Wall clock time and date at job start Wed Apr 1 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 119.99945 * 2 1 4 4 O 1.21589 * 120.00110 * 180.02562 * 3 2 1 5 5 N 1.34774 * 120.00190 * 359.97438 * 3 2 1 6 6 C 1.46501 * 120.00268 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.47161 * 300.00016 * 7 6 5 9 9 C 1.52996 * 109.47283 * 59.99749 * 7 6 5 10 10 C 1.50703 * 109.47336 * 180.02562 * 7 6 5 11 11 H 1.07999 * 119.99718 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00280 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99701 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00164 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46765 * 59.99484 * 14 12 10 16 16 H 1.48497 * 109.47282 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46630 * 299.99970 * 14 12 10 18 18 C 1.46503 * 120.00034 * 179.97438 * 2 1 3 19 19 H 1.08995 * 110.77865 * 194.98284 * 18 2 1 20 20 C 1.55400 * 110.69614 * 71.58697 * 18 2 1 21 21 C 1.54910 * 101.66683 * 277.04875 * 20 18 2 22 22 N 1.47418 * 104.83653 * 323.07662 * 21 20 18 23 23 S 1.65599 * 125.65273 * 204.16754 * 22 21 20 24 24 C 1.81405 * 104.44678 * 269.95472 * 23 22 21 25 25 O 1.42100 * 104.27698 * 26.02114 * 23 22 21 26 26 O 1.42091 * 104.28025 * 153.88404 * 23 22 21 27 27 C 1.47028 * 108.70355 * 24.12526 * 22 21 20 28 28 H 1.08999 * 109.47409 * 275.66597 * 1 2 3 29 29 H 1.08994 * 109.47158 * 35.67193 * 1 2 3 30 30 H 1.09007 * 109.47010 * 155.66309 * 1 2 3 31 31 H 0.97003 * 120.00156 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.47188 * 300.00736 * 6 5 3 33 33 H 1.09002 * 109.46646 * 60.00158 * 6 5 3 34 34 H 1.08991 * 109.46872 * 59.99880 * 8 7 6 35 35 H 1.09000 * 109.47297 * 180.02562 * 8 7 6 36 36 H 1.09009 * 109.46965 * 300.00149 * 8 7 6 37 37 H 1.09005 * 109.46873 * 60.00429 * 9 7 6 38 38 H 1.09007 * 109.47306 * 179.97438 * 9 7 6 39 39 H 1.08993 * 109.47243 * 299.99899 * 9 7 6 40 40 H 0.97000 * 119.99286 * 179.97438 * 13 12 10 41 41 H 1.09003 * 110.88997 * 158.97853 * 20 18 2 42 42 H 1.08996 * 111.07066 * 35.20107 * 20 18 2 43 43 H 1.09005 * 110.36591 * 204.23646 * 21 20 18 44 44 H 1.09001 * 110.45599 * 81.96649 * 21 20 18 45 45 H 1.09006 * 109.46881 * 59.99748 * 24 23 22 46 46 H 1.09000 * 109.47400 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.46911 * 299.99970 * 24 23 22 48 48 H 1.09002 * 109.88175 * 118.35554 * 27 22 21 49 49 H 1.09001 * 109.88303 * 239.37363 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0010 8 6 0.3231 4.6846 -1.2499 9 6 0.3241 4.6852 1.2486 10 6 1.9567 6.0711 -0.0022 11 1 3.0367 6.0711 -0.0026 12 6 1.2674 7.2652 -0.0028 13 7 -0.0478 7.2651 -0.0029 14 14 2.2013 8.8829 -0.0036 15 1 3.0552 8.9609 -1.2161 16 1 1.2364 10.0116 -0.0036 17 1 3.0550 8.9621 1.2089 18 6 2.1975 -1.2688 0.0006 19 1 3.2434 -1.1113 0.2640 20 6 2.0745 -1.9746 -1.3784 21 6 0.7074 -2.6905 -1.2430 22 7 0.6521 -3.1359 0.1612 23 16 -0.2569 -4.3934 0.7398 24 6 -1.8403 -3.6349 1.1961 25 8 -0.4200 -5.2524 -0.3803 26 8 0.4412 -4.8260 1.8994 27 6 1.5383 -2.2794 0.9628 28 1 -0.3634 0.1015 1.0226 29 1 -0.3633 0.8348 -0.5992 30 1 -0.3633 -0.9364 -0.4235 31 1 0.4950 2.3344 -0.0005 32 1 2.8242 3.6612 0.8888 33 1 2.8241 3.6604 -0.8912 34 1 -0.2218 3.7407 -1.2494 35 1 -0.3849 5.5134 -1.2501 36 1 0.9495 4.7422 -2.1402 37 1 0.9511 4.7432 2.1383 38 1 -0.3840 5.5140 1.2489 39 1 -0.2209 3.7413 1.2490 40 1 -0.5328 8.1052 -0.0030 41 1 2.8804 -2.6948 -1.5197 42 1 2.0561 -1.2477 -2.1904 43 1 0.6598 -3.5475 -1.9150 44 1 -0.1077 -1.9983 -1.4539 45 1 -2.2916 -3.1781 0.3152 46 1 -2.5091 -4.3996 1.5913 47 1 -1.6720 -2.8713 1.9555 48 1 0.9578 -1.7484 1.7173 49 1 2.3047 -2.8867 1.4445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365643675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:07 Heat of formation + Delta-G solvation = -77.420990 kcal Electronic energy + Delta-G solvation = -30046.301978 eV Core-core repulsion = 25943.708829 eV Total energy + Delta-G solvation = -4102.593149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.44899 -38.58758 -37.50035 -36.41752 -36.32277 -34.65509 -33.27142 -31.13107 -30.38003 -29.83157 -29.27873 -26.84542 -25.76373 -25.59220 -24.78030 -22.76556 -21.68772 -19.52859 -19.29503 -18.91547 -18.24094 -17.95075 -17.18232 -16.55523 -16.02247 -15.82681 -15.63463 -14.97537 -14.74381 -14.34464 -14.21035 -13.89848 -13.73475 -13.59674 -13.46900 -13.20312 -12.96888 -12.84911 -12.79821 -12.62194 -12.49957 -12.40668 -12.17321 -12.00923 -11.86092 -11.52311 -11.42358 -11.35442 -11.27826 -11.21851 -10.86942 -10.74707 -10.41568 -10.22749 -9.77327 -9.66473 -9.41893 -9.33474 -8.82967 -8.74737 -8.43019 -8.20866 -6.04623 -4.14513 -0.19602 2.19540 2.80108 3.28697 3.32960 3.36930 3.46214 3.47490 3.66210 4.05905 4.30212 4.32439 4.35049 4.44694 4.60602 4.70754 4.87368 4.99360 5.04051 5.16984 5.21654 5.22329 5.26138 5.45341 5.54254 5.62157 5.64015 5.75944 5.86811 5.92317 6.15401 6.33354 6.46041 6.53094 6.76163 6.77787 6.87374 6.99525 7.04885 7.17573 7.34751 7.52309 7.67153 7.97862 8.09029 8.32227 8.38101 8.84849 8.95750 9.51391 10.96827 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.002221 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.590756 B =12602.522414 C =13004.984647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.630 5.630 3 C 0.701 3.299 4 O -0.595 6.595 5 N -0.731 5.731 6 C 0.149 3.851 7 C 0.057 3.943 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.506 4.506 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.154 3.846 19 H 0.120 0.880 20 C -0.139 4.139 21 C 0.107 3.893 22 N -1.014 6.014 23 S 2.628 3.372 24 C -0.675 4.675 25 O -0.953 6.953 26 O -0.952 6.952 27 C 0.111 3.889 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.003 0.997 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.004 0.996 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.073 0.927 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -20.977 -0.087 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.368 5.368 3 C 0.402 3.598 4 O -0.474 6.474 5 N -0.386 5.386 6 C 0.026 3.974 7 C 0.056 3.944 8 C -0.187 4.187 9 C -0.187 4.187 10 C -0.544 4.544 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.048 3.952 19 H 0.138 0.862 20 C -0.179 4.179 21 C -0.017 4.017 22 N -0.853 5.853 23 S 2.722 3.278 24 C -0.824 4.824 25 O -0.944 6.944 26 O -0.942 6.942 27 C -0.015 4.015 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.230 0.770 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.092 0.908 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.777 -21.746 0.027 22.265 hybrid contribution -0.707 1.539 0.115 1.697 sum -5.484 -20.207 0.142 20.939 Atomic orbital electron populations 1.22000 0.80618 1.03574 1.01762 1.46982 1.05843 1.04484 1.79517 1.15995 0.85386 0.80403 0.78036 1.90882 1.11636 1.86244 1.58651 1.45648 1.10120 1.05080 1.77730 1.21603 0.95010 0.80398 1.00391 1.18351 0.91925 0.91373 0.92745 1.21821 1.00248 0.98959 0.97663 1.21817 1.00245 0.98976 0.97661 1.20946 0.92878 0.89708 1.50904 0.92441 1.24875 0.94877 0.98965 0.94770 1.69793 1.05784 1.26400 1.50576 0.86624 0.79571 0.82902 0.78707 1.20265 1.21357 1.20274 1.21837 0.97707 0.81610 0.94092 0.86181 1.23241 0.96699 0.99769 0.98211 1.22293 0.98678 0.99372 0.81344 1.58676 1.58516 1.51508 1.16599 1.04390 0.76198 0.73154 0.74069 1.30596 1.24186 1.14908 1.12752 1.93608 1.86861 1.62272 1.51656 1.93616 1.70294 1.79070 1.51261 1.22122 0.93820 0.91921 0.93654 0.92892 0.91337 0.89955 0.76981 0.92911 0.92916 0.97756 0.89622 0.95425 0.95430 0.89646 0.97711 0.92962 0.89421 0.89247 0.89521 0.90895 0.85290 0.85380 0.85231 0.90828 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 8.81 59.85 0.53 1.08 16 2 N -0.63 -7.42 2.86 -177.41 -0.51 -7.93 16 3 C 0.70 11.66 8.28 -86.93 -0.72 10.94 16 4 O -0.60 -12.13 15.78 5.29 0.08 -12.04 16 5 N -0.73 -12.52 4.82 -65.23 -0.31 -12.83 16 6 C 0.15 3.09 4.50 -4.04 -0.02 3.07 16 7 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 8 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 9 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 10 C -0.51 -12.99 8.01 -34.44 -0.28 -13.26 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 13 N -0.89 -23.15 9.35 55.43 0.52 -22.64 16 14 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.15 1.54 3.52 -65.96 -0.23 1.31 16 19 H 0.12 1.41 7.14 -51.93 -0.37 1.04 16 20 C -0.14 -1.13 6.73 -24.45 -0.16 -1.30 16 21 C 0.11 0.73 6.23 -2.53 -0.02 0.72 16 22 N -1.01 -7.37 3.36 -111.41 -0.37 -7.75 16 23 S 2.63 19.70 6.29 -107.50 -0.68 19.02 16 24 C -0.67 -2.70 10.99 101.05 1.11 -1.58 16 25 O -0.95 -10.06 17.28 -57.54 -0.99 -11.06 16 26 O -0.95 -10.48 17.60 -57.54 -1.01 -11.49 16 27 C 0.11 0.90 5.93 -3.06 -0.02 0.89 16 28 H 0.05 0.42 8.13 -51.93 -0.42 -0.01 16 29 H 0.07 0.62 6.67 -51.93 -0.35 0.27 16 30 H 0.08 0.51 3.89 -51.92 -0.20 0.31 16 31 H 0.39 6.06 4.02 -40.82 -0.16 5.90 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 35 H 0.09 2.07 6.07 -51.93 -0.31 1.76 16 36 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 2.07 6.07 -51.93 -0.32 1.76 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 44 H 0.07 0.40 5.67 -51.93 -0.29 0.10 16 45 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 46 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 48 H 0.07 0.55 7.54 -51.93 -0.39 0.15 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -33.52 387.09 -9.54 -43.06 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.70 Total: 2.78 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 0.62 Total: -0.36 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.68 Total: -51.15 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.92 Total: -34.59 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 19.70 SS G_CDS: -0.68 Total: 19.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.52 -9.54 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365643675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.357 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds