Wall clock time and date at job start Wed Apr 1 2020 04:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 116.99771 * 2 1 4 4 O 1.20827 * 120.00572 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47302 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47295 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47475 * 300.00542 * 7 6 5 9 9 N 1.46498 * 109.47107 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00120 * 155.00180 * 9 8 7 11 11 O 1.21584 * 119.99715 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00560 * 179.97438 * 10 9 8 13 13 C 1.39454 * 120.00636 * 174.94189 * 12 10 9 14 14 C 1.38643 * 119.65179 * 174.64959 * 13 12 10 15 15 C 1.40819 * 118.67709 * 180.25091 * 14 13 12 16 16 C 1.41540 * 121.00060 * 179.72348 * 15 14 13 17 17 H 1.07999 * 119.99888 * 26.12813 * 16 15 14 18 18 C 1.40033 * 119.99998 * 206.12111 * 16 15 14 19 19 N 1.30735 * 120.00310 * 9.80965 * 18 16 15 20 20 Si 1.86803 * 119.99741 * 189.80254 * 18 16 15 21 21 H 1.48507 * 109.47226 * 60.00181 * 20 18 16 22 22 H 1.48503 * 109.47134 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47462 * 300.00096 * 20 18 16 24 24 C 1.41168 * 118.00080 * 359.51577 * 15 14 13 25 25 C 1.36594 * 119.13106 * 0.46362 * 24 15 14 26 26 N 1.32069 * 121.25596 * 359.77777 * 25 24 15 27 27 C 1.53002 * 109.47001 * 59.99692 * 8 7 6 28 28 C 1.52997 * 109.47281 * 300.00192 * 5 3 2 29 29 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47232 * 299.99904 * 1 2 3 31 31 H 1.08998 * 109.47260 * 59.99887 * 1 2 3 32 32 H 1.09001 * 109.47115 * 60.00060 * 5 3 2 33 33 H 1.09001 * 109.46794 * 60.00099 * 6 5 3 34 34 H 1.08994 * 109.47239 * 300.00912 * 6 5 3 35 35 H 1.09003 * 109.47402 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46929 * 60.00414 * 7 6 5 37 37 H 1.09001 * 109.46938 * 299.99867 * 8 7 6 38 38 H 0.96998 * 120.00312 * 334.99474 * 9 8 7 39 39 H 0.97003 * 119.99600 * 354.94306 * 12 10 9 40 40 H 1.08001 * 120.66448 * 359.97438 * 14 13 12 41 41 H 0.96999 * 120.00465 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.43301 * 180.24163 * 24 15 14 43 43 H 1.08000 * 119.37119 * 179.79087 * 25 24 15 44 44 H 1.09001 * 109.47132 * 60.00294 * 27 8 7 45 45 H 1.08998 * 109.46975 * 180.02562 * 27 8 7 46 46 H 1.09001 * 109.46938 * 299.99976 * 28 5 3 47 47 H 1.09003 * 109.47041 * 59.99601 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 6 5.5279 2.8223 -0.0011 8 6 6.0750 2.1291 1.2484 9 7 7.5380 2.2054 1.2480 10 6 8.2165 2.1393 2.4106 11 8 7.6144 2.0170 3.4598 12 7 9.5624 2.2090 2.4104 13 6 10.2590 2.2470 3.6179 14 6 11.6449 2.2061 3.6118 15 6 12.3273 2.2403 4.8432 16 6 13.7410 2.1953 4.8946 17 1 14.3234 2.5495 4.0569 18 6 14.3846 1.6916 6.0317 19 7 13.6915 1.0887 6.9620 20 14 16.2335 1.8808 6.2192 21 1 16.5863 3.3234 6.2168 22 1 16.6666 1.2670 7.5002 23 1 16.9178 1.2021 5.0895 24 6 11.5591 2.3252 6.0245 25 6 10.1969 2.3610 5.9307 26 7 9.5894 2.3221 4.7587 27 6 5.6412 0.6619 1.2488 28 6 4.1139 0.5811 1.2482 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.9556 0.7810 -0.8908 33 1 3.6106 3.2365 0.8889 34 1 3.6099 3.2361 -0.8909 35 1 5.8370 3.8676 -0.0010 36 1 5.9177 2.3279 -0.8909 37 1 5.6852 2.6235 2.1382 38 1 8.0184 2.3033 0.4111 39 1 10.0467 2.2326 1.5702 40 1 12.1901 2.1448 2.6816 41 1 14.1374 0.7395 7.7495 42 1 12.0421 2.3579 6.9900 43 1 9.6053 2.4226 6.8322 44 1 6.0310 0.1675 0.3589 45 1 6.0306 0.1682 2.1391 46 1 3.7245 1.0750 2.1385 47 1 3.8048 -0.4642 1.2481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366303868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:15 Heat of formation + Delta-G solvation = -112.085734 kcal Electronic energy + Delta-G solvation = -29464.555504 eV Core-core repulsion = 25225.015227 eV Total energy + Delta-G solvation = -4239.540277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.83353 -41.38330 -40.06476 -38.94099 -37.50588 -36.23635 -35.32482 -35.08188 -32.55209 -31.84662 -31.37973 -29.90110 -28.42697 -27.88488 -25.00185 -23.75769 -23.66967 -23.41725 -21.94092 -21.54465 -20.87606 -19.66897 -19.24957 -18.57429 -17.91023 -17.72530 -17.42164 -17.07520 -16.49686 -16.34842 -16.07781 -15.92471 -15.51927 -15.17776 -14.92682 -14.90971 -14.75244 -14.34106 -14.17741 -14.15537 -13.91229 -13.60268 -13.24297 -13.16072 -12.95080 -12.84585 -12.81928 -12.59221 -12.33130 -12.14149 -12.05926 -11.84666 -11.81290 -11.55672 -11.43952 -11.38950 -11.30223 -11.17049 -11.11727 -9.98680 -9.92712 -9.59782 -8.81977 -8.56771 -6.56762 0.86217 1.02422 1.12923 1.42308 1.54736 1.60111 1.63856 1.77769 2.21420 2.34719 2.87491 3.20477 3.55353 3.63768 3.75154 3.79193 3.99281 4.14328 4.16386 4.24179 4.31434 4.32448 4.37274 4.40055 4.48797 4.66720 4.71360 4.73845 4.84169 4.87117 4.96432 4.99568 5.06901 5.08409 5.14751 5.16038 5.27775 5.32908 5.35849 5.39468 5.52451 5.65532 5.67547 5.97105 5.99163 6.29522 6.57731 6.69249 6.81852 6.85336 7.08843 7.68782 7.94552 8.30668 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034959 B = 0.001677 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.737340 B =16692.000575 C =16982.972266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.465 3.535 4 O -0.539 6.539 5 C -0.073 4.073 6 C -0.097 4.097 7 C -0.110 4.110 8 C 0.160 3.840 9 N -0.723 5.723 10 C 0.688 3.312 11 O -0.582 6.582 12 N -0.659 5.659 13 C 0.365 3.635 14 C -0.313 4.313 15 C 0.117 3.883 16 C -0.482 4.482 17 H 0.089 0.911 18 C 0.033 3.967 19 N -0.821 5.821 20 Si 0.993 3.007 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.256 1.256 24 C -0.242 4.242 25 C 0.096 3.904 26 N -0.578 5.578 27 C -0.122 4.122 28 C -0.101 4.101 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.412 0.588 39 H 0.423 0.577 40 H 0.125 0.875 41 H 0.291 0.709 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 -2.234 -18.378 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.429 6.429 5 C -0.092 4.092 6 C -0.135 4.135 7 C -0.148 4.148 8 C 0.055 3.945 9 N -0.381 5.381 10 C 0.388 3.612 11 O -0.457 6.457 12 N -0.309 5.309 13 C 0.135 3.865 14 C -0.339 4.339 15 C 0.109 3.891 16 C -0.513 4.513 17 H 0.107 0.893 18 C -0.183 4.183 19 N -0.447 5.447 20 Si 0.813 3.187 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.181 1.181 24 C -0.266 4.266 25 C -0.054 4.054 26 N -0.298 5.298 27 C -0.160 4.160 28 C -0.139 4.139 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.249 0.751 39 H 0.261 0.739 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.722 -2.146 -17.254 24.826 hybrid contribution 1.643 0.094 0.118 1.650 sum -16.078 -2.052 -17.136 23.587 Atomic orbital electron populations 1.23528 0.75116 1.05612 1.02394 1.86514 1.24748 1.33046 1.83558 1.24265 0.92826 0.81023 0.70912 1.90660 1.68067 1.37391 1.46745 1.21231 0.85304 0.99703 1.02962 1.21354 0.95150 0.93343 1.03636 1.21729 0.94313 1.01862 0.96891 1.20910 0.77674 0.96286 0.99634 1.45015 1.07146 1.79120 1.06833 1.16312 0.81598 0.78335 0.84967 1.90994 1.67851 1.54887 1.31938 1.42400 1.05292 1.75985 1.07246 1.18017 0.87718 0.94984 0.85767 1.21367 0.91479 1.22069 0.98957 1.18016 0.94440 0.85784 0.90854 1.19871 0.91210 1.37644 1.02530 0.89339 1.26915 1.06244 0.91428 0.93700 1.69814 1.40521 1.26002 1.08374 0.85087 0.75039 0.79844 0.78746 1.18247 1.19431 1.18051 1.22025 0.93890 1.10468 1.00230 1.21871 0.92446 0.96840 0.94257 1.67296 1.40073 1.24994 0.97424 1.21857 0.94951 0.96373 1.02852 1.21400 0.95051 1.01723 0.95716 0.85231 0.92449 0.91720 0.84038 0.92620 0.89450 0.90069 0.87859 0.92712 0.75062 0.73854 0.85716 0.89845 0.86270 0.84785 0.88838 0.93836 0.92875 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.83 10.47 -51.41 -0.54 -6.37 16 3 C 0.47 8.45 7.26 71.24 0.52 8.96 16 4 O -0.54 -12.99 15.73 21.96 0.35 -12.65 16 5 C -0.07 -0.97 2.63 -11.54 -0.03 -1.01 16 6 C -0.10 -1.35 4.49 30.59 0.14 -1.22 16 7 C -0.11 -1.34 5.39 30.59 0.16 -1.18 16 8 C 0.16 3.28 2.46 44.99 0.11 3.39 16 9 N -0.72 -16.37 5.08 -457.82 -2.33 -18.70 16 10 C 0.69 24.70 8.48 179.06 1.52 26.22 16 11 O -0.58 -27.45 14.30 -3.98 -0.06 -27.51 16 12 N -0.66 -23.59 5.40 -322.37 -1.74 -25.33 16 13 C 0.37 17.30 7.41 132.76 0.98 18.28 16 14 C -0.31 -15.01 9.74 23.00 0.22 -14.78 16 15 C 0.12 6.30 5.60 -21.11 -0.12 6.18 16 16 C -0.48 -24.83 9.13 23.52 0.21 -24.61 16 17 H 0.09 4.25 7.87 -2.91 -0.02 4.22 16 18 C 0.03 1.61 5.31 85.29 0.45 2.06 16 19 N -0.82 -41.96 10.70 21.84 0.23 -41.73 16 20 Si 0.99 36.25 29.57 68.60 2.03 38.28 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 22 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 24 C -0.24 -13.15 8.73 22.60 0.20 -12.96 16 25 C 0.10 5.06 11.10 84.27 0.94 5.99 16 26 N -0.58 -30.64 7.89 -194.27 -1.53 -32.17 16 27 C -0.12 -2.29 5.49 30.58 0.17 -2.12 16 28 C -0.10 -1.64 5.13 30.58 0.16 -1.48 16 29 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 31 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 32 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 1.54 7.58 -2.39 -0.02 1.53 16 38 H 0.41 5.86 8.62 -92.71 -0.80 5.06 16 39 H 0.42 10.91 8.72 -92.71 -0.81 10.10 16 40 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 41 H 0.29 13.42 8.29 -92.71 -0.77 12.65 16 42 H 0.12 6.61 6.11 -2.91 -0.02 6.59 16 43 H 0.13 6.41 8.06 -2.91 -0.02 6.38 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 1.29 8.11 -2.39 -0.02 1.27 16 Total: -1.00 -77.80 390.24 2.65 -75.15 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.59 Total: 37.78 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.83 Total: 13.24 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.36 Total: -117.92 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.25 Total: -46.52 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -77.80 2.65 -75.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366303868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.935 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds