solvation = -105.308174 kcal Electronic energy + Delta-G solvation = -29481.533509 eV Core-core repulsion = 25377.731081 eV Total energy + Delta-G solvation = -4103.802428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.30649 -37.97779 -37.45166 -36.31128 -35.40982 -34.82219 -33.96165 -33.33818 -31.76763 -29.56105 -28.90315 -26.41748 -26.11804 -24.40540 -23.77268 -22.70967 -20.87869 -20.02059 -19.66744 -19.07967 -18.18387 -17.57816 -17.11772 -16.82778 -16.25656 -15.98404 -15.91572 -15.08761 -14.96384 -14.44718 -14.16688 -14.02699 -14.00334 -13.73498 -13.36861 -13.27037 -13.22252 -13.09713 -12.82092 -12.67845 -12.44157 -12.33831 -12.17553 -12.03545 -11.86230 -11.80556 -11.65961 -11.34097 -11.22872 -10.96195 -10.88611 -10.73956 -10.40390 -10.24890 -10.18288 -10.05657 -9.86116 -9.72988 -9.63852 -8.93501 -8.56792 -7.00239 -5.80770 -3.09678 -0.13743 2.31647 2.51692 2.94263 3.40360 3.40758 3.45909 3.47453 3.85335 4.02879 4.37657 4.43364 4.54663 4.55526 4.86065 4.97634 5.02981 5.09512 5.17435 5.20444 5.26368 5.30343 5.31077 5.40615 5.43702 5.53103 5.56708 5.63646 5.63889 5.83467 5.96584 6.07165 6.10827 6.27123 6.30557 6.34736 6.41337 6.47114 6.50124 6.62581 6.78397 6.91219 7.00966 7.39340 7.65640 8.08214 8.37330 9.48958 10.05842 10.40651 11.41610 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.002436 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.685987 B =11492.026348 C =12600.756884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.604 5.604 7 C 0.523 3.477 8 O -0.546 6.546 9 C -0.136 4.136 10 C -0.610 4.610 11 S 2.614 3.386 12 O -0.951 6.951 13 O -0.957 6.957 14 N -1.124 6.124 15 C 0.080 3.920 16 C 0.101 3.899 17 C -0.154 4.154 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.418 0.582 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 17.097 -13.379 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.336 5.336 7 C 0.310 3.690 8 O -0.425 6.425 9 C -0.177 4.177 10 C -0.740 4.740 11 S 2.705 3.295 12 O -0.941 6.941 13 O -0.947 6.947 14 N -0.883 5.883 15 C -0.067 4.067 16 C -0.022 4.022 17 C -0.195 4.195 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.252 0.748 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.666 17.093 -13.173 24.072 hybrid contribution 0.211 -0.648 0.099 0.689 sum -10.455 16.445 -13.075 23.466 Atomic orbital electron populations 1.21843 0.96824 1.01063 1.01254 1.21450 0.94352 0.95656 1.03525 1.21787 0.97716 0.96312 0.96663 0.91175 1.21802 0.99412 0.81210 0.97959 1.48186 1.08680 1.06793 1.69939 1.20085 0.86851 0.85565 0.76529 1.90668 1.14722 1.86492 1.50574 1.21401 0.97811 0.92840 1.05681 1.30396 1.11131 1.19545 1.12907 1.04968 0.73741 0.76366 0.74454 1.93625 1.77915 1.80691 1.41856 1.93617 1.64502 1.85601 1.50974 1.55371 1.42820 1.59888 1.30184 1.21541 0.90444 1.02728 0.91973 1.21967 0.79211 1.01344 0.99668 1.22715 1.02450 0.99342 0.94979 1.20183 0.90724 0.90504 0.91305 0.93371 1.42406 1.16467 1.64417 1.12724 1.19202 0.91770 1.27390 0.98647 0.91232 1.24729 0.98133 1.01503 0.96447 1.69653 1.35207 1.48337 1.04761 0.86226 0.84117 0.78745 0.77289 1.21761 1.21837 1.20803 0.93269 0.93142 0.93003 0.92439 0.89733 0.91527 0.89083 0.87080 0.87286 0.84126 0.84247 0.74846 0.91182 0.89921 0.92013 0.90430 0.91008 0.92035 0.90316 0.78192 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 1.92 -90.51 -0.17 -1.82 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.12 1.64 5.33 -3.67 -0.02 1.62 16 6 N -0.60 -7.93 2.97 -172.71 -0.51 -8.44 16 7 C 0.52 6.82 7.70 -10.99 -0.08 6.73 16 8 O -0.55 -8.56 15.40 5.55 0.09 -8.47 16 9 C -0.14 -1.29 4.05 -27.88 -0.11 -1.41 16 10 C -0.61 -4.76 5.31 37.16 0.20 -4.57 16 11 S 2.61 21.76 5.46 -107.50 -0.59 21.17 16 12 O -0.95 -11.23 17.73 -57.54 -1.02 -12.25 16 13 O -0.96 -10.73 18.08 -57.54 -1.04 -11.77 16 14 N -1.12 -6.34 6.08 -16.63 -0.10 -6.44 16 15 C 0.08 0.35 11.03 59.85 0.66 1.01 16 16 C 0.10 1.22 6.34 -3.71 -0.02 1.20 16 17 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 18 C 0.18 3.31 2.19 -67.89 -0.15 3.16 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -16.75 4.33 -53.38 -0.23 -16.98 16 21 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 25 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.31 5.73 -51.92 -0.30 1.01 16 36 H 0.11 0.93 7.69 -51.93 -0.40 0.53 16 37 H 0.11 0.82 7.94 -51.93 -0.41 0.40 16 38 H 0.14 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.14 1.00 7.73 -51.93 -0.40 0.60 16 40 H 0.42 1.67 8.92 -34.47 -0.31 1.36 16 41 H 0.07 0.35 8.04 -51.93 -0.42 -0.06 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.06 0.20 7.73 -51.92 -0.40 -0.20 16 44 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.38 9.71 7.51 -40.82 -0.31 9.40 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -35.75 400.66 -9.72 -45.47 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.16 Total: 8.55 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.12 Total: -7.08 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.12 Total: -58.43 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.97 Total: -32.49 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 21.76 SS G_CDS: -0.59 Total: 21.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.75 -9.72 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276739479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.843 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds