Wall clock time and date at job start Wed Apr 1 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52694 * 2 1 4 4 N 1.46497 * 109.47138 * 59.91543 * 3 2 1 5 5 C 1.34778 * 119.99846 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99857 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47149 * 180.02562 * 7 5 4 9 9 N 1.46498 * 109.47510 * 180.02562 * 8 7 5 10 10 S 1.65600 * 120.00290 * 164.99811 * 9 8 7 11 11 C 1.81409 * 104.44536 * 65.00277 * 10 9 8 12 12 O 1.42102 * 104.27689 * 181.07302 * 10 9 8 13 13 O 1.42098 * 104.27792 * 308.93709 * 10 9 8 14 14 C 1.53037 * 109.49788 * 239.91577 * 2 1 3 15 15 C 1.53043 * 109.53867 * 301.41585 * 14 2 1 16 16 C 1.53189 * 109.31285 * 298.63220 * 15 14 2 17 17 N 1.46926 * 108.77102 * 54.63405 * 16 15 14 18 18 C 1.36943 * 120.62897 * 126.37356 * 17 16 15 19 19 H 1.08003 * 119.99925 * 331.82261 * 18 17 16 20 20 C 1.38812 * 120.00214 * 151.82712 * 18 17 16 21 21 N 1.31618 * 119.99806 * 343.08278 * 20 18 17 22 22 Si 1.86805 * 119.99880 * 163.08345 * 20 18 17 23 23 H 1.48493 * 109.47197 * 90.00044 * 22 20 18 24 24 H 1.48504 * 109.46753 * 209.99972 * 22 20 18 25 25 H 1.48502 * 109.47173 * 329.99633 * 22 20 18 26 26 C 1.46923 * 118.74330 * 306.38990 * 17 16 15 27 27 H 1.08992 * 109.47627 * 180.08298 * 1 2 3 28 28 H 1.09007 * 109.47062 * 300.08790 * 1 2 3 29 29 H 1.09000 * 109.47185 * 60.07962 * 1 2 3 30 30 H 1.09001 * 109.46996 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46812 * 299.91997 * 3 2 1 32 32 H 0.96998 * 120.00380 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.47275 * 300.00332 * 7 5 4 34 34 H 1.08999 * 109.46928 * 60.00529 * 7 5 4 35 35 H 1.09007 * 109.47422 * 300.00664 * 8 7 5 36 36 H 1.08999 * 109.46873 * 60.00374 * 8 7 5 37 37 H 0.97000 * 119.99693 * 345.00553 * 9 8 7 38 38 H 1.08998 * 109.46793 * 60.00052 * 11 10 9 39 39 H 1.09004 * 109.46579 * 179.97438 * 11 10 9 40 40 H 1.08995 * 109.47006 * 299.99667 * 11 10 9 41 41 H 1.08996 * 109.46472 * 181.39327 * 14 2 1 42 42 H 1.09003 * 109.45789 * 61.43655 * 14 2 1 43 43 H 1.09001 * 109.49506 * 58.58565 * 15 14 2 44 44 H 1.08999 * 109.49946 * 178.67653 * 15 14 2 45 45 H 1.09001 * 109.58527 * 174.41952 * 16 15 14 46 46 H 1.08989 * 109.58863 * 294.84811 * 16 15 14 47 47 H 0.97001 * 119.99503 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58870 * 173.40206 * 26 17 16 49 49 H 1.09001 * 109.58409 * 293.68111 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5521 2.1337 1.1951 5 6 1.8791 3.4237 1.4084 6 8 2.5780 4.0120 0.6108 7 6 1.3752 4.1353 2.6375 8 6 1.8868 5.5773 2.6376 9 7 1.3975 6.2690 3.8327 10 16 2.0785 7.7061 4.2948 11 6 1.6678 8.8541 2.9516 12 8 1.3819 8.0582 5.4822 13 8 3.4745 7.4418 4.3153 14 6 2.0408 -0.7231 -1.2483 15 6 1.5029 -2.1558 -1.2659 16 6 2.0139 -2.9041 -0.0307 17 7 1.6515 -2.1381 1.1696 18 6 0.9631 -2.7311 2.1942 19 1 0.3008 -3.5598 1.9914 20 6 1.1163 -2.2670 3.4934 21 7 2.1426 -1.5031 3.8026 22 14 -0.1339 -2.7268 4.8030 23 1 0.2860 -3.9865 5.4678 24 1 -0.2177 -1.6393 5.8108 25 1 -1.4640 -2.9200 4.1715 26 6 2.0412 -0.7238 1.2496 27 1 -0.3634 -1.0276 0.0015 28 1 -0.3633 0.5152 0.8893 29 1 -0.3633 0.5126 -0.8907 30 1 3.1314 1.4409 0.0005 31 1 1.6797 1.9558 -0.8908 32 1 0.9934 1.6631 1.8333 33 1 0.2853 4.1368 2.6354 34 1 1.7361 3.6214 3.5285 35 1 2.9768 5.5762 2.6395 36 1 1.5255 6.0909 1.7467 37 1 0.6747 5.8852 4.3535 38 1 0.5846 8.9291 2.8563 39 1 2.0815 9.8375 3.1750 40 1 2.0902 8.4856 2.0168 41 1 3.1304 -0.7445 -1.2353 42 1 1.6987 -0.1959 -2.1389 43 1 0.4132 -2.1355 -1.2540 44 1 1.8479 -2.6629 -2.1670 45 1 1.5552 -3.8919 0.0139 46 1 3.0977 -3.0044 -0.0866 47 1 2.2498 -1.1792 4.7106 48 1 1.6007 -0.2730 2.1389 49 1 3.1273 -0.6464 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324936313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:31 Heat of formation + Delta-G solvation = -99.093526 kcal Electronic energy + Delta-G solvation = -29509.354290 eV Core-core repulsion = 25405.821349 eV Total energy + Delta-G solvation = -4103.532941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.83219 -38.43320 -37.36305 -36.23367 -35.88196 -34.78086 -33.25427 -31.59510 -30.38058 -29.87843 -29.79331 -26.62547 -25.77369 -25.32344 -23.47810 -22.19253 -20.64075 -20.25653 -19.68394 -18.17831 -17.81044 -17.05673 -16.73444 -16.63204 -16.20522 -15.84635 -15.59476 -15.02588 -14.83776 -14.35225 -14.06403 -13.95219 -13.67872 -13.58972 -13.51292 -13.35183 -13.18600 -12.80438 -12.50250 -12.39523 -12.33787 -12.25418 -12.21529 -11.89427 -11.83066 -11.57401 -11.36267 -11.30637 -11.01250 -10.89549 -10.69473 -10.45548 -10.23606 -10.15235 -9.89639 -9.82172 -9.75646 -9.54683 -9.42142 -8.76712 -8.53962 -6.71290 -5.85941 -3.28132 -0.02492 2.39250 2.77727 3.30448 3.39053 3.40227 3.42439 3.54510 3.91277 4.36136 4.42549 4.50760 4.63424 4.87537 4.93512 5.10394 5.23608 5.24295 5.27905 5.35735 5.40629 5.46790 5.54421 5.66230 5.74001 5.83182 5.92534 5.99919 6.04094 6.12419 6.21769 6.36437 6.39740 6.49968 6.57128 6.66603 6.70987 6.79128 6.83689 6.92280 7.00180 7.23730 7.52211 7.72545 7.73420 8.37184 8.38364 9.14385 9.77594 10.35279 11.21961 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002596 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.997053 B =10782.079220 C =12443.484719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.136 3.864 4 N -0.715 5.715 5 C 0.515 3.485 6 O -0.553 6.553 7 C -0.151 4.151 8 C 0.130 3.870 9 N -1.122 6.122 10 S 2.619 3.381 11 C -0.674 4.674 12 O -0.962 6.962 13 O -0.954 6.954 14 C -0.095 4.095 15 C -0.135 4.135 16 C 0.143 3.857 17 N -0.589 5.589 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.898 3.102 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.186 3.814 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.407 0.593 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.253 0.747 48 H 0.088 0.912 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 15.553 -5.714 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C 0.012 3.988 4 N -0.366 5.366 5 C 0.300 3.700 6 O -0.432 6.432 7 C -0.192 4.192 8 C 0.004 3.996 9 N -0.882 5.882 10 S 2.710 3.290 11 C -0.824 4.824 12 O -0.952 6.952 13 O -0.944 6.944 14 C -0.134 4.134 15 C -0.174 4.174 16 C 0.017 3.983 17 N -0.311 5.311 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.727 3.273 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.059 3.941 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.118 16.246 -5.443 17.414 hybrid contribution -1.486 -0.528 0.606 1.689 sum -4.603 15.717 -4.837 17.077 Atomic orbital electron populations 1.21716 0.94533 1.02658 0.99352 1.21538 0.96439 0.92748 0.99782 1.21382 0.98928 0.92020 0.86488 1.46085 1.52949 1.11562 1.26032 1.20303 0.80435 0.82204 0.87019 1.90685 1.38499 1.66530 1.47500 1.21795 1.03136 0.95734 0.98574 1.21041 1.00653 0.92025 0.85915 1.55580 1.53083 1.39832 1.39659 1.04596 0.74427 0.74583 0.75404 1.30531 1.12536 1.17869 1.21439 1.93622 1.74986 1.83436 1.43174 1.93636 1.31195 1.82974 1.86574 1.21347 0.99978 0.96010 0.96016 1.22047 1.00959 0.95723 0.98699 1.20932 0.96395 0.94242 0.86770 1.43985 1.65312 1.05586 1.16225 1.19151 1.17619 1.15402 0.85720 0.91804 1.25019 0.97003 1.00641 0.96892 1.70036 1.27262 1.38622 1.18689 0.86376 0.81446 0.77767 0.81668 1.21430 1.21561 1.20537 1.20786 0.96241 0.83786 0.93262 0.90964 0.93709 0.94576 0.91798 0.92302 0.75652 0.88198 0.87537 0.89122 0.90974 0.74719 0.85309 0.85432 0.85194 0.92554 0.93418 0.91976 0.93214 0.92949 0.96557 0.93645 0.89428 0.96430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.81 37.16 0.29 -1.70 16 2 C -0.10 -1.71 0.53 -154.39 -0.08 -1.79 16 3 C 0.14 2.10 4.57 -4.04 -0.02 2.08 16 4 N -0.71 -10.29 5.00 -60.29 -0.30 -10.59 16 5 C 0.52 7.12 7.83 -10.99 -0.09 7.03 16 6 O -0.55 -9.24 15.98 5.56 0.09 -9.15 16 7 C -0.15 -1.49 5.84 -27.88 -0.16 -1.65 16 8 C 0.13 1.19 5.42 -4.04 -0.02 1.17 16 9 N -1.12 -8.42 5.89 -10.61 -0.06 -8.48 16 10 S 2.62 21.56 6.10 -107.50 -0.66 20.90 16 11 C -0.67 -3.18 10.89 101.05 1.10 -2.08 16 12 O -0.96 -11.01 18.08 -57.54 -1.04 -12.05 16 13 O -0.95 -12.00 17.50 -57.54 -1.01 -13.01 16 14 C -0.10 -1.48 4.71 -26.69 -0.13 -1.61 16 15 C -0.14 -2.18 5.74 -26.61 -0.15 -2.33 16 16 C 0.14 2.82 6.52 -3.71 -0.02 2.80 16 17 N -0.59 -13.55 2.43 -172.32 -0.42 -13.97 16 18 C -0.25 -6.36 9.58 -15.06 -0.14 -6.50 16 19 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -24.34 11.20 55.49 0.62 -23.72 16 22 Si 0.90 20.41 29.59 -169.99 -5.03 15.38 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.19 3.94 3.72 -3.71 -0.01 3.93 16 27 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 28 H 0.04 0.69 6.86 -51.92 -0.36 0.34 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.41 5.79 6.22 -40.82 -0.25 5.54 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.99 7.65 -51.92 -0.40 0.59 16 36 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.42 2.52 8.62 -34.47 -0.30 2.22 16 38 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 46 H 0.02 0.33 8.14 -51.94 -0.42 -0.09 16 47 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 48 H 0.09 2.02 4.97 -51.93 -0.26 1.76 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -34.72 395.85 -9.44 -44.16 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.08 Total: 5.21 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.47 Total: -0.65 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.16 Total: -56.76 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.96 Total: -34.20 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: 21.56 SS G_CDS: -0.66 Total: 20.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.72 -9.44 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324936313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.930 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds