Wall clock time and date at job start Wed Apr 1 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99435 * 2 1 4 4 C 1.53002 * 109.46714 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47224 * 65.00070 * 4 3 2 6 6 C 1.46506 * 120.00050 * 84.99842 * 5 4 3 7 7 C 1.50699 * 109.46888 * 84.99991 * 6 5 4 8 8 H 1.08002 * 120.00516 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 6 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 S 1.65601 * 119.99973 * 264.99611 * 5 4 3 16 16 O 1.42104 * 104.27505 * 26.07657 * 15 5 4 17 17 O 1.42102 * 104.27704 * 153.92790 * 15 5 4 18 18 C 1.81398 * 104.44930 * 270.00131 * 15 5 4 19 19 C 1.53002 * 109.46568 * 180.02562 * 18 15 5 20 20 H 1.08999 * 110.27786 * 307.08919 * 19 18 15 21 21 C 1.54952 * 110.30563 * 185.00245 * 19 18 15 22 22 C 1.55311 * 100.93937 * 204.64361 * 21 19 18 23 23 C 1.54378 * 102.25527 * 34.12880 * 22 21 19 24 24 H 1.09003 * 109.82835 * 98.16082 * 23 22 21 25 25 C 1.53001 * 109.83138 * 219.04294 * 23 22 21 26 26 C 1.53004 * 117.49919 * 248.62395 * 25 23 22 27 27 C 1.52993 * 117.50175 * 180.02562 * 25 23 22 28 28 O 1.43230 * 107.58950 * 338.64728 * 23 22 21 29 29 H 1.09000 * 109.46667 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46873 * 299.99584 * 1 2 3 31 31 H 1.08998 * 109.47769 * 59.99956 * 1 2 3 32 32 H 1.08998 * 109.47039 * 60.00400 * 3 2 1 33 33 H 1.08995 * 109.47382 * 300.00047 * 3 2 1 34 34 H 1.09003 * 109.46989 * 304.99718 * 4 3 2 35 35 H 1.09007 * 109.47078 * 185.00174 * 4 3 2 36 36 H 1.09001 * 109.46452 * 325.00249 * 6 5 4 37 37 H 1.08997 * 109.46855 * 205.00167 * 6 5 4 38 38 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 39 39 H 1.09001 * 109.47248 * 299.99848 * 18 15 5 40 40 H 1.08991 * 109.47237 * 60.00233 * 18 15 5 41 41 H 1.09007 * 111.12401 * 322.55517 * 21 19 18 42 42 H 1.08994 * 111.13060 * 86.68111 * 21 19 18 43 43 H 1.08998 * 110.84562 * 152.32766 * 22 21 19 44 44 H 1.09000 * 110.84333 * 275.73606 * 22 21 19 45 45 H 1.09001 * 115.54882 * 34.32827 * 25 23 22 46 46 H 1.09003 * 117.49793 * 359.97438 * 26 25 23 47 47 H 1.08998 * 117.49917 * 145.01418 * 26 25 23 48 48 H 1.09000 * 117.50344 * 214.98281 * 27 25 23 49 49 H 1.09006 * 117.49932 * 359.96990 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1807 1.3892 -2.4462 7 6 5.5680 1.9772 -2.4180 8 1 6.2305 1.7590 -1.5935 9 6 5.9915 2.7940 -3.4450 10 7 5.1846 3.0602 -4.4488 11 14 7.7138 3.5167 -3.4140 12 1 7.6873 4.8297 -2.7208 13 1 8.6250 2.5936 -2.6909 14 1 8.1983 3.7013 -4.8056 15 16 4.2415 -1.0686 -1.3191 16 8 3.4058 -1.6013 -0.3006 17 8 4.0351 -1.4020 -2.6849 18 6 5.9894 -1.2611 -0.8739 19 6 6.3618 -2.7449 -0.9003 20 1 5.6692 -3.3192 -0.2851 21 6 7.8155 -2.9434 -0.4018 22 6 8.1836 -4.2845 -1.0931 23 6 7.4139 -4.1873 -2.4278 24 1 8.0852 -3.8512 -3.2181 25 6 6.8287 -5.5537 -2.7902 26 6 7.4219 -6.2778 -4.0005 27 6 6.0269 -5.6568 -4.0892 28 8 6.3579 -3.2361 -2.2502 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5684 0.8410 35 1 3.9784 2.1767 0.0890 36 1 3.4454 2.1937 -2.4626 37 1 4.0653 0.7730 -3.3378 38 1 5.4825 3.6351 -5.1712 39 1 6.6083 -0.7188 -1.5887 40 1 6.1555 -0.8622 0.1267 41 1 8.4618 -2.1349 -0.7436 42 1 7.8492 -3.0379 0.6835 43 1 9.2575 -4.3486 -1.2682 44 1 7.8372 -5.1329 -0.5029 45 1 6.5033 -6.1641 -1.9479 46 1 8.2288 -5.7805 -4.5388 47 1 7.4870 -7.3648 -3.9545 48 1 5.1738 -6.3351 -4.1016 49 1 5.9159 -4.7510 -4.6854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414216184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:53 Heat of formation + Delta-G solvation = -134.367313 kcal Electronic energy + Delta-G solvation = -30608.964406 eV Core-core repulsion = 26471.609128 eV Total energy + Delta-G solvation = -4137.355278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.81824 -37.62143 -36.73961 -36.16611 -35.35294 -34.92411 -32.56721 -32.30997 -31.49705 -29.38726 -26.70101 -26.54547 -25.67673 -22.98409 -22.57966 -22.34894 -21.68231 -21.28431 -20.18250 -17.94480 -16.99818 -16.91177 -16.46684 -16.34794 -16.12656 -15.67390 -15.28683 -15.17826 -14.78047 -14.68588 -14.45843 -14.34482 -13.52563 -13.39364 -13.22445 -12.64616 -12.54176 -12.40492 -12.34044 -11.90076 -11.80799 -11.66611 -11.62930 -11.51518 -11.39502 -11.37083 -11.13189 -11.07075 -11.00136 -10.96250 -10.91265 -10.50024 -10.38690 -10.35720 -10.10898 -10.06353 -9.83509 -9.68624 -9.48989 -9.18318 -8.48283 -7.92681 -6.09674 -4.17177 1.13259 3.24138 3.31460 3.32722 3.43663 3.56726 4.05620 4.25119 4.34691 4.37564 4.42901 4.59836 4.81408 4.91188 4.94103 4.99577 5.03691 5.16737 5.23286 5.25019 5.33743 5.38946 5.48719 5.53007 5.55453 5.59327 5.60776 5.65665 5.70848 5.75476 5.78135 5.82201 5.95415 5.95647 6.00844 6.02556 6.12029 6.22396 6.25802 6.31461 6.61131 7.06390 7.40932 7.48300 7.63293 7.75513 7.88143 8.17072 8.87403 9.48942 10.98049 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007990 B = 0.004704 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.712126 B = 5951.218366 C = 8129.405430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.038 3.962 4 C 0.136 3.864 5 N -0.983 5.983 6 C 0.244 3.756 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.274 1.274 14 H -0.285 1.285 15 S 2.615 3.385 16 O -0.953 6.953 17 O -0.944 6.944 18 C -0.644 4.644 19 C 0.092 3.908 20 H 0.080 0.920 21 C -0.144 4.144 22 C -0.148 4.148 23 C 0.108 3.892 24 H 0.084 0.916 25 C -0.171 4.171 26 C -0.177 4.177 27 C -0.165 4.165 28 O -0.357 6.357 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.147 0.853 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -11.985 9.096 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.041 4.041 4 C 0.009 3.991 5 N -0.821 5.821 6 C 0.122 3.878 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.199 1.199 14 H -0.211 1.211 15 S 2.706 3.294 16 O -0.943 6.943 17 O -0.934 6.934 18 C -0.770 4.770 19 C 0.033 3.967 20 H 0.097 0.903 21 C -0.183 4.183 22 C -0.185 4.185 23 C 0.050 3.950 24 H 0.101 0.899 25 C -0.189 4.189 26 C -0.214 4.214 27 C -0.202 4.202 28 O -0.276 6.276 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.749 -12.625 8.515 15.328 hybrid contribution 1.578 1.157 0.312 1.981 sum 3.327 -11.468 8.827 14.849 Atomic orbital electron populations 1.22686 0.82712 1.02162 0.99134 1.88203 1.18088 1.26688 1.95145 1.23097 0.95503 0.85471 0.99998 1.21074 0.91549 1.00264 0.86196 1.57465 1.80404 1.26324 1.17898 1.19196 0.96394 0.90828 0.81420 1.21592 0.99553 1.30394 1.06932 0.92113 1.24950 0.97432 0.96210 0.95184 1.69939 1.35905 1.36690 1.09935 0.86599 0.84514 0.79449 0.77431 1.20598 1.19891 1.21059 1.04863 0.76343 0.73545 0.74677 1.93583 1.62011 1.78144 1.60600 1.93559 1.84071 1.82280 1.33484 1.30967 1.31324 1.02050 1.12690 1.22498 0.97959 0.91384 0.84889 0.90252 1.23295 0.95774 0.97825 1.01378 1.23169 1.01334 0.98119 0.95917 1.22277 0.88031 0.87171 0.97489 0.89864 1.22683 1.05739 0.97484 0.93017 1.22947 0.97707 0.99499 1.01206 1.22875 0.94174 1.03232 0.99900 1.88653 1.52650 1.58588 1.27701 0.90147 0.94862 0.94587 0.93322 0.92733 0.90978 0.88742 0.94604 0.92677 0.92576 0.83452 0.84920 0.89606 0.89628 0.89851 0.90234 0.87726 0.88745 0.88826 0.88791 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.77 8.51 -56.11 -0.48 -7.25 16 3 C 0.04 0.63 6.28 37.16 0.23 0.87 16 4 C 0.14 2.38 5.80 -4.04 -0.02 2.35 16 5 N -0.98 -20.76 2.65 -115.66 -0.31 -21.07 16 6 C 0.24 6.13 5.41 -5.19 -0.03 6.10 16 7 C -0.55 -14.22 9.38 -34.44 -0.32 -14.55 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 11 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 S 2.62 54.50 5.29 -107.50 -0.57 53.94 16 16 O -0.95 -20.30 14.89 -65.98 -0.98 -21.28 16 17 O -0.94 -23.55 16.31 -57.69 -0.94 -24.49 16 18 C -0.64 -10.83 5.90 37.16 0.22 -10.61 16 19 C 0.09 1.40 3.40 -25.70 -0.09 1.31 16 20 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 21 C -0.14 -1.67 6.57 -24.48 -0.16 -1.83 16 22 C -0.15 -1.52 6.54 -24.78 -0.16 -1.68 16 23 C 0.11 1.42 3.71 -26.01 -0.10 1.33 16 24 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 25 C -0.17 -2.03 5.38 -90.62 -0.49 -2.51 16 26 C -0.18 -1.77 10.18 -26.76 -0.27 -2.05 16 27 C -0.16 -2.05 10.19 -26.76 -0.27 -2.32 16 28 O -0.36 -6.18 10.33 -35.23 -0.36 -6.55 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.07 1.11 7.61 -51.93 -0.40 0.72 16 35 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 36 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.06 1.56 6.82 -51.93 -0.35 1.20 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.15 2.67 8.14 -51.92 -0.42 2.25 16 40 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.00 8.06 -51.92 -0.42 0.59 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 45 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 46 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -34.33 409.36 -10.88 -45.22 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.68 Total: 4.82 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -0.45 Total: -20.36 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.43 Total: -45.79 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -2.76 Total: -59.57 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.57 Total: 53.94 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.33 -10.88 -45.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414216184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.152 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds