Wall clock time and date at job start Wed Apr 1 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47032 * 2 1 4 4 C 1.53000 * 109.47032 * 120.00308 * 2 1 3 5 5 H 1.08997 * 109.47221 * 63.93963 * 4 2 1 6 6 N 1.46502 * 109.47228 * 303.94102 * 4 2 1 7 7 S 1.65602 * 120.00049 * 97.39732 * 6 4 2 8 8 C 1.81399 * 104.44929 * 68.45681 * 7 6 4 9 9 O 1.42098 * 104.27584 * 184.52933 * 7 6 4 10 10 O 1.42106 * 104.27676 * 312.38616 * 7 6 4 11 11 C 1.50702 * 109.47107 * 183.93970 * 4 2 1 12 12 O 1.21278 * 120.00019 * 334.63433 * 11 4 2 13 13 N 1.34774 * 119.99881 * 154.62431 * 11 4 2 14 14 C 1.46507 * 120.00065 * 6.16948 * 13 11 4 15 15 C 1.46502 * 120.00129 * 186.16807 * 13 11 4 16 16 C 1.53781 * 113.68945 * 263.95119 * 15 13 11 17 17 C 1.53780 * 87.08138 * 89.12262 * 16 15 13 18 18 N 1.46494 * 113.61733 * 270.88063 * 17 16 15 19 19 C 1.36941 * 120.00276 * 187.86217 * 18 17 16 20 20 H 1.07999 * 119.99613 * 4.04121 * 19 18 17 21 21 C 1.38810 * 120.00112 * 184.04212 * 19 18 17 22 22 N 1.31617 * 119.99876 * 174.66415 * 21 19 18 23 23 Si 1.86797 * 120.00143 * 354.66385 * 21 19 18 24 24 H 1.48496 * 109.47219 * 95.29391 * 23 21 19 25 25 H 1.48507 * 109.47345 * 215.29645 * 23 21 19 26 26 H 1.48507 * 109.46975 * 335.29253 * 23 21 19 27 27 C 1.53776 * 113.61318 * 1.48314 * 15 13 11 28 28 H 1.09004 * 109.46981 * 295.95423 * 1 2 3 29 29 H 1.09001 * 109.47319 * 55.95520 * 1 2 3 30 30 H 1.08997 * 109.47572 * 175.95859 * 1 2 3 31 31 H 1.09004 * 109.46672 * 240.00069 * 2 1 3 32 32 H 1.09009 * 109.46938 * 185.06468 * 3 2 1 33 33 H 1.08990 * 109.47569 * 305.06527 * 3 2 1 34 34 H 1.09003 * 109.47221 * 65.07074 * 3 2 1 35 35 H 0.97002 * 119.99903 * 277.40369 * 6 4 2 36 36 H 1.08999 * 109.47183 * 59.99860 * 8 7 6 37 37 H 1.08992 * 109.47584 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.46985 * 300.00328 * 8 7 6 39 39 H 1.08996 * 109.47152 * 275.68079 * 14 13 11 40 40 H 1.08994 * 109.46861 * 35.68234 * 14 13 11 41 41 H 1.08999 * 109.47225 * 155.68328 * 14 13 11 42 42 H 1.09001 * 112.85052 * 132.68570 * 15 13 11 43 43 H 1.09000 * 113.61439 * 203.67345 * 16 15 13 44 44 H 1.09001 * 113.61670 * 334.57412 * 16 15 13 45 45 H 1.09004 * 113.68844 * 139.99285 * 17 16 15 46 46 H 0.97002 * 119.99995 * 7.86736 * 18 17 16 47 47 H 0.97002 * 119.99941 * 180.02562 * 22 21 19 48 48 H 1.09010 * 113.61633 * 25.34952 * 27 15 13 49 49 H 1.08996 * 113.61480 * 156.25154 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7355 -1.7673 1.2146 6 7 1.4757 -0.0878 2.4435 7 16 0.1348 -0.7346 3.1688 8 6 0.7116 -2.3061 3.8674 9 8 -0.1815 0.1854 4.2045 10 8 -0.7665 -0.9672 2.0950 11 6 3.5439 -0.6373 1.2990 12 8 4.1774 -0.4939 0.2749 13 7 4.1847 -0.7215 2.4817 14 6 3.4337 -1.0293 3.7014 15 6 5.6321 -0.5052 2.5476 16 6 6.4534 -1.8048 2.5086 17 6 6.4492 -1.6689 0.9769 18 7 5.3024 -2.3146 0.3335 19 6 5.2495 -2.4146 -1.0312 20 1 6.0823 -2.0765 -1.6300 21 6 4.1256 -2.9504 -1.6449 22 7 4.0297 -2.9505 -2.9576 23 14 2.7494 -3.6713 -0.6078 24 1 1.6993 -2.6432 -0.3951 25 1 2.1620 -4.8413 -1.3089 26 1 3.2930 -4.1028 0.7052 27 6 6.2653 -0.1571 1.1902 28 1 -0.3633 0.4498 0.9241 29 1 -0.3634 0.5753 -0.8515 30 1 -0.3634 -1.0251 -0.0724 31 1 1.8933 -0.5139 -0.8900 32 1 3.1263 1.4438 -0.0907 33 1 1.6045 1.9818 -0.8410 34 1 1.7527 1.9294 0.9319 35 1 1.8875 0.7107 2.8095 36 1 1.5094 -2.1138 4.5848 37 1 -0.1163 -2.8062 4.3697 38 1 1.0885 -2.9429 3.0671 39 1 3.0053 -0.1121 4.1055 40 1 2.6339 -1.7319 3.4681 41 1 4.1034 -1.4727 4.4383 42 1 5.9229 0.1711 3.3514 43 1 7.4441 -1.7087 2.9528 44 1 5.9087 -2.6766 2.8711 45 1 7.3991 -1.9319 0.5113 46 1 4.5804 -2.6714 0.8742 47 1 3.2441 -3.3245 -3.3864 48 1 5.5688 0.3013 0.4881 49 1 7.2046 0.3895 1.2739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284799089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:12 Heat of formation + Delta-G solvation = 3.586354 kcal Electronic energy + Delta-G solvation = -33520.713077 eV Core-core repulsion = 29421.632670 eV Total energy + Delta-G solvation = -4099.080407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.15652 -39.44971 -38.21310 -37.26088 -36.97120 -36.19708 -34.86887 -33.32539 -32.24365 -30.75133 -28.52245 -27.99353 -27.30697 -26.26386 -26.04050 -24.10209 -21.90323 -20.86504 -20.48330 -19.88248 -19.43281 -18.90080 -17.94763 -17.61592 -17.09353 -16.81461 -16.52910 -16.46591 -16.32814 -15.61003 -15.48615 -15.35849 -14.85369 -14.71234 -14.63032 -14.18604 -14.04079 -13.75913 -13.69785 -13.43070 -13.41366 -13.26520 -13.12380 -12.98237 -12.85331 -12.71396 -12.68391 -12.45135 -12.34655 -12.20793 -12.16125 -12.02595 -11.81155 -11.72916 -11.54264 -11.31090 -11.02725 -10.67682 -10.54244 -9.58496 -9.15549 -8.83130 -7.85343 -5.09662 -0.77956 1.20064 1.34684 1.42528 1.49452 2.01609 2.12144 2.56983 2.76397 3.17794 3.41922 3.47177 3.67936 3.75994 3.78442 3.90232 3.94468 4.01205 4.02620 4.19505 4.26697 4.38532 4.42529 4.47134 4.60399 4.68056 4.72014 4.80739 4.84607 4.90169 4.94168 5.00952 5.03331 5.08073 5.12365 5.20037 5.28148 5.43800 5.56591 5.59002 5.64966 5.89885 5.95135 6.16689 6.37620 6.64558 7.26468 7.60378 8.03706 8.22123 9.38646 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006510 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.818673 B = 4300.178293 C = 5216.509866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.135 4.135 4 C 0.147 3.853 5 H 0.095 0.905 6 N -1.100 6.100 7 S 2.599 3.401 8 C -0.677 4.677 9 O -0.977 6.977 10 O -0.974 6.974 11 C 0.473 3.527 12 O -0.452 6.452 13 N -0.604 5.604 14 C 0.052 3.948 15 C 0.139 3.861 16 C -0.147 4.147 17 C 0.146 3.854 18 N -0.710 5.710 19 C -0.174 4.174 20 H 0.039 0.961 21 C -0.062 4.062 22 N -0.994 5.994 23 Si 0.910 3.090 24 H -0.239 1.239 25 H -0.314 1.314 26 H -0.256 1.256 27 C -0.200 4.200 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.430 0.570 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.360 0.640 47 H 0.248 0.752 48 H 0.101 0.899 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 5.242 22.634 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.193 4.193 4 C 0.036 3.964 5 H 0.113 0.887 6 N -0.862 5.862 7 S 2.695 3.305 8 C -0.830 4.830 9 O -0.967 6.967 10 O -0.964 6.964 11 C 0.257 3.743 12 O -0.321 6.321 13 N -0.340 5.340 14 C -0.090 4.090 15 C 0.035 3.965 16 C -0.187 4.187 17 C 0.037 3.963 18 N -0.352 5.352 19 C -0.305 4.305 20 H 0.058 0.942 21 C -0.251 4.251 22 N -0.648 5.648 23 Si 0.739 3.261 24 H -0.164 1.164 25 H -0.243 1.243 26 H -0.181 1.181 27 C -0.239 4.239 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.194 0.806 47 H 0.056 0.944 48 H 0.119 0.881 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.006 5.602 21.826 23.082 hybrid contribution -0.109 -0.991 -0.373 1.064 sum -5.115 4.611 21.452 22.531 Atomic orbital electron populations 1.22079 0.92853 1.02152 1.02324 1.21238 0.96858 0.97545 0.96110 1.21737 1.00933 0.94542 1.02060 1.21032 0.91418 0.97626 0.86319 0.88735 1.55626 1.50687 1.41603 1.38283 1.05018 0.73797 0.77808 0.73854 1.30727 1.15869 1.21402 1.14995 1.93599 1.82682 1.61465 1.58985 1.93715 1.63061 1.86801 1.52785 1.20694 0.89143 0.80189 0.84266 1.90917 1.64890 1.42265 1.34073 1.47286 1.07250 1.72061 1.07422 1.22713 0.97640 1.01942 0.86668 1.21895 0.78906 0.96903 0.98755 1.23746 1.01780 0.98241 0.94883 1.21291 0.89125 0.93043 0.92859 1.42321 1.22380 1.68286 1.02232 1.18669 0.99520 1.29466 0.82888 0.94249 1.25128 0.99798 1.04271 0.95934 1.69898 1.30518 1.54802 1.09559 0.86210 0.82103 0.78555 0.79261 1.16434 1.24263 1.18084 1.24513 1.00956 1.00123 0.98323 0.90395 0.93249 0.93079 0.92869 0.93314 0.92821 0.91057 0.73198 0.81601 0.82251 0.84898 0.90192 0.91474 0.88450 0.86584 0.86370 0.91743 0.95011 0.80646 0.94353 0.88116 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 7.46 71.98 0.54 -3.83 16 2 C -0.10 -3.31 2.00 -10.79 -0.02 -3.33 16 3 C -0.14 -4.14 8.69 71.98 0.63 -3.52 16 4 C 0.15 4.29 1.12 44.25 0.05 4.34 16 5 H 0.10 2.84 4.86 -2.39 -0.01 2.83 16 6 N -1.10 -21.88 1.84 -172.52 -0.32 -22.20 16 7 S 2.60 48.54 5.67 -56.49 -0.32 48.22 16 8 C -0.68 -6.99 9.04 113.37 1.02 -5.96 16 9 O -0.98 -21.81 18.08 -127.65 -2.31 -24.12 16 10 O -0.97 -25.72 12.89 -127.65 -1.65 -27.36 16 11 C 0.47 15.09 3.95 87.66 0.35 15.44 16 12 O -0.45 -18.93 6.45 -3.02 -0.02 -18.95 16 13 N -0.60 -14.22 2.82 -819.65 -2.31 -16.53 16 14 C 0.05 0.71 8.00 127.77 1.02 1.73 16 15 C 0.14 3.24 4.52 45.52 0.21 3.44 16 16 C -0.15 -3.63 7.58 31.12 0.24 -3.39 16 17 C 0.15 5.42 4.53 45.52 0.21 5.63 16 18 N -0.71 -32.48 2.74 -320.46 -0.88 -33.36 16 19 C -0.17 -10.09 8.86 84.03 0.74 -9.35 16 20 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 21 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 22 N -0.99 -66.16 13.97 21.65 0.30 -65.86 16 23 Si 0.91 43.98 25.38 68.60 1.74 45.73 16 24 H -0.24 -10.44 4.36 99.48 0.43 -10.01 16 25 H -0.31 -16.14 7.11 99.48 0.71 -15.44 16 26 H -0.26 -10.88 6.44 99.48 0.64 -10.24 16 27 C -0.20 -6.45 7.12 31.12 0.22 -6.23 16 28 H 0.08 2.25 5.19 -2.38 -0.01 2.24 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.75 7.29 -2.39 -0.02 1.73 16 31 H 0.05 2.33 7.42 -2.38 -0.02 2.31 16 32 H 0.05 1.69 6.31 -2.38 -0.02 1.67 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.75 7.30 -2.39 -0.02 1.73 16 35 H 0.43 6.76 7.16 -96.74 -0.69 6.06 16 36 H 0.17 0.81 6.16 -2.39 -0.01 0.79 16 37 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.13 1.51 7.48 -2.39 -0.02 1.49 16 39 H 0.08 0.71 6.65 -2.39 -0.02 0.69 16 40 H 0.07 0.85 2.78 -2.39 -0.01 0.84 16 41 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 42 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.36 15.61 4.04 -92.71 -0.37 15.23 16 47 H 0.25 15.94 8.31 -92.71 -0.77 15.16 16 48 H 0.10 4.11 4.83 -69.76 -0.34 3.77 16 49 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -84.57 353.11 -0.83 -85.40 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.74 Total: 37.33 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.66 Total: -8.29 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -3.20 Total: -137.95 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -3.97 Total: -70.43 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.74 Total: 45.73 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.32 Total: 48.22 kcal Total: -84.57 -0.83 -85.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284799089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.986 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds