Wall clock time and date at job start Wed Apr 1 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47192 * 179.97438 * 3 2 1 5 5 S 1.81404 * 109.47291 * 180.02562 * 4 3 2 6 6 O 1.42097 * 110.54022 * 68.37532 * 5 4 3 7 7 O 1.42103 * 110.54133 * 291.63100 * 5 4 3 8 8 N 1.65593 * 104.44926 * 180.02562 * 5 4 3 9 9 C 1.46495 * 120.00148 * 65.00313 * 8 5 4 10 10 C 1.50710 * 109.47128 * 165.00024 * 9 8 5 11 11 O 1.21280 * 119.99665 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99850 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64864 * 0.02562 * 12 10 9 14 14 C 1.54912 * 104.82843 * 155.83653 * 13 12 10 15 15 H 1.09008 * 111.00276 * 155.12163 * 14 13 12 16 16 N 1.46504 * 111.00694 * 278.93353 * 14 13 12 17 17 C 1.36935 * 119.99849 * 273.55149 * 16 14 13 18 18 H 1.07997 * 120.00561 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99619 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00303 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 119.99829 * 21 19 17 24 24 H 1.48498 * 109.47295 * 240.00436 * 21 19 17 25 25 C 1.55155 * 101.58482 * 37.01243 * 14 13 12 26 26 C 1.47017 * 125.64796 * 179.97438 * 12 10 9 27 27 H 1.09004 * 109.88515 * 300.66947 * 26 12 10 28 28 C 1.52999 * 109.88579 * 61.67678 * 26 12 10 29 29 H 1.09001 * 109.47274 * 59.99361 * 1 2 3 30 30 H 1.09002 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46902 * 299.99628 * 1 2 3 32 32 H 1.09006 * 109.46902 * 240.00372 * 2 1 3 33 33 H 1.08996 * 109.47442 * 120.00188 * 2 1 3 34 34 H 1.09006 * 109.46894 * 60.00366 * 3 2 1 35 35 H 1.08996 * 109.47080 * 300.00410 * 3 2 1 36 36 H 1.09006 * 109.46902 * 60.00372 * 4 3 2 37 37 H 1.09001 * 109.47274 * 300.00639 * 4 3 2 38 38 H 0.97004 * 119.99849 * 244.99567 * 8 5 4 39 39 H 1.08993 * 109.47310 * 44.99956 * 9 8 5 40 40 H 1.09001 * 109.47181 * 284.99169 * 9 8 5 41 41 H 1.08992 * 110.36957 * 37.00094 * 13 12 10 42 42 H 1.08996 * 110.36611 * 274.67292 * 13 12 10 43 43 H 0.96996 * 119.99617 * 93.54836 * 16 14 13 44 44 H 0.97000 * 119.99517 * 0.02562 * 20 19 17 45 45 H 1.08996 * 110.72280 * 82.86074 * 25 14 13 46 46 H 1.09001 * 110.72130 * 206.13653 * 25 14 13 47 47 H 1.09006 * 109.47150 * 58.54651 * 28 26 12 48 48 H 1.08997 * 109.47571 * 178.54717 * 28 26 12 49 49 H 1.09005 * 109.47119 * 298.55284 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1747 3.1528 0.0014 6 8 3.8781 3.7859 1.2384 7 8 3.8790 3.7868 -1.2355 8 7 5.8243 3.0078 0.0013 9 6 6.5071 2.4101 -1.1488 10 6 7.9798 2.7218 -1.0763 11 8 8.4159 3.3789 -0.1550 12 7 8.8121 2.2703 -2.0354 13 6 8.4179 1.4651 -3.2058 14 6 9.5197 1.7338 -4.2611 15 1 9.5941 0.9069 -4.9675 16 7 9.2794 2.9984 -4.9608 17 6 8.4661 3.0277 -6.0621 18 1 8.0021 2.1187 -6.4151 19 6 8.2381 4.2260 -6.7247 20 7 8.8033 5.3340 -6.2942 21 14 7.1292 4.2660 -8.2274 22 1 6.6206 2.8985 -8.5038 23 1 5.9846 5.1775 -7.9739 24 1 7.9005 4.7539 -9.3989 25 6 10.7879 1.8225 -3.3718 26 6 10.2632 2.5000 -2.0883 27 1 10.4682 3.5701 -2.1207 28 6 10.9335 1.8791 -0.8611 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 6.3385 3.3187 0.7628 39 1 6.0938 2.8203 -2.0701 40 1 6.3634 1.3297 -1.1354 41 1 7.4470 1.7897 -3.5800 42 1 8.3910 0.4068 -2.9465 43 1 9.6965 3.8148 -4.6439 44 1 9.3794 5.3131 -5.5141 45 1 11.1753 0.8277 -3.1522 46 1 11.5509 2.4381 -3.8484 47 1 10.7180 0.8110 -0.8308 48 1 12.0112 2.0308 -0.9200 49 1 10.5486 2.3531 0.0419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284026764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:40 Heat of formation + Delta-G solvation = -105.437617 kcal Electronic energy + Delta-G solvation = -29516.000338 eV Core-core repulsion = 25412.192297 eV Total energy + Delta-G solvation = -4103.808041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.11362 -37.76475 -37.21947 -36.23165 -36.02154 -34.82959 -34.30487 -31.85978 -31.38960 -30.87859 -28.30764 -27.06736 -25.63661 -24.73965 -23.59444 -22.16929 -21.71725 -20.30088 -19.58898 -18.98947 -17.95239 -17.50293 -16.83257 -16.65709 -16.43575 -16.02756 -15.95553 -15.20066 -14.86698 -14.71129 -14.34938 -14.11402 -13.76552 -13.69872 -13.65747 -13.31596 -13.22517 -12.89390 -12.73639 -12.40572 -12.26676 -12.21577 -12.12194 -12.10610 -12.01998 -11.96980 -11.75877 -11.68297 -11.19406 -11.08509 -10.96343 -10.76333 -10.73405 -10.57137 -10.38093 -10.07918 -9.87108 -9.62603 -9.25729 -9.09310 -8.42327 -7.15643 -6.18152 -3.21134 0.04312 2.46420 2.70143 3.16086 3.48628 3.55730 3.59213 3.63988 3.96576 4.14109 4.41356 4.43279 4.52874 4.59828 4.76695 4.88363 4.96212 4.99193 5.02069 5.09463 5.15500 5.21490 5.25399 5.32845 5.34638 5.44169 5.47573 5.48877 5.56668 5.64854 5.65712 5.72556 5.74566 5.83853 5.87386 6.00703 6.03978 6.24690 6.25486 6.41487 6.51416 6.62048 6.84540 7.71172 7.71930 8.24640 8.67006 9.10522 9.97413 10.10741 11.29401 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.003290 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.742453 B = 8509.621788 C =10307.498146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.114 4.114 4 C -0.632 4.632 5 S 2.612 3.388 6 O -0.955 6.955 7 O -0.946 6.946 8 N -1.107 6.107 9 C 0.099 3.901 10 C 0.530 3.470 11 O -0.544 6.544 12 N -0.596 5.596 13 C 0.063 3.937 14 C 0.175 3.825 15 H 0.073 0.927 16 N -0.723 5.723 17 C -0.342 4.342 18 H 0.068 0.932 19 C -0.039 4.039 20 N -0.937 5.937 21 Si 1.084 2.916 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.138 4.138 26 C 0.138 3.862 27 H 0.073 0.927 28 C -0.159 4.159 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.426 0.574 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -15.107 13.525 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.761 4.761 5 S 2.704 3.296 6 O -0.946 6.946 7 O -0.936 6.936 8 N -0.870 5.870 9 C -0.031 4.031 10 C 0.316 3.684 11 O -0.422 6.422 12 N -0.329 5.329 13 C -0.064 4.064 14 C 0.062 3.938 15 H 0.091 0.909 16 N -0.365 5.365 17 C -0.473 4.473 18 H 0.086 0.914 19 C -0.237 4.237 20 N -0.581 5.581 21 Si 0.915 3.085 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.177 4.177 26 C 0.035 3.965 27 H 0.092 0.908 28 C -0.217 4.217 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.264 0.736 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.202 0.798 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.930 -13.162 12.614 20.300 hybrid contribution 1.160 -1.434 1.542 2.404 sum -7.770 -14.595 14.156 21.766 Atomic orbital electron populations 1.21820 0.95398 1.02010 1.02263 1.21477 0.96148 0.95205 1.02643 1.21383 0.90071 0.99994 1.03899 1.30664 1.06919 1.26639 1.11860 1.05005 0.72834 0.77238 0.74524 1.93608 1.82906 1.72868 1.45188 1.93654 1.83063 1.71628 1.45274 1.55362 1.25786 1.78083 1.27747 1.21075 0.92264 0.98949 0.90788 1.19843 0.87462 0.79461 0.81587 1.90649 1.77291 1.39925 1.34356 1.48371 1.07995 1.52551 1.23951 1.23493 1.02883 0.93366 0.86614 1.21246 0.90174 0.91291 0.91049 0.90918 1.42361 1.57711 1.04109 1.32285 1.20048 1.24884 0.96696 1.05650 0.91391 1.25797 1.02387 0.91583 1.03970 1.70824 1.33142 1.27861 1.26318 0.83176 0.75624 0.74641 0.75082 1.22007 1.21856 1.21975 1.23056 0.99032 1.00918 0.94697 1.21505 0.79578 1.00115 0.95298 0.90846 1.22132 1.00299 1.00579 0.98723 0.92321 0.92408 0.92482 0.91383 0.91593 0.90267 0.90018 0.84783 0.84785 0.73615 0.86785 0.89094 0.89874 0.92205 0.79773 0.93196 0.90466 0.89860 0.92791 0.91903 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.11 -0.86 5.22 -26.73 -0.14 -1.00 16 4 C -0.63 -4.57 6.07 37.16 0.23 -4.35 16 5 S 2.61 30.67 5.46 -107.50 -0.59 30.08 16 6 O -0.96 -13.83 18.08 -57.54 -1.04 -14.87 16 7 O -0.95 -15.06 17.49 -57.54 -1.01 -16.06 16 8 N -1.11 -13.54 5.82 -11.66 -0.07 -13.61 16 9 C 0.10 1.25 5.62 -5.19 -0.03 1.22 16 10 C 0.53 8.50 7.71 -10.98 -0.08 8.41 16 11 O -0.54 -10.05 14.77 5.56 0.08 -9.97 16 12 N -0.60 -9.26 3.06 -163.02 -0.50 -9.76 16 13 C 0.06 0.93 6.39 -2.53 -0.02 0.91 16 14 C 0.17 2.99 3.69 -65.78 -0.24 2.75 16 15 H 0.07 1.21 8.13 -51.92 -0.42 0.79 16 16 N -0.72 -16.53 5.26 -51.35 -0.27 -16.80 16 17 C -0.34 -8.93 9.98 -15.06 -0.15 -9.08 16 18 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 19 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 20 N -0.94 -28.44 13.70 55.49 0.76 -27.68 16 21 Si 1.08 25.31 29.92 -169.99 -5.09 20.22 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.14 -1.95 6.05 -24.90 -0.15 -2.10 16 26 C 0.14 2.08 3.45 -66.95 -0.23 1.85 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 C -0.16 -2.03 9.10 37.16 0.34 -1.69 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.43 5.39 7.67 -34.46 -0.26 5.12 16 39 H 0.11 1.57 7.40 -51.93 -0.38 1.18 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.37 9.05 6.65 -40.82 -0.27 8.78 16 44 H 0.26 7.71 6.77 -40.82 -0.28 7.43 16 45 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.96 6.88 -51.93 -0.36 0.60 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -36.66 408.30 -10.25 -46.90 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.32 Total: 11.11 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.37 Total: -5.71 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.08 Total: -67.86 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.96 Total: -40.91 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Atomic # 16 Polarization: 30.67 SS G_CDS: -0.59 Total: 30.08 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.66 -10.25 -46.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284026764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.533 kcal (2) G-P(sol) polarization free energy of solvation -36.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds