Wall clock time and date at job start Wed Apr 1 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46802 * 300.00269 * 3 2 1 6 6 H 1.48494 * 109.46957 * 60.00131 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47533 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47528 * 304.99959 * 12 11 10 14 14 N 1.46900 * 109.47571 * 65.00314 * 12 11 10 15 15 C 1.50702 * 109.47121 * 185.00076 * 12 11 10 16 16 O 1.21283 * 120.00262 * 260.00193 * 15 12 11 17 17 N 1.34777 * 119.99928 * 79.72099 * 15 12 11 18 18 C 1.46499 * 120.00199 * 180.27479 * 17 15 12 19 19 C 1.52997 * 109.47555 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47273 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.47033 * 180.02562 * 20 19 18 22 22 C 1.47064 * 126.29606 * 274.69150 * 21 20 19 23 23 C 1.54324 * 109.96555 * 150.90591 * 22 21 20 24 24 C 1.55611 * 104.18972 * 45.50493 * 23 22 21 25 25 S 1.67001 * 126.30086 * 95.00336 * 21 20 19 26 26 O 1.42101 * 105.13219 * 298.88916 * 25 21 20 27 27 O 1.42091 * 105.13302 * 68.56450 * 25 21 20 28 28 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46998 * 60.00094 * 9 7 2 30 30 H 1.09002 * 109.47383 * 300.00915 * 9 7 2 31 31 H 1.09000 * 109.47036 * 59.99952 * 10 9 7 32 32 H 1.09002 * 109.47399 * 300.00741 * 10 9 7 33 33 H 1.08996 * 109.47173 * 60.00469 * 11 10 9 34 34 H 1.08998 * 109.47028 * 300.00055 * 11 10 9 35 35 H 1.00907 * 110.99710 * 296.04721 * 14 12 11 36 36 H 1.00898 * 110.99811 * 59.99595 * 14 12 11 37 37 H 0.97000 * 120.00317 * 0.28382 * 17 15 12 38 38 H 1.08998 * 109.47134 * 300.00670 * 18 17 15 39 39 H 1.09002 * 109.46857 * 59.99862 * 18 17 15 40 40 H 1.08998 * 109.47382 * 300.00439 * 19 18 17 41 41 H 1.09005 * 109.46800 * 60.00640 * 19 18 17 42 42 H 1.08992 * 109.47143 * 300.00104 * 20 19 18 43 43 H 1.08997 * 109.46799 * 60.00311 * 20 19 18 44 44 H 1.09000 * 109.35705 * 271.18149 * 22 21 20 45 45 H 1.08996 * 109.36474 * 30.83055 * 22 21 20 46 46 H 1.08996 * 110.64917 * 286.76854 * 23 22 21 47 47 H 1.08993 * 110.38873 * 164.10842 * 23 22 21 48 48 H 1.09002 * 111.16176 * 204.06028 * 24 23 22 49 49 H 1.08995 * 111.16929 * 79.79125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 2.4745 -6.1499 -0.0005 13 1 3.1593 -6.0430 -0.8418 14 7 3.2367 -6.1420 1.2552 15 6 1.7253 -7.4516 -0.1250 16 8 1.5122 -8.1253 0.8607 17 7 1.2870 -7.8641 -1.3309 18 6 0.5534 -9.1265 -1.4511 19 6 0.1739 -9.3586 -2.9150 20 6 -0.5917 -10.6773 -3.0405 21 7 -0.9545 -10.8998 -4.4424 22 6 -2.1449 -10.3741 -5.1275 23 6 -1.8461 -10.1805 -6.6292 24 6 -1.1187 -11.4916 -7.0455 25 16 -0.0963 -11.8029 -5.5544 26 8 1.1687 -11.1634 -5.6546 27 8 -0.2220 -13.1486 -5.1156 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8720 -3.6043 -0.8905 33 1 0.8540 -5.0446 -0.8914 34 1 0.8533 -5.0450 0.8886 35 1 3.7984 -5.3072 1.3320 36 1 2.6239 -6.2398 2.0508 37 1 1.4574 -7.3253 -2.1193 38 1 1.1823 -9.9466 -1.1047 39 1 -0.3507 -9.0805 -0.8439 40 1 -0.4548 -8.5385 -3.2618 41 1 1.0783 -9.4048 -3.5218 42 1 0.0374 -11.4970 -2.6939 43 1 -1.4960 -10.6315 -2.4337 44 1 -2.9700 -11.0762 -5.0082 45 1 -2.4211 -9.4157 -4.6880 46 1 -1.1969 -9.3187 -6.7839 47 1 -2.7740 -10.0652 -7.1892 48 1 -0.4943 -11.3330 -7.9248 49 1 -1.8299 -12.3008 -7.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331689233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:04 Heat of formation + Delta-G solvation = -122.895144 kcal Electronic energy + Delta-G solvation = -27930.467096 eV Core-core repulsion = 23825.902039 eV Total energy + Delta-G solvation = -4104.565057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.81869 -38.14659 -37.46958 -36.46923 -36.19982 -35.58809 -33.89830 -33.36062 -31.24906 -31.03985 -28.03079 -27.15272 -25.96449 -24.58453 -22.81782 -22.43423 -21.91400 -20.25723 -20.00836 -19.35286 -17.86312 -17.46205 -17.26008 -16.38914 -16.33018 -16.16455 -15.76324 -15.27488 -15.05030 -14.90877 -14.60686 -14.49146 -14.45936 -14.41376 -13.81634 -13.68337 -13.33823 -13.09117 -12.96803 -12.56713 -12.50723 -12.40407 -12.35963 -12.11500 -12.03652 -11.91144 -11.83400 -11.65312 -11.22870 -11.20351 -10.95581 -10.84886 -10.72437 -10.57196 -9.85677 -9.78536 -9.55192 -9.37886 -9.13999 -9.11274 -8.46612 -8.39488 -6.05136 -4.07875 -0.30974 1.95654 2.76177 3.06933 3.13242 3.27449 3.31076 3.35229 3.39228 3.70753 3.90128 4.24893 4.29102 4.41466 4.55278 4.61064 4.69236 4.80429 4.85898 4.88706 4.93880 5.02243 5.06940 5.12442 5.20217 5.24455 5.30945 5.33653 5.37116 5.45966 5.76235 5.78904 5.82264 5.97285 6.04829 6.25238 6.38361 6.56647 6.72796 7.00934 7.18455 7.52136 7.60764 7.62912 7.73573 7.94244 8.30336 8.36397 8.99566 9.56756 11.06105 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.001748 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.604163 B =16012.084977 C =17354.705779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.146 4.146 12 C 0.075 3.925 13 H 0.099 0.901 14 N -0.830 5.830 15 C 0.524 3.476 16 O -0.535 6.535 17 N -0.734 5.734 18 C 0.122 3.878 19 C -0.160 4.160 20 C 0.163 3.837 21 N -0.991 5.991 22 C 0.077 3.923 23 C -0.126 4.126 24 C -0.599 4.599 25 S 2.569 3.431 26 O -0.953 6.953 27 O -0.957 6.957 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.351 0.649 36 H 0.349 0.651 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.141 0.859 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -24.729 -15.386 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.186 4.186 12 C -0.040 4.040 13 H 0.117 0.883 14 N -0.362 5.362 15 C 0.311 3.689 16 O -0.411 6.411 17 N -0.387 5.387 18 C -0.003 4.003 19 C -0.200 4.200 20 C 0.038 3.962 21 N -0.832 5.832 22 C -0.049 4.049 23 C -0.166 4.166 24 C -0.730 4.730 25 S 2.665 3.335 26 O -0.942 6.942 27 O -0.947 6.947 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.129 0.871 48 H 0.159 0.841 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.976 -26.331 -14.670 30.550 hybrid contribution -0.756 2.491 -0.633 2.679 sum -5.731 -23.840 -15.302 28.903 Atomic orbital electron populations 1.69969 1.06084 1.26533 1.50887 1.25041 0.94860 0.99347 0.95303 0.86537 0.80131 0.83749 0.77593 1.19704 1.21013 1.21006 1.21289 0.93070 0.91058 1.50525 0.92607 1.19082 0.93940 0.91324 0.97188 1.21655 0.99138 0.93505 1.00399 1.22399 0.98312 0.95123 1.02732 1.21441 0.95518 0.91344 0.95722 0.88297 1.58687 1.28235 1.46040 1.03286 1.20731 0.78453 0.87152 0.82606 1.90657 1.56598 1.56736 1.37104 1.45953 1.58603 1.23975 1.10162 1.21185 0.96729 0.86599 0.95755 1.22358 1.02184 0.98994 0.96423 1.20896 0.99892 0.96723 0.78643 1.57236 1.36532 1.68834 1.20644 1.22137 0.88945 1.02602 0.91238 1.22710 1.03663 0.95483 0.94698 1.30860 1.15484 1.07388 1.19262 1.06509 0.74974 0.74511 0.77520 1.93635 1.39129 1.75684 1.85739 1.93624 1.86440 1.35644 1.78968 0.93038 0.96650 0.96715 0.93310 0.93030 0.91624 0.91794 0.83371 0.83752 0.76340 0.91384 0.91348 0.90427 0.89884 0.89945 0.89638 0.90534 0.88589 0.88509 0.87079 0.84077 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.07 4.92 -26.74 -0.13 -2.21 16 11 C -0.15 -2.30 4.84 -26.73 -0.13 -2.43 16 12 C 0.08 1.05 3.21 -68.86 -0.22 0.83 16 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 14 N -0.83 -11.91 8.94 -5.65 -0.05 -11.96 16 15 C 0.52 7.58 7.08 -10.98 -0.08 7.50 16 16 O -0.54 -9.55 16.25 5.55 0.09 -9.46 16 17 N -0.73 -8.05 5.56 -60.29 -0.33 -8.38 16 18 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 19 C -0.16 -1.13 5.65 -26.73 -0.15 -1.28 16 20 C 0.16 1.02 6.35 -4.04 -0.03 1.00 16 21 N -0.99 -5.77 3.31 -113.19 -0.38 -6.14 16 22 C 0.08 0.23 6.83 -3.04 -0.02 0.21 16 23 C -0.13 -0.23 6.81 -24.65 -0.17 -0.40 16 24 C -0.60 -1.54 7.51 38.55 0.29 -1.25 16 25 S 2.57 18.05 6.17 -107.50 -0.66 17.38 16 26 O -0.95 -10.10 18.13 -57.41 -1.04 -11.14 16 27 O -0.96 -10.20 18.13 -57.41 -1.04 -11.25 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.35 4.72 7.55 -39.29 -0.30 4.42 16 36 H 0.35 5.17 8.58 -39.29 -0.34 4.83 16 37 H 0.40 3.57 8.47 -40.82 -0.35 3.22 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 48 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.14 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 413.14 15.07 6.23 6.23 Total: -1.00 -38.70 413.14 -11.17 -49.87 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.49 Total: 4.17 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.21 Total: -9.81 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.02 Total: -52.36 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.99 Total: -31.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 18.05 SS G_CDS: -0.66 Total: 17.38 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -38.70 -11.17 -49.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331689233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.020 kcal (2) G-P(sol) polarization free energy of solvation -38.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds