Wall clock time and date at job start Wed Apr 1 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 119.99945 * 2 1 4 4 O 1.21589 * 120.00110 * 180.02562 * 3 2 1 5 5 N 1.34774 * 120.00190 * 359.97438 * 3 2 1 6 6 C 1.46501 * 120.00268 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47229 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.47161 * 300.00016 * 7 6 5 9 9 C 1.52996 * 109.47283 * 59.99749 * 7 6 5 10 10 C 1.50703 * 109.47336 * 180.02562 * 7 6 5 11 11 H 1.07999 * 119.99718 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00280 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99701 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00164 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46765 * 59.99484 * 14 12 10 16 16 H 1.48497 * 109.47282 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46630 * 299.99970 * 14 12 10 18 18 C 1.46503 * 120.00034 * 179.97438 * 2 1 3 19 19 H 1.08995 * 110.77865 * 194.98284 * 18 2 1 20 20 C 1.55400 * 110.69614 * 71.58697 * 18 2 1 21 21 C 1.54910 * 101.66683 * 277.04875 * 20 18 2 22 22 N 1.47418 * 104.83653 * 323.07662 * 21 20 18 23 23 S 1.65599 * 125.65273 * 204.16754 * 22 21 20 24 24 C 1.81405 * 104.44678 * 269.95472 * 23 22 21 25 25 O 1.42100 * 104.27698 * 26.02114 * 23 22 21 26 26 O 1.42091 * 104.28025 * 153.88404 * 23 22 21 27 27 C 1.47028 * 108.70355 * 24.12526 * 22 21 20 28 28 H 1.08999 * 109.47409 * 275.66597 * 1 2 3 29 29 H 1.08994 * 109.47158 * 35.67193 * 1 2 3 30 30 H 1.09007 * 109.47010 * 155.66309 * 1 2 3 31 31 H 0.97003 * 120.00156 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.47188 * 300.00736 * 6 5 3 33 33 H 1.09002 * 109.46646 * 60.00158 * 6 5 3 34 34 H 1.08991 * 109.46872 * 59.99880 * 8 7 6 35 35 H 1.09000 * 109.47297 * 180.02562 * 8 7 6 36 36 H 1.09009 * 109.46965 * 300.00149 * 8 7 6 37 37 H 1.09005 * 109.46873 * 60.00429 * 9 7 6 38 38 H 1.09007 * 109.47306 * 179.97438 * 9 7 6 39 39 H 1.08993 * 109.47243 * 299.99899 * 9 7 6 40 40 H 0.97000 * 119.99286 * 179.97438 * 13 12 10 41 41 H 1.09003 * 110.88997 * 158.97853 * 20 18 2 42 42 H 1.08996 * 111.07066 * 35.20107 * 20 18 2 43 43 H 1.09005 * 110.36591 * 204.23646 * 21 20 18 44 44 H 1.09001 * 110.45599 * 81.96649 * 21 20 18 45 45 H 1.09006 * 109.46881 * 59.99748 * 24 23 22 46 46 H 1.09000 * 109.47400 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.46911 * 299.99970 * 24 23 22 48 48 H 1.09002 * 109.88175 * 118.35554 * 27 22 21 49 49 H 1.09001 * 109.88303 * 239.37363 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3343 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0010 8 6 0.3231 4.6846 -1.2499 9 6 0.3241 4.6852 1.2486 10 6 1.9567 6.0711 -0.0022 11 1 3.0367 6.0711 -0.0026 12 6 1.2674 7.2652 -0.0028 13 7 -0.0478 7.2651 -0.0029 14 14 2.2013 8.8829 -0.0036 15 1 3.0552 8.9609 -1.2161 16 1 1.2364 10.0116 -0.0036 17 1 3.0550 8.9621 1.2089 18 6 2.1975 -1.2688 0.0006 19 1 3.2434 -1.1113 0.2640 20 6 2.0745 -1.9746 -1.3784 21 6 0.7074 -2.6905 -1.2430 22 7 0.6521 -3.1359 0.1612 23 16 -0.2569 -4.3934 0.7398 24 6 -1.8403 -3.6349 1.1961 25 8 -0.4200 -5.2524 -0.3803 26 8 0.4412 -4.8260 1.8994 27 6 1.5383 -2.2794 0.9628 28 1 -0.3634 0.1015 1.0226 29 1 -0.3633 0.8348 -0.5992 30 1 -0.3633 -0.9364 -0.4235 31 1 0.4950 2.3344 -0.0005 32 1 2.8242 3.6612 0.8888 33 1 2.8241 3.6604 -0.8912 34 1 -0.2218 3.7407 -1.2494 35 1 -0.3849 5.5134 -1.2501 36 1 0.9495 4.7422 -2.1402 37 1 0.9511 4.7432 2.1383 38 1 -0.3840 5.5140 1.2489 39 1 -0.2209 3.7413 1.2490 40 1 -0.5328 8.1052 -0.0030 41 1 2.8804 -2.6948 -1.5197 42 1 2.0561 -1.2477 -2.1904 43 1 0.6598 -3.5475 -1.9150 44 1 -0.1077 -1.9983 -1.4539 45 1 -2.2916 -3.1781 0.3152 46 1 -2.5091 -4.3996 1.5913 47 1 -1.6720 -2.8713 1.9555 48 1 0.9578 -1.7484 1.7173 49 1 2.3047 -2.8867 1.4445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365643675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:06 Heat of formation + Delta-G solvation = -101.809620 kcal Electronic energy + Delta-G solvation = -30047.359549 eV Core-core repulsion = 25943.708829 eV Total energy + Delta-G solvation = -4103.650720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51633 -39.61344 -38.18800 -38.04649 -37.01969 -35.71520 -34.85078 -32.69210 -31.25528 -30.20675 -29.97635 -27.78502 -27.53480 -27.37182 -26.41455 -23.41031 -22.70347 -20.65155 -20.58153 -19.91722 -19.27983 -18.71755 -18.02474 -17.70013 -17.22209 -16.77742 -16.69212 -16.62072 -16.03400 -15.30991 -15.25506 -14.90175 -14.75454 -14.59536 -14.32198 -14.03544 -13.93800 -13.90879 -13.76497 -13.54091 -13.40384 -13.20911 -13.18280 -13.11386 -13.05823 -12.73272 -12.67129 -12.60444 -12.55523 -12.22367 -12.19352 -12.10778 -12.04351 -11.92050 -11.45490 -11.25139 -11.00897 -10.68611 -10.37415 -10.07363 -9.94943 -9.39809 -8.00538 -6.15606 -0.73451 1.45476 1.46865 1.52920 1.62289 1.72639 2.20586 2.47443 2.95736 3.06753 3.14478 3.23330 3.44220 3.75275 4.07056 4.11006 4.11465 4.25685 4.31444 4.40185 4.45394 4.53571 4.56516 4.62371 4.73611 4.80456 4.87976 4.90178 5.00195 5.02373 5.03805 5.08309 5.10857 5.13346 5.22993 5.23446 5.32336 5.41754 5.62766 5.68079 5.70039 5.70230 6.00958 6.18664 6.24808 6.46453 6.88487 7.07805 7.51999 7.65174 8.98130 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.002221 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.590756 B =12602.522414 C =13004.984647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.617 5.617 3 C 0.697 3.303 4 O -0.639 6.639 5 N -0.725 5.725 6 C 0.168 3.832 7 C 0.053 3.947 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.529 4.529 11 H 0.043 0.957 12 C 0.030 3.970 13 N -0.898 5.898 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.278 1.278 18 C 0.147 3.853 19 H 0.096 0.904 20 C -0.135 4.135 21 C 0.109 3.891 22 N -1.014 6.014 23 S 2.632 3.368 24 C -0.652 4.652 25 O -0.990 6.990 26 O -0.995 6.995 27 C 0.117 3.883 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.405 0.595 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.087 0.913 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 -21.911 -0.009 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.354 5.354 3 C 0.399 3.601 4 O -0.521 6.521 5 N -0.381 5.381 6 C 0.043 3.957 7 C 0.052 3.948 8 C -0.176 4.176 9 C -0.176 4.176 10 C -0.568 4.568 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.537 5.537 14 Si 0.770 3.230 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.204 1.204 18 C 0.041 3.959 19 H 0.115 0.885 20 C -0.176 4.176 21 C -0.015 4.015 22 N -0.852 5.852 23 S 2.731 3.269 24 C -0.806 4.806 25 O -0.981 6.981 26 O -0.986 6.986 27 C -0.009 4.009 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.243 0.757 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.165 0.835 48 H 0.105 0.895 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.140 -22.742 0.090 23.837 hybrid contribution -0.011 1.772 0.098 1.775 sum -7.151 -20.970 0.188 22.157 Atomic orbital electron populations 1.22334 0.78107 1.05240 1.03233 1.46954 1.07324 1.03279 1.77853 1.16142 0.84920 0.81316 0.77763 1.90855 1.13786 1.87017 1.60470 1.45319 1.10357 1.04187 1.78238 1.21101 0.94358 0.81662 0.98583 1.18340 0.92204 0.90707 0.93515 1.21651 0.99518 0.99746 0.96707 1.21648 0.99515 0.99746 0.96713 1.21252 0.92621 0.91646 1.51243 0.93836 1.25413 0.95631 1.01220 0.94730 1.69893 1.06340 1.26782 1.50686 0.85857 0.78600 0.80190 0.78388 1.20332 1.20833 1.20375 1.21917 0.96675 0.81333 0.95961 0.88547 1.23196 0.98039 0.99600 0.96736 1.22359 0.98266 0.99758 0.81138 1.58520 1.59024 1.51053 1.16646 1.04051 0.77255 0.72910 0.72688 1.30392 1.20375 1.15497 1.14349 1.93561 1.87642 1.63971 1.52877 1.93562 1.72413 1.80239 1.52342 1.21997 0.94113 0.91424 0.93354 0.91183 0.91233 0.87146 0.75683 0.94826 0.94788 0.94448 0.91892 0.96427 0.96467 0.91910 0.94434 0.93037 0.89091 0.89841 0.89270 0.88696 0.82966 0.83722 0.83511 0.89456 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 8.81 127.77 1.13 1.83 16 2 N -0.62 -13.40 2.86 -833.45 -2.38 -15.78 16 3 C 0.70 22.71 8.28 179.06 1.48 24.19 16 4 O -0.64 -26.52 15.78 -3.99 -0.06 -26.58 16 5 N -0.72 -23.93 4.82 -478.55 -2.31 -26.24 16 6 C 0.17 6.99 4.50 86.38 0.39 7.38 16 7 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 8 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 9 C -0.12 -5.05 8.08 71.98 0.58 -4.47 16 10 C -0.53 -27.50 8.01 25.60 0.21 -27.30 16 11 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 12 C 0.03 1.55 5.15 84.65 0.44 1.98 16 13 N -0.90 -46.78 9.35 21.45 0.20 -46.58 16 14 Si 0.94 41.99 29.54 68.60 2.03 44.01 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.15 2.80 3.52 46.27 0.16 2.96 16 19 H 0.10 2.33 7.14 -2.39 -0.02 2.31 16 20 C -0.14 -2.04 6.73 32.07 0.22 -1.83 16 21 C 0.11 1.21 6.23 86.86 0.54 1.75 16 22 N -1.01 -12.37 3.36 -506.39 -1.70 -14.07 16 23 S 2.63 34.01 6.29 -56.49 -0.36 33.66 16 24 C -0.65 -2.24 10.99 113.37 1.25 -0.99 16 25 O -0.99 -19.52 17.28 -127.65 -2.21 -21.73 16 26 O -0.99 -20.98 17.60 -127.65 -2.25 -23.22 16 27 C 0.12 1.71 5.93 86.73 0.51 2.22 16 28 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 29 H 0.07 0.97 6.67 -2.39 -0.02 0.95 16 30 H 0.11 0.85 3.89 -2.38 -0.01 0.84 16 31 H 0.40 11.36 4.02 -92.71 -0.37 10.98 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 35 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 36 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.06 2.99 6.07 -2.38 -0.01 2.98 16 39 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 40 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.00 7.67 -2.38 -0.02 0.98 16 44 H 0.10 0.64 5.67 -2.39 -0.01 0.62 16 45 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.15 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.09 1.05 7.54 -2.39 -0.02 1.03 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.56 387.09 -0.99 -75.55 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.59 Total: 15.35 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 7.45 Total: 5.62 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.19 Total: -102.67 kcal Atomic # 8 Polarization: -67.02 SS G_CDS: -4.52 Total: -71.54 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 34.01 SS G_CDS: -0.36 Total: 33.66 kcal Total: -74.56 -0.99 -75.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365643675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds