Wall clock time and date at job start Wed Apr 1 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52694 * 2 1 4 4 N 1.46497 * 109.47138 * 59.91543 * 3 2 1 5 5 C 1.34778 * 119.99846 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99857 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47149 * 180.02562 * 7 5 4 9 9 N 1.46498 * 109.47510 * 180.02562 * 8 7 5 10 10 S 1.65600 * 120.00290 * 164.99811 * 9 8 7 11 11 C 1.81409 * 104.44536 * 65.00277 * 10 9 8 12 12 O 1.42102 * 104.27689 * 181.07302 * 10 9 8 13 13 O 1.42098 * 104.27792 * 308.93709 * 10 9 8 14 14 C 1.53037 * 109.49788 * 239.91577 * 2 1 3 15 15 C 1.53043 * 109.53867 * 301.41585 * 14 2 1 16 16 C 1.53189 * 109.31285 * 298.63220 * 15 14 2 17 17 N 1.46926 * 108.77102 * 54.63405 * 16 15 14 18 18 C 1.36943 * 120.62897 * 126.37356 * 17 16 15 19 19 H 1.08003 * 119.99925 * 331.82261 * 18 17 16 20 20 C 1.38812 * 120.00214 * 151.82712 * 18 17 16 21 21 N 1.31618 * 119.99806 * 343.08278 * 20 18 17 22 22 Si 1.86805 * 119.99880 * 163.08345 * 20 18 17 23 23 H 1.48493 * 109.47197 * 90.00044 * 22 20 18 24 24 H 1.48504 * 109.46753 * 209.99972 * 22 20 18 25 25 H 1.48502 * 109.47173 * 329.99633 * 22 20 18 26 26 C 1.46923 * 118.74330 * 306.38990 * 17 16 15 27 27 H 1.08992 * 109.47627 * 180.08298 * 1 2 3 28 28 H 1.09007 * 109.47062 * 300.08790 * 1 2 3 29 29 H 1.09000 * 109.47185 * 60.07962 * 1 2 3 30 30 H 1.09001 * 109.46996 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46812 * 299.91997 * 3 2 1 32 32 H 0.96998 * 120.00380 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.47275 * 300.00332 * 7 5 4 34 34 H 1.08999 * 109.46928 * 60.00529 * 7 5 4 35 35 H 1.09007 * 109.47422 * 300.00664 * 8 7 5 36 36 H 1.08999 * 109.46873 * 60.00374 * 8 7 5 37 37 H 0.97000 * 119.99693 * 345.00553 * 9 8 7 38 38 H 1.08998 * 109.46793 * 60.00052 * 11 10 9 39 39 H 1.09004 * 109.46579 * 179.97438 * 11 10 9 40 40 H 1.08995 * 109.47006 * 299.99667 * 11 10 9 41 41 H 1.08996 * 109.46472 * 181.39327 * 14 2 1 42 42 H 1.09003 * 109.45789 * 61.43655 * 14 2 1 43 43 H 1.09001 * 109.49506 * 58.58565 * 15 14 2 44 44 H 1.08999 * 109.49946 * 178.67653 * 15 14 2 45 45 H 1.09001 * 109.58527 * 174.41952 * 16 15 14 46 46 H 1.08989 * 109.58863 * 294.84811 * 16 15 14 47 47 H 0.97001 * 119.99503 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58870 * 173.40206 * 26 17 16 49 49 H 1.09001 * 109.58409 * 293.68111 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5521 2.1337 1.1951 5 6 1.8791 3.4237 1.4084 6 8 2.5780 4.0120 0.6108 7 6 1.3752 4.1353 2.6375 8 6 1.8868 5.5773 2.6376 9 7 1.3975 6.2690 3.8327 10 16 2.0785 7.7061 4.2948 11 6 1.6678 8.8541 2.9516 12 8 1.3819 8.0582 5.4822 13 8 3.4745 7.4418 4.3153 14 6 2.0408 -0.7231 -1.2483 15 6 1.5029 -2.1558 -1.2659 16 6 2.0139 -2.9041 -0.0307 17 7 1.6515 -2.1381 1.1696 18 6 0.9631 -2.7311 2.1942 19 1 0.3008 -3.5598 1.9914 20 6 1.1163 -2.2670 3.4934 21 7 2.1426 -1.5031 3.8026 22 14 -0.1339 -2.7268 4.8030 23 1 0.2860 -3.9865 5.4678 24 1 -0.2177 -1.6393 5.8108 25 1 -1.4640 -2.9200 4.1715 26 6 2.0412 -0.7238 1.2496 27 1 -0.3634 -1.0276 0.0015 28 1 -0.3633 0.5152 0.8893 29 1 -0.3633 0.5126 -0.8907 30 1 3.1314 1.4409 0.0005 31 1 1.6797 1.9558 -0.8908 32 1 0.9934 1.6631 1.8333 33 1 0.2853 4.1368 2.6354 34 1 1.7361 3.6214 3.5285 35 1 2.9768 5.5762 2.6395 36 1 1.5255 6.0909 1.7467 37 1 0.6747 5.8852 4.3535 38 1 0.5846 8.9291 2.8563 39 1 2.0815 9.8375 3.1750 40 1 2.0902 8.4856 2.0168 41 1 3.1304 -0.7445 -1.2353 42 1 1.6987 -0.1959 -2.1389 43 1 0.4132 -2.1355 -1.2540 44 1 1.8479 -2.6629 -2.1670 45 1 1.5552 -3.8919 0.0139 46 1 3.0977 -3.0044 -0.0866 47 1 2.2498 -1.1792 4.7106 48 1 1.6007 -0.2730 2.1389 49 1 3.1273 -0.6464 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324936313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:30 Heat of formation + Delta-G solvation = -126.125048 kcal Electronic energy + Delta-G solvation = -29510.526465 eV Core-core repulsion = 25405.821349 eV Total energy + Delta-G solvation = -4104.705116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.03469 -39.80519 -38.16029 -37.02842 -36.70588 -36.16190 -34.85937 -33.03089 -31.69630 -31.11836 -30.24151 -27.94620 -27.31992 -26.87585 -24.44977 -23.76609 -22.07614 -21.32873 -20.45511 -19.53944 -18.71701 -18.48141 -17.93723 -17.38766 -17.12985 -16.91638 -16.68035 -16.54484 -15.83483 -15.58273 -15.52284 -15.32036 -14.83826 -14.80769 -14.59137 -14.30743 -13.98806 -13.94561 -13.75559 -13.70729 -13.30566 -13.19429 -13.10379 -13.05463 -12.99638 -12.73178 -12.66849 -12.54456 -12.50934 -12.25495 -12.11883 -11.93760 -11.83064 -11.69392 -11.38286 -11.21563 -10.94305 -10.82514 -10.49036 -10.41080 -9.96867 -8.59220 -7.81658 -5.26531 -0.64785 1.48414 1.52177 1.60107 1.68009 1.73314 2.39135 2.54906 2.92171 3.30882 3.31305 3.63020 3.67181 3.97710 3.99149 4.07458 4.07978 4.08853 4.15088 4.22871 4.39244 4.53500 4.54884 4.59455 4.60556 4.78011 4.80345 4.83989 4.91019 4.97253 5.02066 5.07451 5.10772 5.15329 5.19901 5.32974 5.36925 5.44436 5.51251 5.57732 5.66124 5.75847 5.82172 6.12342 6.44375 6.58924 7.21048 7.26190 7.91879 8.44559 9.23441 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002596 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.997053 B =10782.079220 C =12443.484719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C 0.142 3.858 4 N -0.717 5.717 5 C 0.513 3.487 6 O -0.583 6.583 7 C -0.146 4.146 8 C 0.131 3.869 9 N -1.116 6.116 10 S 2.625 3.375 11 C -0.651 4.651 12 O -0.998 6.998 13 O -1.006 7.006 14 C -0.096 4.096 15 C -0.123 4.123 16 C 0.135 3.865 17 N -0.605 5.605 18 C -0.255 4.255 19 H 0.062 0.938 20 C -0.043 4.043 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.294 1.294 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.197 3.803 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.426 0.574 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.005 0.995 47 H 0.249 0.751 48 H 0.067 0.933 49 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 16.780 -7.503 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C 0.018 3.982 4 N -0.368 5.368 5 C 0.300 3.700 6 O -0.464 6.464 7 C -0.187 4.187 8 C 0.004 3.996 9 N -0.876 5.876 10 S 2.721 3.279 11 C -0.805 4.805 12 O -0.989 6.989 13 O -0.997 6.997 14 C -0.134 4.134 15 C -0.162 4.162 16 C 0.010 3.990 17 N -0.328 5.328 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.786 3.214 23 H -0.221 1.221 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.071 3.929 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.262 0.738 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.058 0.942 48 H 0.085 0.915 49 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -5.362 17.432 -7.215 19.613 hybrid contribution -0.745 -0.946 1.098 1.629 sum -6.107 16.485 -6.117 18.614 Atomic orbital electron populations 1.21628 0.93335 1.01809 1.00724 1.21332 0.97164 0.92917 0.97861 1.21247 0.97847 0.91489 0.87654 1.46129 1.52966 1.11918 1.25810 1.20928 0.79627 0.81806 0.87678 1.90667 1.39780 1.67068 1.48892 1.21822 1.05063 0.95536 0.96254 1.20987 0.99456 0.92024 0.87115 1.55321 1.53015 1.39921 1.39381 1.04130 0.72915 0.74983 0.75856 1.30312 1.14426 1.16743 1.18981 1.93570 1.75185 1.83974 1.46152 1.93572 1.34335 1.84051 1.87699 1.21382 0.99606 0.95874 0.96519 1.21918 1.01008 0.95697 0.97571 1.21099 0.95823 0.94644 0.87431 1.44245 1.65266 1.06578 1.16676 1.19411 1.17389 1.15169 0.86579 0.92015 1.25642 0.98469 1.01167 0.98583 1.70188 1.28817 1.40007 1.18639 0.85437 0.79804 0.76847 0.79266 1.22148 1.21661 1.19500 1.20566 0.93684 0.83630 0.95024 0.92831 0.93751 0.91788 0.93681 0.90656 0.75548 0.84919 0.87681 0.91456 0.88930 0.73814 0.82851 0.83669 0.83894 0.93291 0.90248 0.91631 0.90387 0.93154 0.97728 0.94214 0.91452 1.00390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.81 71.98 0.56 -2.93 16 2 C -0.09 -2.92 0.53 -52.11 -0.03 -2.95 16 3 C 0.14 4.26 4.57 86.38 0.39 4.66 16 4 N -0.72 -20.23 5.00 -463.06 -2.31 -22.55 16 5 C 0.51 13.77 7.83 87.66 0.69 14.46 16 6 O -0.58 -19.14 15.98 -3.03 -0.05 -19.19 16 7 C -0.15 -2.68 5.84 29.85 0.17 -2.50 16 8 C 0.13 2.25 5.42 86.38 0.47 2.71 16 9 N -1.12 -15.52 5.89 -187.48 -1.10 -16.63 16 10 S 2.62 41.71 6.10 -56.49 -0.34 41.36 16 11 C -0.65 -4.15 10.89 113.37 1.23 -2.92 16 12 O -1.00 -22.67 18.08 -127.65 -2.31 -24.98 16 13 O -1.01 -26.07 17.50 -127.65 -2.23 -28.31 16 14 C -0.10 -2.78 4.71 30.62 0.14 -2.64 16 15 C -0.12 -3.70 5.74 30.67 0.18 -3.53 16 16 C 0.14 5.34 6.52 86.36 0.56 5.90 16 17 N -0.60 -28.22 2.43 -699.11 -1.70 -29.92 16 18 C -0.26 -13.15 9.58 84.03 0.81 -12.35 16 19 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 20 C -0.04 -2.25 4.92 84.86 0.42 -1.83 16 21 N -0.93 -51.64 11.20 21.65 0.24 -51.40 16 22 Si 0.96 42.32 29.59 68.60 2.03 44.35 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.20 8.57 3.72 86.36 0.32 8.89 16 27 H 0.05 1.81 5.97 -2.39 -0.01 1.79 16 28 H 0.04 1.30 6.86 -2.38 -0.02 1.28 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.41 11.46 6.22 -92.71 -0.58 10.88 16 33 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 1.49 7.65 -2.38 -0.02 1.47 16 36 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.43 4.58 8.62 -96.75 -0.83 3.75 16 38 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 1.96 6.34 -2.39 -0.02 1.95 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 48 H 0.07 3.20 4.97 -2.39 -0.01 3.18 16 49 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 Total: -1.00 -77.52 395.85 -2.31 -79.83 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.45 Total: 22.44 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.92 Total: 4.98 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -4.87 Total: -120.49 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -4.59 Total: -72.47 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 41.71 SS G_CDS: -0.34 Total: 41.36 kcal Total: -77.52 -2.31 -79.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324936313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.297 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds