Wall clock time and date at job start Wed Apr 1 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47032 * 2 1 4 4 C 1.53000 * 109.47032 * 120.00308 * 2 1 3 5 5 H 1.08997 * 109.47221 * 63.93963 * 4 2 1 6 6 N 1.46502 * 109.47228 * 303.94102 * 4 2 1 7 7 S 1.65602 * 120.00049 * 97.39732 * 6 4 2 8 8 C 1.81399 * 104.44929 * 68.45681 * 7 6 4 9 9 O 1.42098 * 104.27584 * 184.52933 * 7 6 4 10 10 O 1.42106 * 104.27676 * 312.38616 * 7 6 4 11 11 C 1.50702 * 109.47107 * 183.93970 * 4 2 1 12 12 O 1.21278 * 120.00019 * 334.63433 * 11 4 2 13 13 N 1.34774 * 119.99881 * 154.62431 * 11 4 2 14 14 C 1.46507 * 120.00065 * 6.16948 * 13 11 4 15 15 C 1.46502 * 120.00129 * 186.16807 * 13 11 4 16 16 C 1.53781 * 113.68945 * 263.95119 * 15 13 11 17 17 C 1.53780 * 87.08138 * 89.12262 * 16 15 13 18 18 N 1.46494 * 113.61733 * 270.88063 * 17 16 15 19 19 C 1.36941 * 120.00276 * 187.86217 * 18 17 16 20 20 H 1.07999 * 119.99613 * 4.04121 * 19 18 17 21 21 C 1.38810 * 120.00112 * 184.04212 * 19 18 17 22 22 N 1.31617 * 119.99876 * 174.66415 * 21 19 18 23 23 Si 1.86797 * 120.00143 * 354.66385 * 21 19 18 24 24 H 1.48496 * 109.47219 * 95.29391 * 23 21 19 25 25 H 1.48507 * 109.47345 * 215.29645 * 23 21 19 26 26 H 1.48507 * 109.46975 * 335.29253 * 23 21 19 27 27 C 1.53776 * 113.61318 * 1.48314 * 15 13 11 28 28 H 1.09004 * 109.46981 * 295.95423 * 1 2 3 29 29 H 1.09001 * 109.47319 * 55.95520 * 1 2 3 30 30 H 1.08997 * 109.47572 * 175.95859 * 1 2 3 31 31 H 1.09004 * 109.46672 * 240.00069 * 2 1 3 32 32 H 1.09009 * 109.46938 * 185.06468 * 3 2 1 33 33 H 1.08990 * 109.47569 * 305.06527 * 3 2 1 34 34 H 1.09003 * 109.47221 * 65.07074 * 3 2 1 35 35 H 0.97002 * 119.99903 * 277.40369 * 6 4 2 36 36 H 1.08999 * 109.47183 * 59.99860 * 8 7 6 37 37 H 1.08992 * 109.47584 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.46985 * 300.00328 * 8 7 6 39 39 H 1.08996 * 109.47152 * 275.68079 * 14 13 11 40 40 H 1.08994 * 109.46861 * 35.68234 * 14 13 11 41 41 H 1.08999 * 109.47225 * 155.68328 * 14 13 11 42 42 H 1.09001 * 112.85052 * 132.68570 * 15 13 11 43 43 H 1.09000 * 113.61439 * 203.67345 * 16 15 13 44 44 H 1.09001 * 113.61670 * 334.57412 * 16 15 13 45 45 H 1.09004 * 113.68844 * 139.99285 * 17 16 15 46 46 H 0.97002 * 119.99995 * 7.86736 * 18 17 16 47 47 H 0.97002 * 119.99941 * 180.02562 * 22 21 19 48 48 H 1.09010 * 113.61633 * 25.34952 * 27 15 13 49 49 H 1.08996 * 113.61480 * 156.25154 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7355 -1.7673 1.2146 6 7 1.4757 -0.0878 2.4435 7 16 0.1348 -0.7346 3.1688 8 6 0.7116 -2.3061 3.8674 9 8 -0.1815 0.1854 4.2045 10 8 -0.7665 -0.9672 2.0950 11 6 3.5439 -0.6373 1.2990 12 8 4.1774 -0.4939 0.2749 13 7 4.1847 -0.7215 2.4817 14 6 3.4337 -1.0293 3.7014 15 6 5.6321 -0.5052 2.5476 16 6 6.4534 -1.8048 2.5086 17 6 6.4492 -1.6689 0.9769 18 7 5.3024 -2.3146 0.3335 19 6 5.2495 -2.4146 -1.0312 20 1 6.0823 -2.0765 -1.6300 21 6 4.1256 -2.9504 -1.6449 22 7 4.0297 -2.9505 -2.9576 23 14 2.7494 -3.6713 -0.6078 24 1 1.6993 -2.6432 -0.3951 25 1 2.1620 -4.8413 -1.3089 26 1 3.2930 -4.1028 0.7052 27 6 6.2653 -0.1571 1.1902 28 1 -0.3633 0.4498 0.9241 29 1 -0.3634 0.5753 -0.8515 30 1 -0.3634 -1.0251 -0.0724 31 1 1.8933 -0.5139 -0.8900 32 1 3.1263 1.4438 -0.0907 33 1 1.6045 1.9818 -0.8410 34 1 1.7527 1.9294 0.9319 35 1 1.8875 0.7107 2.8095 36 1 1.5094 -2.1138 4.5848 37 1 -0.1163 -2.8062 4.3697 38 1 1.0885 -2.9429 3.0671 39 1 3.0053 -0.1121 4.1055 40 1 2.6339 -1.7319 3.4681 41 1 4.1034 -1.4727 4.4383 42 1 5.9229 0.1711 3.3514 43 1 7.4441 -1.7087 2.9528 44 1 5.9087 -2.6766 2.8711 45 1 7.3991 -1.9319 0.5113 46 1 4.5804 -2.6714 0.8742 47 1 3.2441 -3.3245 -3.3864 48 1 5.5688 0.3013 0.4881 49 1 7.2046 0.3895 1.2739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284799089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:13 Heat of formation + Delta-G solvation = 31.900467 kcal Electronic energy + Delta-G solvation = -33519.485285 eV Core-core repulsion = 29421.632670 eV Total energy + Delta-G solvation = -4097.852615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.92024 -38.22174 -37.24105 -36.21690 -35.84703 -34.89015 -33.10816 -32.10472 -30.35504 -30.04098 -27.38622 -26.73973 -26.30125 -24.99138 -24.47284 -22.45695 -20.57047 -19.73994 -19.39195 -18.50946 -18.03483 -17.50761 -16.82273 -16.68966 -16.00709 -15.63463 -15.39084 -15.10468 -14.81570 -14.48014 -14.11752 -14.01857 -13.79048 -13.51201 -13.42263 -13.14206 -12.72550 -12.69451 -12.32480 -12.27096 -12.17709 -12.12947 -11.99582 -11.91787 -11.62890 -11.51455 -11.43972 -11.26542 -10.91554 -10.87838 -10.70503 -10.44037 -10.34939 -10.30797 -10.02482 -9.70386 -9.54654 -9.47069 -8.66333 -8.28335 -7.96321 -6.93736 -5.62570 -2.91703 0.03682 2.43282 3.14672 3.19146 3.23218 3.29525 3.43826 3.56632 3.96627 4.42914 4.54566 4.64417 4.70064 4.86251 4.95610 5.02413 5.08896 5.18981 5.25349 5.32524 5.37928 5.40732 5.49022 5.56146 5.66297 5.69027 5.85334 5.88648 6.00349 6.04581 6.12382 6.15788 6.29034 6.33055 6.41324 6.55727 6.63878 6.73723 6.76728 6.85214 6.92785 6.94206 7.41524 7.76445 8.13280 8.56081 8.80297 9.33685 10.06916 10.26898 11.57569 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006510 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.818673 B = 4300.178293 C = 5216.509866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.139 3.861 5 H 0.100 0.900 6 N -1.108 6.108 7 S 2.596 3.404 8 C -0.691 4.691 9 O -0.959 6.959 10 O -0.935 6.935 11 C 0.476 3.524 12 O -0.401 6.401 13 N -0.607 5.607 14 C 0.071 3.929 15 C 0.127 3.873 16 C -0.172 4.172 17 C 0.179 3.821 18 N -0.715 5.715 19 C -0.201 4.201 20 H 0.087 0.913 21 C 0.008 3.992 22 N -0.937 5.937 23 Si 0.848 3.152 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.286 1.286 27 C -0.199 4.199 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.421 0.579 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.355 0.645 47 H 0.255 0.745 48 H 0.134 0.866 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 5.218 17.150 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.201 4.201 4 C 0.029 3.971 5 H 0.118 0.882 6 N -0.870 5.870 7 S 2.688 3.312 8 C -0.839 4.839 9 O -0.949 6.949 10 O -0.925 6.925 11 C 0.259 3.741 12 O -0.267 6.267 13 N -0.345 5.345 14 C -0.073 4.073 15 C 0.023 3.977 16 C -0.212 4.212 17 C 0.069 3.931 18 N -0.356 5.356 19 C -0.331 4.331 20 H 0.105 0.895 21 C -0.186 4.186 22 N -0.587 5.587 23 Si 0.680 3.320 24 H -0.191 1.191 25 H -0.222 1.222 26 H -0.213 1.213 27 C -0.239 4.239 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.257 0.743 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.188 0.812 47 H 0.065 0.935 48 H 0.151 0.849 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.578 5.506 16.232 17.741 hybrid contribution -0.389 -1.041 1.309 1.717 sum -4.968 4.465 17.541 18.770 Atomic orbital electron populations 1.22104 0.93545 1.02792 1.01467 1.21330 0.96398 0.96915 0.96838 1.21831 1.02358 0.95217 1.00701 1.21399 0.91913 0.97983 0.85789 0.88237 1.55799 1.50968 1.40865 1.39392 1.05279 0.74452 0.76889 0.74606 1.30853 1.13901 1.24828 1.14344 1.93616 1.82468 1.59745 1.59070 1.93766 1.61653 1.86057 1.51020 1.20457 0.88756 0.80968 0.83909 1.90881 1.63907 1.39751 1.32131 1.47186 1.07002 1.73312 1.06985 1.22278 0.96977 1.00076 0.87986 1.21889 0.79036 0.96835 0.99950 1.23849 0.99778 0.97838 0.99719 1.20893 0.91451 0.91362 0.89433 1.42539 1.21066 1.67718 1.04316 1.18875 1.01529 1.31942 0.80711 0.89507 1.24427 0.96730 1.02580 0.94826 1.69668 1.29666 1.52350 1.07031 0.87205 0.84922 0.79823 0.80078 1.19134 1.22187 1.21315 1.24707 1.00343 1.02350 0.96507 0.91854 0.93380 0.91769 0.88081 0.91351 0.92775 0.93680 0.74254 0.84469 0.84916 0.85162 0.92853 0.92004 0.91292 0.90809 0.89630 0.92050 0.92866 0.81181 0.93467 0.84936 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.46 37.16 0.28 -1.99 16 2 C -0.09 -1.60 2.00 -90.62 -0.18 -1.78 16 3 C -0.14 -2.18 8.69 37.15 0.32 -1.86 16 4 C 0.14 2.14 1.12 -69.08 -0.08 2.07 16 5 H 0.10 1.60 4.86 -51.93 -0.25 1.35 16 6 N -1.11 -12.76 1.84 -5.88 -0.01 -12.77 16 7 S 2.60 28.62 5.67 -107.50 -0.61 28.01 16 8 C -0.69 -5.42 9.04 101.05 0.91 -4.51 16 9 O -0.96 -12.37 18.08 -57.54 -1.04 -13.41 16 10 O -0.94 -13.27 12.89 -57.54 -0.74 -14.01 16 11 C 0.48 7.97 3.95 -10.99 -0.04 7.92 16 12 O -0.40 -8.24 6.45 5.56 0.04 -8.21 16 13 N -0.61 -8.36 2.82 -173.00 -0.49 -8.85 16 14 C 0.07 0.69 8.00 59.85 0.48 1.17 16 15 C 0.13 1.75 4.52 -67.12 -0.30 1.45 16 16 C -0.17 -2.49 7.58 -25.92 -0.20 -2.69 16 17 C 0.18 3.40 4.53 -67.12 -0.30 3.09 16 18 N -0.71 -16.28 2.74 -52.64 -0.14 -16.43 16 19 C -0.20 -5.53 8.86 -15.06 -0.13 -5.67 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.24 5.49 -17.43 -0.10 0.15 16 22 N -0.94 -29.27 13.97 55.49 0.78 -28.50 16 23 Si 0.85 20.72 25.38 -169.99 -4.31 16.40 16 24 H -0.26 -5.86 4.36 56.52 0.25 -5.62 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.29 -6.60 6.44 56.52 0.36 -6.24 16 27 C -0.20 -3.34 7.12 -25.92 -0.18 -3.53 16 28 H 0.06 0.95 5.19 -51.93 -0.27 0.68 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.10 7.29 -51.93 -0.38 0.73 16 31 H 0.10 2.09 7.42 -51.93 -0.39 1.71 16 32 H 0.07 1.15 6.31 -51.92 -0.33 0.82 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 35 H 0.42 4.09 7.16 -34.47 -0.25 3.84 16 36 H 0.14 0.80 6.16 -51.92 -0.32 0.48 16 37 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 1.09 7.48 -51.93 -0.39 0.70 16 39 H 0.05 0.41 6.65 -51.93 -0.35 0.06 16 40 H 0.06 0.57 2.78 -51.93 -0.14 0.43 16 41 H 0.07 0.56 8.03 -51.93 -0.42 0.15 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.35 7.96 4.04 -40.82 -0.16 7.80 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.13 2.64 4.83 -56.18 -0.27 2.37 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -34.97 353.11 -8.17 -43.14 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -7.42 Total: 15.47 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.47 Total: -6.18 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.13 Total: -66.54 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.75 Total: -35.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.31 Total: 16.40 kcal Atomic # 16 Polarization: 28.62 SS G_CDS: -0.61 Total: 28.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.97 -8.17 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284799089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.040 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds