Wall clock time and date at job start Wed Apr 1 2020 04:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46696 * 2 1 4 4 C 1.53005 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46930 * 305.00421 * 4 3 2 6 6 C 1.50700 * 109.47503 * 184.99915 * 4 3 2 7 7 O 1.21279 * 119.99684 * 325.09800 * 6 4 3 8 8 N 1.34775 * 119.99845 * 145.09547 * 6 4 3 9 9 C 1.46927 * 120.62731 * 185.01966 * 8 6 4 10 10 C 1.52761 * 109.00778 * 233.58219 * 9 8 6 11 11 C 1.53040 * 109.38072 * 305.58865 * 10 9 8 12 12 C 1.53047 * 109.53712 * 61.24047 * 11 10 9 13 13 H 1.08997 * 109.52473 * 58.60212 * 12 11 10 14 14 C 1.53000 * 109.49538 * 178.68027 * 12 11 10 15 15 N 1.46496 * 109.47265 * 294.84019 * 14 12 11 16 16 C 1.36945 * 120.00033 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00109 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00248 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00037 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47244 * 59.99713 * 20 18 16 22 22 H 1.48508 * 109.47020 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47006 * 299.99564 * 20 18 16 24 24 C 1.46926 * 120.63077 * 5.29367 * 8 6 4 25 25 S 1.81399 * 109.46754 * 65.00033 * 4 3 2 26 26 N 1.65602 * 104.44998 * 59.99923 * 25 4 3 27 27 O 1.42098 * 110.54662 * 171.62749 * 25 4 3 28 28 O 1.42108 * 110.54398 * 308.37937 * 25 4 3 29 29 H 1.08996 * 109.46922 * 60.00048 * 1 2 3 30 30 H 1.09004 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47389 * 299.99671 * 1 2 3 32 32 H 1.08994 * 109.46915 * 239.99889 * 2 1 3 33 33 H 1.08996 * 109.46922 * 119.99952 * 2 1 3 34 34 H 1.08996 * 109.47395 * 299.99662 * 3 2 1 35 35 H 1.09004 * 109.47445 * 60.00102 * 3 2 1 36 36 H 1.09003 * 109.58532 * 353.41423 * 9 8 6 37 37 H 1.09003 * 109.58618 * 113.84174 * 9 8 6 38 38 H 1.08999 * 109.56766 * 185.55271 * 10 9 8 39 39 H 1.08999 * 109.38557 * 65.51440 * 10 9 8 40 40 H 1.08994 * 109.46030 * 301.21778 * 11 10 9 41 41 H 1.09002 * 109.45797 * 181.25972 * 11 10 9 42 42 H 1.09004 * 109.46846 * 54.83920 * 14 12 11 43 43 H 1.08996 * 109.47353 * 174.83722 * 14 12 11 44 44 H 0.96998 * 120.00332 * 359.97438 * 15 14 12 45 45 H 0.96998 * 120.00705 * 179.97438 * 19 18 16 46 46 H 1.08990 * 109.58592 * 246.15560 * 24 8 6 47 47 H 1.08991 * 109.58691 * 6.58532 * 24 8 6 48 48 H 0.96995 * 120.00212 * 0.02562 * 26 25 4 49 49 H 0.96999 * 119.99829 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0723 2.8581 0.1245 7 8 3.4624 3.7659 -0.3998 8 7 5.1991 3.1150 0.8178 9 6 5.6419 4.4981 1.0405 10 6 7.0871 4.6403 0.5661 11 6 7.9539 3.5837 1.2549 12 6 7.4550 2.1870 0.8774 13 1 7.4932 2.0667 -0.2052 14 6 8.3424 1.1314 1.5400 15 7 9.6973 1.2169 0.9894 16 6 10.6722 0.3642 1.4341 17 1 10.4421 -0.3716 2.1904 18 6 11.9558 0.4449 0.9120 19 7 12.2359 1.3406 -0.0108 20 14 13.2855 -0.7187 1.5181 21 1 12.8764 -2.1208 1.2495 22 1 14.5573 -0.4300 0.8078 23 1 13.4797 -0.5309 2.9782 24 6 6.0111 2.0172 1.3601 25 16 4.1753 0.7197 -1.5490 26 7 3.5574 1.7005 -2.7317 27 8 5.5827 0.8820 -1.6589 28 8 3.5627 -0.5409 -1.7839 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 5.0053 5.1808 0.4776 37 1 5.5842 4.7337 2.1032 38 1 7.4574 5.6344 0.8166 39 1 7.1291 4.4979 -0.5137 40 1 7.8923 3.7116 2.3355 41 1 8.9894 3.6984 0.9343 42 1 8.3754 1.3075 2.6153 43 1 7.9336 0.1397 1.3467 44 1 9.9036 1.8770 0.3093 45 1 13.1329 1.3973 -0.3754 46 1 5.9841 2.0463 2.4493 47 1 5.6179 1.0635 1.0082 48 1 3.0066 2.4619 -2.4915 49 1 3.7464 1.5136 -3.6645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317153936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:43 Heat of formation + Delta-G solvation = -104.602260 kcal Electronic energy + Delta-G solvation = -30667.756208 eV Core-core repulsion = 26563.984390 eV Total energy + Delta-G solvation = -4103.771818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.67376 -38.07810 -37.48572 -36.20422 -35.81052 -34.88429 -33.33467 -32.98691 -32.19696 -30.83064 -29.85329 -26.23417 -25.50869 -24.71732 -22.84440 -21.94038 -21.69829 -20.28186 -19.80622 -19.24941 -18.39499 -17.80878 -17.20357 -16.95519 -16.44196 -16.03538 -15.80375 -15.12718 -14.83015 -14.59254 -14.36063 -14.30912 -14.17568 -13.84271 -13.68530 -13.26668 -13.06806 -12.86851 -12.73950 -12.55683 -12.41832 -12.36196 -12.29015 -12.18882 -11.99594 -11.69821 -11.36856 -11.26656 -11.02078 -10.88301 -10.78779 -10.71779 -10.60734 -10.53041 -10.32800 -10.27160 -10.06157 -9.95520 -9.67206 -8.85539 -8.78436 -6.87737 -5.72339 -3.00816 -0.20252 2.16406 2.41527 2.69034 3.28488 3.46622 3.50789 3.51938 3.58787 3.88594 4.36414 4.49480 4.60719 4.67414 4.70955 4.82712 4.97505 5.04943 5.06947 5.12346 5.23826 5.31798 5.40781 5.44240 5.46960 5.51312 5.62030 5.66106 5.74608 5.82187 5.87534 5.90184 5.92419 6.03358 6.09512 6.20853 6.24485 6.36423 6.48031 6.67095 6.78867 6.86398 6.94116 7.05534 7.67672 7.72635 8.46492 9.57584 10.15893 10.50605 11.50523 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003105 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.723994 B = 9015.311740 C = 9917.389241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C -0.084 4.084 4 C -0.625 4.625 5 H 0.164 0.836 6 C 0.537 3.463 7 O -0.531 6.531 8 N -0.591 5.591 9 C 0.112 3.888 10 C -0.137 4.137 11 C -0.112 4.112 12 C -0.112 4.112 13 H 0.093 0.907 14 C 0.161 3.839 15 N -0.729 5.729 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.110 3.890 25 S 2.623 3.377 26 N -1.245 6.245 27 O -0.932 6.932 28 O -0.946 6.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.418 0.582 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 4.134 0.046 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.208 4.208 3 C -0.123 4.123 4 C -0.734 4.734 5 H 0.182 0.818 6 C 0.322 3.678 7 O -0.409 6.409 8 N -0.322 5.322 9 C -0.010 4.010 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.132 4.132 13 H 0.111 0.889 14 C 0.032 3.968 15 N -0.373 5.373 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.013 4.013 25 S 2.709 3.291 26 N -0.922 5.922 27 O -0.921 6.921 28 O -0.934 6.934 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.247 0.753 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -24.000 3.606 -0.085 24.270 hybrid contribution 0.496 0.145 0.391 0.648 sum -23.504 3.751 0.306 23.804 Atomic orbital electron populations 1.21688 0.94847 1.02098 1.01822 1.22268 0.97467 0.95331 1.05731 1.21280 0.86402 0.99152 1.05423 1.30766 1.09605 1.06991 1.25993 0.81843 1.19082 0.81038 0.88136 0.79536 1.90700 1.57419 1.45552 1.47228 1.48065 1.22863 1.08648 1.52641 1.21669 0.96500 0.81517 1.01315 1.21896 0.93901 1.00077 1.01636 1.21549 1.00501 0.92944 0.99942 1.21746 0.92053 0.96447 1.02937 0.88864 1.20575 0.86318 0.94586 0.95292 1.42309 1.04525 1.42276 1.48205 1.19176 0.89526 1.10941 1.17415 0.91269 1.24732 0.97581 0.99383 0.99278 1.69649 1.20389 1.36992 1.31127 0.86268 0.81447 0.80544 0.77910 1.21284 1.21731 1.21347 1.21932 0.92091 0.88309 0.98990 1.04805 0.74676 0.74218 0.75374 1.53013 1.70895 1.46543 1.21769 1.93721 1.28960 1.85501 1.83869 1.93557 1.77287 1.39876 1.82725 0.92492 0.92190 0.92831 0.87419 0.91154 0.89825 0.89479 0.88930 0.91043 0.90578 0.91198 0.92074 0.89932 0.96274 0.96293 0.78070 0.93486 0.90242 0.90998 0.75328 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.17 -1.36 5.65 -26.73 -0.15 -1.51 16 3 C -0.08 -0.67 4.21 -26.73 -0.11 -0.78 16 4 C -0.62 -5.97 1.93 -27.88 -0.05 -6.02 16 5 H 0.16 1.23 6.17 -51.93 -0.32 0.91 16 6 C 0.54 6.28 6.45 -10.99 -0.07 6.21 16 7 O -0.53 -6.88 14.92 5.56 0.08 -6.80 16 8 N -0.59 -7.06 2.98 -173.04 -0.52 -7.58 16 9 C 0.11 1.25 6.41 -3.93 -0.03 1.22 16 10 C -0.14 -1.69 6.06 -26.83 -0.16 -1.85 16 11 C -0.11 -1.67 5.06 -26.69 -0.13 -1.80 16 12 C -0.11 -1.82 2.37 -90.50 -0.21 -2.03 16 13 H 0.09 1.74 7.96 -51.93 -0.41 1.33 16 14 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 15 N -0.73 -18.53 5.32 -59.91 -0.32 -18.85 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.11 1.36 5.44 -3.71 -0.02 1.34 16 25 S 2.62 30.21 5.43 -107.50 -0.58 29.62 16 26 N -1.25 -11.19 9.13 60.35 0.55 -10.64 16 27 O -0.93 -14.62 17.63 -57.54 -1.01 -15.63 16 28 O -0.95 -12.26 14.89 -57.54 -0.86 -13.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.11 1.02 4.90 -51.93 -0.25 0.77 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.60 6.96 -51.93 -0.36 0.24 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.47 7.16 -51.93 -0.37 1.09 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.39 10.33 6.86 -40.82 -0.28 10.04 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.80 5.39 -51.93 -0.28 0.52 16 48 H 0.42 3.29 6.96 -34.47 -0.24 3.05 16 49 H 0.42 3.12 8.96 -34.47 -0.31 2.81 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -35.61 391.05 -9.72 -45.33 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.81 Total: 12.01 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.85 Total: -10.07 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.44 Total: -64.81 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.79 Total: -35.54 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 30.21 SS G_CDS: -0.58 Total: 29.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.61 -9.72 -45.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317153936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.272 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds