Wall clock time and date at job start Wed Apr 1 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47192 * 179.97438 * 3 2 1 5 5 S 1.81404 * 109.47291 * 180.02562 * 4 3 2 6 6 O 1.42097 * 110.54022 * 68.37532 * 5 4 3 7 7 O 1.42103 * 110.54133 * 291.63100 * 5 4 3 8 8 N 1.65593 * 104.44926 * 180.02562 * 5 4 3 9 9 C 1.46495 * 120.00148 * 65.00313 * 8 5 4 10 10 C 1.50710 * 109.47128 * 165.00024 * 9 8 5 11 11 O 1.21280 * 119.99665 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99850 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64864 * 0.02562 * 12 10 9 14 14 C 1.54912 * 104.82843 * 155.83653 * 13 12 10 15 15 H 1.09008 * 111.00276 * 155.12163 * 14 13 12 16 16 N 1.46504 * 111.00694 * 278.93353 * 14 13 12 17 17 C 1.36935 * 119.99849 * 273.55149 * 16 14 13 18 18 H 1.07997 * 120.00561 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99619 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00303 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 119.99829 * 21 19 17 24 24 H 1.48498 * 109.47295 * 240.00436 * 21 19 17 25 25 C 1.55155 * 101.58482 * 37.01243 * 14 13 12 26 26 C 1.47017 * 125.64796 * 179.97438 * 12 10 9 27 27 H 1.09004 * 109.88515 * 300.66947 * 26 12 10 28 28 C 1.52999 * 109.88579 * 61.67678 * 26 12 10 29 29 H 1.09001 * 109.47274 * 59.99361 * 1 2 3 30 30 H 1.09002 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46902 * 299.99628 * 1 2 3 32 32 H 1.09006 * 109.46902 * 240.00372 * 2 1 3 33 33 H 1.08996 * 109.47442 * 120.00188 * 2 1 3 34 34 H 1.09006 * 109.46894 * 60.00366 * 3 2 1 35 35 H 1.08996 * 109.47080 * 300.00410 * 3 2 1 36 36 H 1.09006 * 109.46902 * 60.00372 * 4 3 2 37 37 H 1.09001 * 109.47274 * 300.00639 * 4 3 2 38 38 H 0.97004 * 119.99849 * 244.99567 * 8 5 4 39 39 H 1.08993 * 109.47310 * 44.99956 * 9 8 5 40 40 H 1.09001 * 109.47181 * 284.99169 * 9 8 5 41 41 H 1.08992 * 110.36957 * 37.00094 * 13 12 10 42 42 H 1.08996 * 110.36611 * 274.67292 * 13 12 10 43 43 H 0.96996 * 119.99617 * 93.54836 * 16 14 13 44 44 H 0.97000 * 119.99517 * 0.02562 * 20 19 17 45 45 H 1.08996 * 110.72280 * 82.86074 * 25 14 13 46 46 H 1.09001 * 110.72130 * 206.13653 * 25 14 13 47 47 H 1.09006 * 109.47150 * 58.54651 * 28 26 12 48 48 H 1.08997 * 109.47571 * 178.54717 * 28 26 12 49 49 H 1.09005 * 109.47119 * 298.55284 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1747 3.1528 0.0014 6 8 3.8781 3.7859 1.2384 7 8 3.8790 3.7868 -1.2355 8 7 5.8243 3.0078 0.0013 9 6 6.5071 2.4101 -1.1488 10 6 7.9798 2.7218 -1.0763 11 8 8.4159 3.3789 -0.1550 12 7 8.8121 2.2703 -2.0354 13 6 8.4179 1.4651 -3.2058 14 6 9.5197 1.7338 -4.2611 15 1 9.5941 0.9069 -4.9675 16 7 9.2794 2.9984 -4.9608 17 6 8.4661 3.0277 -6.0621 18 1 8.0021 2.1187 -6.4151 19 6 8.2381 4.2260 -6.7247 20 7 8.8033 5.3340 -6.2942 21 14 7.1292 4.2660 -8.2274 22 1 6.6206 2.8985 -8.5038 23 1 5.9846 5.1775 -7.9739 24 1 7.9005 4.7539 -9.3989 25 6 10.7879 1.8225 -3.3718 26 6 10.2632 2.5000 -2.0883 27 1 10.4682 3.5701 -2.1207 28 6 10.9335 1.8791 -0.8611 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9287 0.8908 38 1 6.3385 3.3187 0.7628 39 1 6.0938 2.8203 -2.0701 40 1 6.3634 1.3297 -1.1354 41 1 7.4470 1.7897 -3.5800 42 1 8.3910 0.4068 -2.9465 43 1 9.6965 3.8148 -4.6439 44 1 9.3794 5.3131 -5.5141 45 1 11.1753 0.8277 -3.1522 46 1 11.5509 2.4381 -3.8484 47 1 10.7180 0.8110 -0.8308 48 1 12.0112 2.0308 -0.9200 49 1 10.5486 2.3531 0.0419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284026764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:39 Heat of formation + Delta-G solvation = -134.213098 kcal Electronic energy + Delta-G solvation = -29517.248137 eV Core-core repulsion = 25412.192297 eV Total energy + Delta-G solvation = -4105.055840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34788 -39.05671 -38.27656 -37.14793 -36.68759 -36.19286 -35.75575 -33.25081 -32.83969 -31.41961 -29.91489 -28.12972 -26.77794 -25.56099 -25.30836 -23.40259 -22.21865 -21.63462 -20.54588 -20.13827 -19.44274 -18.95270 -17.90286 -17.73872 -17.40917 -17.10114 -16.83121 -16.60759 -16.10288 -15.97752 -15.53989 -15.18558 -14.96000 -14.86564 -14.70503 -14.30480 -14.05717 -13.99587 -13.81297 -13.57741 -13.32421 -13.28809 -13.26779 -13.18373 -13.00647 -12.75169 -12.68519 -12.56945 -12.48236 -12.19130 -12.17482 -12.12867 -11.81406 -11.69087 -11.53888 -11.50740 -11.18126 -11.11335 -10.94275 -10.58502 -9.73035 -9.06098 -8.34098 -5.29638 -0.84468 1.45838 1.53755 1.60632 1.71949 1.81586 2.02846 2.74076 2.74219 3.15434 3.28200 3.42652 3.52103 3.70299 3.75809 3.80332 3.85019 4.03187 4.05986 4.11289 4.22553 4.28647 4.31449 4.41638 4.44402 4.56105 4.57168 4.66419 4.70248 4.72239 4.76853 4.89493 4.90089 4.97568 5.05511 5.13908 5.17940 5.21532 5.29932 5.30237 5.43854 5.44398 5.68153 5.84029 6.50589 6.51587 7.02135 7.11037 8.00290 8.14901 9.17216 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.003290 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.742453 B = 8509.621788 C =10307.498146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.129 4.129 4 C -0.595 4.595 5 S 2.607 3.393 6 O -0.992 6.992 7 O -1.000 7.000 8 N -1.111 6.111 9 C 0.099 3.901 10 C 0.518 3.482 11 O -0.578 6.578 12 N -0.599 5.599 13 C 0.071 3.929 14 C 0.158 3.842 15 H 0.087 0.913 16 N -0.740 5.740 17 C -0.319 4.319 18 H 0.081 0.919 19 C -0.110 4.110 20 N -0.982 5.982 21 Si 1.126 2.874 22 H -0.260 1.260 23 H -0.302 1.302 24 H -0.296 1.296 25 C -0.122 4.122 26 C 0.132 3.868 27 H 0.035 0.965 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.423 0.577 39 H 0.099 0.901 40 H 0.146 0.854 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.354 0.646 44 H 0.241 0.759 45 H 0.118 0.882 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -19.752 13.854 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.153 4.153 3 C -0.168 4.168 4 C -0.730 4.730 5 S 2.705 3.295 6 O -0.983 6.983 7 O -0.990 6.990 8 N -0.872 5.872 9 C -0.030 4.030 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.331 5.331 13 C -0.054 4.054 14 C 0.049 3.951 15 H 0.105 0.895 16 N -0.381 5.381 17 C -0.450 4.450 18 H 0.099 0.901 19 C -0.300 4.300 20 N -0.631 5.631 21 Si 0.952 3.048 22 H -0.184 1.184 23 H -0.230 1.230 24 H -0.223 1.223 25 C -0.160 4.160 26 C 0.029 3.971 27 H 0.053 0.947 28 C -0.204 4.204 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.163 0.837 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.186 0.814 44 H 0.052 0.948 45 H 0.136 0.864 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.466 -17.840 12.952 23.992 hybrid contribution 1.343 -0.116 1.505 2.021 sum -8.122 -17.956 14.456 24.442 Atomic orbital electron populations 1.21863 0.95482 1.02514 1.02096 1.21492 0.96134 0.93985 1.03661 1.21574 0.90047 1.01240 1.03935 1.30385 1.06615 1.20963 1.14992 1.04955 0.72397 0.79382 0.72722 1.93551 1.83203 1.75448 1.46076 1.93586 1.83612 1.74798 1.47003 1.55276 1.25803 1.78693 1.27439 1.21243 0.89543 1.01995 0.90229 1.20499 0.88853 0.78860 0.81185 1.90632 1.78161 1.41256 1.35797 1.48497 1.08179 1.52520 1.23924 1.23424 1.00775 0.95830 0.85344 1.21633 0.92557 0.88986 0.91953 0.89547 1.42612 1.57374 1.05756 1.32338 1.20442 1.22855 0.96479 1.05227 0.90127 1.27072 1.04239 0.91831 1.06903 1.70948 1.35656 1.29365 1.27135 0.82637 0.73783 0.76047 0.72305 1.18432 1.23006 1.22311 1.22985 0.97341 1.02705 0.93006 1.21555 0.79986 0.98404 0.97159 0.94690 1.22017 1.00874 1.01324 0.96211 0.92778 0.91558 0.92506 0.90568 0.90331 0.90179 0.90551 0.81896 0.81513 0.74019 0.88285 0.83673 0.91313 0.87159 0.81450 0.94808 0.86385 0.91042 0.90529 0.90276 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.11 -1.05 5.93 30.59 0.18 -0.86 16 3 C -0.13 -1.61 5.22 30.59 0.16 -1.45 16 4 C -0.60 -6.54 6.07 71.98 0.44 -6.10 16 5 S 2.61 60.33 5.46 -56.49 -0.31 60.02 16 6 O -0.99 -29.33 18.08 -127.65 -2.31 -31.64 16 7 O -1.00 -32.80 17.49 -127.65 -2.23 -35.03 16 8 N -1.11 -26.55 5.82 -190.79 -1.11 -27.66 16 9 C 0.10 2.34 5.62 85.64 0.48 2.82 16 10 C 0.52 16.25 7.71 87.66 0.68 16.92 16 11 O -0.58 -21.74 14.77 -3.03 -0.04 -21.78 16 12 N -0.60 -17.70 3.06 -788.06 -2.41 -20.11 16 13 C 0.07 1.88 6.39 86.86 0.55 2.43 16 14 C 0.16 5.04 3.69 46.38 0.17 5.21 16 15 H 0.09 2.56 8.13 -2.38 -0.02 2.54 16 16 N -0.74 -33.80 5.26 -316.36 -1.67 -35.47 16 17 C -0.32 -16.46 9.98 84.03 0.84 -15.62 16 18 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 19 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 20 N -0.98 -61.88 13.70 21.65 0.30 -61.58 16 21 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 25 C -0.12 -3.15 6.05 31.78 0.19 -2.96 16 26 C 0.13 3.86 3.45 45.34 0.16 4.01 16 27 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 28 C -0.15 -3.41 9.10 71.98 0.66 -2.76 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.42 10.83 7.67 -96.75 -0.74 10.09 16 39 H 0.10 2.67 7.40 -2.39 -0.02 2.65 16 40 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.35 18.06 6.65 -92.71 -0.62 17.44 16 44 H 0.24 15.30 6.77 -92.71 -0.63 14.67 16 45 H 0.12 2.14 7.85 -2.39 -0.02 2.12 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.04 1.25 6.88 -2.38 -0.02 1.24 16 Total: -1.00 -85.26 408.30 -2.32 -87.58 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.27 Total: 37.31 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.68 Total: -4.92 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -4.89 Total: -144.82 kcal Atomic # 8 Polarization: -83.86 SS G_CDS: -4.59 Total: -88.45 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Atomic # 16 Polarization: 60.33 SS G_CDS: -0.31 Total: 60.02 kcal Total: -85.26 -2.32 -87.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284026764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.632 kcal (2) G-P(sol) polarization free energy of solvation -85.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds