Wall clock time and date at job start Wed Apr 1 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99999 * 2 1 4 4 O 1.21586 * 120.00147 * 0.02562 * 3 2 1 5 5 N 1.34771 * 119.99957 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00138 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.52252 * 34.91720 * 6 5 3 8 8 C 1.53041 * 109.49465 * 274.83413 * 6 5 3 9 9 C 1.53039 * 109.53647 * 178.68205 * 8 6 5 10 10 C 1.52758 * 109.38439 * 61.24252 * 9 8 6 11 11 N 1.46927 * 109.00682 * 305.58958 * 10 9 8 12 12 S 1.65608 * 120.63047 * 233.58217 * 11 10 9 13 13 O 1.42105 * 104.27567 * 25.78970 * 12 11 10 14 14 O 1.42099 * 104.27801 * 153.64940 * 12 11 10 15 15 C 1.81397 * 104.44917 * 269.72011 * 12 11 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.47225 * 300.00230 * 16 15 12 18 18 C 1.53003 * 109.46839 * 59.99943 * 16 15 12 19 19 C 1.50702 * 109.47210 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00272 * 0.02562 * 19 16 15 21 21 C 1.37882 * 119.99776 * 179.97438 * 19 16 15 22 22 N 1.31509 * 119.99723 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 119.99713 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47221 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46855 * 120.00333 * 23 21 19 26 26 H 1.48503 * 109.47244 * 240.00019 * 23 21 19 27 27 C 1.46923 * 118.73985 * 53.30967 * 11 10 9 28 28 H 1.08999 * 109.47488 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47020 * 300.00158 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99685 * 1 2 3 31 31 H 0.96996 * 119.99658 * 179.97438 * 2 1 3 32 32 H 0.97005 * 119.99972 * 359.97438 * 5 3 2 33 33 H 1.09005 * 109.46439 * 298.70420 * 8 6 5 34 34 H 1.08997 * 109.45704 * 58.66538 * 8 6 5 35 35 H 1.08998 * 109.49687 * 181.31562 * 9 8 6 36 36 H 1.09003 * 109.49942 * 301.38469 * 9 8 6 37 37 H 1.08996 * 109.51653 * 185.70676 * 10 9 8 38 38 H 1.09005 * 109.43483 * 65.41750 * 10 9 8 39 39 H 1.09001 * 109.47492 * 299.99928 * 15 12 11 40 40 H 1.09001 * 109.47146 * 59.99771 * 15 12 11 41 41 H 1.09003 * 109.47406 * 59.99684 * 17 16 15 42 42 H 1.08998 * 109.47432 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.46960 * 299.99735 * 17 16 15 44 44 H 1.08996 * 109.47146 * 60.00068 * 18 16 15 45 45 H 1.08998 * 109.47039 * 180.02562 * 18 16 15 46 46 H 1.09006 * 109.46851 * 300.00362 * 18 16 15 47 47 H 0.97001 * 119.99602 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.59009 * 66.42846 * 27 11 10 49 49 H 1.09006 * 109.58796 * 186.85605 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.2192 2.4359 0.0000 7 1 3.6720 3.1721 0.5888 8 6 4.3687 2.9399 -1.4372 9 6 5.1050 4.2815 -1.4350 10 6 6.4997 4.0935 -0.8407 11 7 6.3752 3.4709 0.4843 12 16 7.0800 4.1652 1.8123 13 8 7.1637 5.5451 1.4835 14 8 6.2867 3.7189 2.9036 15 6 8.7351 3.4265 1.8846 16 6 9.4955 3.9951 3.0843 17 6 9.6204 5.5128 2.9363 18 6 8.7349 3.6691 4.3713 19 6 10.8704 3.3809 3.1447 20 1 11.1719 2.6577 2.4015 21 6 11.7438 3.7432 4.1483 22 7 11.3768 4.6242 5.0530 23 14 13.4482 2.9824 4.2227 24 1 13.6135 2.0273 3.0976 25 1 14.4727 4.0523 4.1179 26 1 13.6135 2.2633 5.5114 27 6 5.6085 2.2239 0.6096 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 3.9716 0.3271 -0.0005 33 1 4.9373 2.2146 -2.0192 34 1 3.3817 3.0682 -1.8815 35 1 5.1906 4.6512 -2.4568 36 1 4.5493 5.0007 -0.8333 37 1 6.9882 5.0631 -0.7444 38 1 7.0882 3.4487 -1.4935 39 1 8.6462 2.3452 1.9897 40 1 9.2771 3.6590 0.9679 41 1 8.6258 5.9567 2.8929 42 1 10.1617 5.9180 3.7912 43 1 10.1623 5.7450 2.0195 44 1 8.6459 2.5880 4.4768 45 1 9.2764 4.0746 5.2259 46 1 7.7403 4.1130 4.3278 47 1 11.9911 4.8788 5.7592 48 1 6.1228 1.4236 0.0775 49 1 5.5091 1.9603 1.6627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413437051.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:27 Heat of formation + Delta-G solvation = -128.726510 kcal Electronic energy + Delta-G solvation = -30299.076702 eV Core-core repulsion = 26194.258778 eV Total energy + Delta-G solvation = -4104.817924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22259 -39.37596 -38.19479 -38.11600 -36.88405 -35.64859 -35.49791 -33.62236 -33.08723 -30.92766 -28.33773 -27.69355 -27.29080 -27.24505 -25.56719 -23.97198 -22.05562 -21.55534 -21.29123 -19.97820 -19.29868 -18.90806 -17.91978 -17.51617 -17.08813 -16.86987 -16.66257 -16.49553 -15.80229 -15.63156 -15.55817 -15.22769 -14.95215 -14.92063 -14.63670 -14.46890 -14.42277 -13.96341 -13.86805 -13.69528 -13.41088 -13.06035 -12.99083 -12.90936 -12.88505 -12.73827 -12.50427 -12.43224 -12.22641 -12.11956 -12.01186 -11.96468 -11.87855 -11.73519 -11.56268 -11.40521 -11.30723 -10.62202 -10.41961 -10.41388 -9.98518 -9.72759 -8.02267 -6.20993 -0.66759 1.43977 1.47086 1.56488 1.58615 1.92572 2.14487 2.45025 2.92304 3.18800 3.22611 3.37484 3.59142 3.78452 3.98154 4.03871 4.09034 4.21623 4.27735 4.34397 4.48108 4.53856 4.60429 4.67613 4.76611 4.81476 4.86531 4.86902 4.90177 4.96743 4.99216 5.00153 5.07663 5.11427 5.21764 5.33165 5.39191 5.47175 5.50709 5.51590 5.65720 5.69090 5.97113 6.02523 6.12005 6.34381 6.84556 7.13234 7.47533 7.60030 8.97824 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.002671 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.259213 B =10478.602553 C =10940.835348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.737 5.737 3 C 0.695 3.305 4 O -0.641 6.641 5 N -0.725 5.725 6 C 0.153 3.847 7 H 0.051 0.949 8 C -0.117 4.117 9 C -0.128 4.128 10 C 0.106 3.894 11 N -0.998 5.998 12 S 2.604 3.396 13 O -0.988 6.988 14 O -0.991 6.991 15 C -0.579 4.579 16 C 0.068 3.932 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.513 4.513 20 H 0.066 0.934 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.955 3.045 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.109 3.891 28 H 0.114 0.886 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.417 0.583 32 H 0.416 0.584 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.030 0.970 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.029 0.971 47 H 0.260 0.740 48 H 0.118 0.882 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -13.142 -16.024 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.394 3.606 4 O -0.522 6.522 5 N -0.381 5.381 6 C 0.045 3.955 7 H 0.070 0.930 8 C -0.156 4.156 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.837 5.837 12 S 2.704 3.296 13 O -0.979 6.979 14 O -0.981 6.981 15 C -0.712 4.712 16 C 0.066 3.934 17 C -0.219 4.219 18 C -0.218 4.218 19 C -0.552 4.552 20 H 0.084 0.916 21 C -0.184 4.184 22 N -0.549 5.549 23 Si 0.781 3.219 24 H -0.187 1.187 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.017 4.017 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.253 0.747 32 H 0.254 0.746 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.070 0.930 48 H 0.135 0.865 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.155 -11.472 -15.309 24.406 hybrid contribution 1.584 -0.884 0.482 1.877 sum -13.571 -12.356 -14.827 23.594 Atomic orbital electron populations 1.21521 0.77491 1.04069 1.01007 1.44820 1.08219 1.06788 1.79505 1.16248 0.82266 0.84539 0.77554 1.90914 1.68954 1.32518 1.59829 1.44806 1.04013 1.09796 1.79497 1.20978 0.91525 0.85285 0.97672 0.93042 1.21820 1.00749 0.97629 0.95379 1.21790 0.95281 0.97208 1.02523 1.21705 0.98465 0.99281 0.82344 1.57583 1.66098 1.36998 1.22981 1.05064 0.77453 0.74351 0.72716 1.93489 1.87999 1.32855 1.83517 1.93490 1.68225 1.82955 1.53408 1.30466 1.19056 1.13125 1.08581 1.17936 0.94711 0.92351 0.88386 1.22214 0.99518 0.97920 1.02203 1.22211 0.97244 1.00141 1.02205 1.21322 0.97667 1.24369 1.11840 0.91565 1.25710 1.01878 0.95475 0.95353 1.69962 1.36656 1.32900 1.15343 0.85547 0.80012 0.78312 0.77991 1.18659 1.21145 1.21092 1.21749 0.90363 0.86502 1.03049 0.86712 0.94049 0.93466 0.74708 0.74632 0.88571 0.92651 0.87708 0.93760 0.89537 0.87487 0.84178 0.84227 0.95138 0.91203 0.93903 0.93889 0.91209 0.95191 0.93000 0.86451 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 10.70 127.77 1.37 2.58 16 2 N -0.74 -9.67 5.72 -500.19 -2.86 -12.53 16 3 C 0.69 15.34 8.53 179.06 1.53 16.86 16 4 O -0.64 -21.20 16.01 -3.99 -0.06 -21.26 16 5 N -0.72 -12.08 5.08 -457.45 -2.33 -14.40 16 6 C 0.15 3.33 2.60 45.07 0.12 3.44 16 7 H 0.05 1.58 7.58 -2.39 -0.02 1.57 16 8 C -0.12 -2.11 5.46 30.62 0.17 -1.95 16 9 C -0.13 -2.46 6.06 30.53 0.19 -2.28 16 10 C 0.11 2.15 6.40 86.22 0.55 2.70 16 11 N -1.00 -25.27 3.23 -513.85 -1.66 -26.93 16 12 S 2.60 93.83 4.49 -56.49 -0.25 93.57 16 13 O -0.99 -41.10 14.20 -127.65 -1.81 -42.91 16 14 O -0.99 -41.35 14.21 -127.65 -1.81 -43.16 16 15 C -0.58 -20.91 5.12 71.98 0.37 -20.55 16 16 C 0.07 3.23 0.52 -52.93 -0.03 3.21 16 17 C -0.16 -7.96 7.78 71.98 0.56 -7.40 16 18 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 19 C -0.51 -26.05 8.01 25.60 0.21 -25.85 16 20 H 0.07 3.20 7.74 -2.91 -0.02 3.17 16 21 C 0.02 0.78 5.15 84.66 0.44 1.22 16 22 N -0.91 -50.22 9.35 21.45 0.20 -50.02 16 23 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 C 0.11 2.22 5.91 86.36 0.51 2.73 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.42 2.18 8.84 -92.71 -0.82 1.36 16 32 H 0.42 3.43 8.62 -92.70 -0.80 2.64 16 33 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.99 6.85 -2.39 -0.02 1.97 16 38 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 40 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 41 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 42 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 45 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 46 H 0.03 1.43 5.46 -2.38 -0.01 1.41 16 47 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 48 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.09 2.05 6.86 -2.38 -0.02 2.03 16 Total: -1.00 -79.55 386.88 -2.68 -82.23 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.65 Total: 24.58 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 6.53 Total: -32.63 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.64 Total: -103.89 kcal Atomic # 8 Polarization: -103.65 SS G_CDS: -3.69 Total: -107.34 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 93.83 SS G_CDS: -0.25 Total: 93.57 kcal Total: -79.55 -2.68 -82.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413437051.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.495 kcal (2) G-P(sol) polarization free energy of solvation -79.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds