Wall clock time and date at job start Wed Apr 1 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47209 * 119.99799 * 2 1 3 5 5 H 1.08004 * 119.99711 * 122.34465 * 4 2 1 6 6 C 1.37871 * 120.00197 * 302.07940 * 4 2 1 7 7 N 1.31518 * 119.99879 * 353.79971 * 6 4 2 8 8 Si 1.86803 * 120.00147 * 173.80337 * 6 4 2 9 9 H 1.48497 * 109.47022 * 94.98684 * 8 6 4 10 10 H 1.48499 * 109.47169 * 214.98423 * 8 6 4 11 11 H 1.48498 * 109.47068 * 334.98674 * 8 6 4 12 12 C 1.53001 * 109.47151 * 239.99948 * 2 1 3 13 13 N 1.46499 * 109.47247 * 60.00063 * 12 2 1 14 14 C 1.34775 * 120.00084 * 180.02562 * 13 12 2 15 15 O 1.21580 * 119.99863 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99558 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99611 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47276 * 179.97438 * 17 16 14 19 19 H 1.08998 * 110.64194 * 308.14885 * 18 17 16 20 20 C 1.55160 * 110.71739 * 71.47953 * 18 17 16 21 21 C 1.54914 * 101.58044 * 153.86886 * 20 18 17 22 22 N 1.47424 * 104.82952 * 322.98953 * 21 20 18 23 23 S 1.65603 * 125.64692 * 204.09371 * 22 21 20 24 24 C 1.81392 * 104.45116 * 270.04369 * 23 22 21 25 25 O 1.42100 * 104.27700 * 26.11642 * 23 22 21 26 26 O 1.42100 * 104.27396 * 153.97014 * 23 22 21 27 27 C 1.47018 * 108.70554 * 24.12944 * 22 21 20 28 28 H 1.09008 * 109.46881 * 300.00126 * 1 2 3 29 29 H 1.09003 * 109.47156 * 59.99853 * 1 2 3 30 30 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47022 * 174.13128 * 3 2 1 32 32 H 1.08993 * 109.47444 * 294.12663 * 3 2 1 33 33 H 1.08994 * 109.47375 * 54.13257 * 3 2 1 34 34 H 0.97005 * 119.99788 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47267 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.46950 * 299.99701 * 12 2 1 37 37 H 0.97002 * 119.99725 * 359.97438 * 13 12 2 38 38 H 0.96993 * 120.00852 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.47146 * 300.00322 * 17 16 14 40 40 H 1.09002 * 109.46837 * 60.00460 * 17 16 14 41 41 H 1.09003 * 111.00178 * 271.94134 * 20 18 17 42 42 H 1.08998 * 111.00307 * 35.79226 * 20 18 17 43 43 H 1.09001 * 110.36030 * 204.15508 * 21 20 18 44 44 H 1.08993 * 110.36502 * 81.82614 * 21 20 18 45 45 H 1.09007 * 109.47097 * 59.99575 * 24 23 22 46 46 H 1.08995 * 109.47435 * 180.02562 * 24 23 22 47 47 H 1.09007 * 109.47369 * 300.00181 * 24 23 22 48 48 H 1.09001 * 109.88797 * 239.52417 * 27 22 21 49 49 H 1.08999 * 110.01152 * 118.42971 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6841 -1.5659 1.1318 6 6 1.6643 -0.2649 2.4822 7 7 0.9766 0.8492 2.6078 8 14 2.1424 -1.2435 3.9999 9 1 3.4024 -0.6970 4.5645 10 1 1.0618 -1.1443 5.0136 11 1 2.3431 -2.6671 3.6280 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5758 -1.4800 -3.7810 16 7 1.4272 0.1436 -4.7699 17 6 1.7811 -0.3569 -6.1005 18 6 1.1469 0.5378 -7.1673 19 1 0.0792 0.6575 -6.9833 20 6 1.8566 1.9166 -7.2201 21 6 1.5878 2.3488 -8.6833 22 7 1.6772 1.1035 -9.4671 23 16 2.0332 1.0025 -11.0813 24 6 0.4209 1.0957 -11.9072 25 8 2.7971 2.1713 -11.3454 26 8 2.5983 -0.2922 -11.2351 27 6 1.3970 -0.0339 -8.5787 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1250 1.4443 0.1051 32 1 1.7651 1.9251 -0.9378 33 1 1.5934 1.9857 0.8327 34 1 0.7180 1.1628 3.4886 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7490 -1.2492 37 1 0.9937 0.7578 -2.3564 38 1 0.8698 0.9325 -4.6810 39 1 2.8649 -0.3479 -6.2157 40 1 1.4119 -1.3761 -6.2153 41 1 1.4044 2.6159 -6.5168 42 1 2.9254 1.8132 -7.0333 43 1 2.3448 3.0602 -9.0137 44 1 0.5923 2.7833 -8.7736 45 1 -0.0624 2.0397 -11.6553 46 1 0.5614 1.0356 -12.9864 47 1 -0.2054 0.2672 -11.5760 48 1 2.2529 -0.7086 -8.5590 49 1 0.5121 -0.5681 -8.9245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427179031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:12 Heat of formation + Delta-G solvation = -130.045645 kcal Electronic energy + Delta-G solvation = -28620.533373 eV Core-core repulsion = 24515.658248 eV Total energy + Delta-G solvation = -4104.875126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.06018 -39.64652 -38.20422 -38.16968 -37.03039 -35.76965 -34.94161 -32.87901 -31.84034 -30.37936 -30.19295 -27.52894 -27.52229 -27.05929 -25.51933 -23.35665 -21.96516 -21.50146 -20.54703 -19.91146 -19.39899 -18.64800 -17.83178 -17.73431 -17.21720 -16.87369 -16.60017 -16.56949 -16.15446 -15.32986 -15.16235 -15.08867 -14.76165 -14.63918 -14.53787 -14.28259 -13.97894 -13.94894 -13.89043 -13.76815 -13.24813 -13.23031 -13.13488 -13.07953 -13.02494 -12.66784 -12.65239 -12.56583 -12.20668 -12.14158 -12.11746 -11.96589 -11.84362 -11.58720 -11.44194 -11.33765 -11.10114 -10.68436 -10.36808 -10.23774 -9.90303 -9.59133 -8.01072 -6.14409 -0.73661 1.42948 1.46634 1.55288 1.64069 1.88670 2.27307 2.48105 2.96362 3.06264 3.22974 3.42199 3.58080 3.73441 3.83219 4.06924 4.19800 4.40072 4.41632 4.46881 4.50541 4.57339 4.60184 4.74551 4.76737 4.79782 4.93654 4.96404 5.03498 5.08902 5.10219 5.10962 5.15023 5.20063 5.24091 5.33436 5.42490 5.48338 5.60710 5.68532 5.70209 5.72057 6.15643 6.18661 6.25398 6.46490 6.89477 7.24943 7.52520 7.71266 8.98421 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036718 B = 0.001659 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.376125 B =16869.809112 C =17135.756936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.116 4.116 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.646 6.646 16 N -0.728 5.728 17 C 0.147 3.853 18 C -0.094 4.094 19 H 0.123 0.877 20 C -0.127 4.127 21 C 0.112 3.888 22 N -1.018 6.018 23 S 2.627 3.373 24 C -0.646 4.646 25 O -0.996 6.996 26 O -0.999 6.999 27 C 0.122 3.878 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.406 0.594 38 H 0.413 0.587 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.151 0.849 46 H 0.142 0.858 47 H 0.149 0.851 48 H 0.057 0.943 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 6.876 -28.220 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.174 4.174 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.394 3.606 15 O -0.528 6.528 16 N -0.385 5.385 17 C 0.023 3.977 18 C -0.114 4.114 19 H 0.141 0.859 20 C -0.166 4.166 21 C -0.013 4.013 22 N -0.856 5.856 23 S 2.726 3.274 24 C -0.800 4.800 25 O -0.987 6.987 26 O -0.990 6.990 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.243 0.757 38 H 0.249 0.751 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.167 0.833 48 H 0.075 0.925 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.980 6.006 -28.643 30.086 hybrid contribution -0.341 -0.076 1.263 1.311 sum -7.322 5.930 -27.379 28.955 Atomic orbital electron populations 1.21624 0.96886 0.98691 1.00364 1.18373 0.93397 0.93074 0.90175 1.21664 0.98144 0.97869 0.99740 1.21265 1.29992 1.13820 0.91639 0.93900 1.25425 0.95262 0.95588 1.00814 1.69935 1.39208 1.20908 1.23526 0.85793 0.77758 0.79348 0.80178 1.20735 1.20707 1.20153 1.21073 0.96531 0.94674 0.83375 1.45168 1.55853 1.33229 1.03843 1.16227 0.80210 0.82682 0.81448 1.90868 1.45156 1.30025 1.86778 1.44823 1.56611 1.33191 1.03895 1.21165 0.99125 0.97693 0.79742 1.22397 1.02363 0.94699 0.91982 0.85894 1.22920 1.00942 0.96352 0.96415 1.22232 1.03193 0.85365 0.90471 1.58442 1.87965 1.14170 1.25039 1.04113 0.78171 0.72337 0.72741 1.30335 1.21231 1.13879 1.14598 1.93554 1.69437 1.51393 1.84280 1.93563 1.77443 1.42496 1.85466 1.21714 1.01827 0.87893 0.88952 0.92283 0.94015 0.96267 0.96722 0.94284 0.91942 0.93072 0.94999 0.94739 0.75664 0.75068 0.93396 0.92082 0.87523 0.92135 0.90792 0.88149 0.83072 0.83933 0.83298 0.92484 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.06 71.98 0.58 -4.47 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.86 8.01 25.60 0.20 -27.66 16 5 H 0.04 2.33 7.75 -2.91 -0.02 2.30 16 6 C 0.03 1.52 5.13 84.65 0.43 1.96 16 7 N -0.90 -47.28 9.46 21.45 0.20 -47.08 16 8 Si 0.94 42.53 29.54 68.60 2.03 44.55 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.14 4.50 86.38 0.39 7.53 16 13 N -0.73 -24.08 4.91 -478.54 -2.35 -26.43 16 14 C 0.69 22.97 8.57 179.06 1.53 24.50 16 15 O -0.65 -27.90 16.34 -3.97 -0.06 -27.97 16 16 N -0.73 -15.25 5.48 -478.53 -2.62 -17.87 16 17 C 0.15 2.72 4.97 86.38 0.43 3.14 16 18 C -0.09 -0.90 2.96 -9.60 -0.03 -0.93 16 19 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 20 C -0.13 -1.20 6.45 31.99 0.21 -0.99 16 21 C 0.11 0.93 7.07 86.86 0.61 1.55 16 22 N -1.02 -11.02 3.62 -506.44 -1.83 -12.85 16 23 S 2.63 33.61 6.29 -56.49 -0.36 33.26 16 24 C -0.65 -1.34 10.99 113.37 1.25 -0.10 16 25 O -1.00 -20.35 17.28 -127.65 -2.21 -22.56 16 26 O -1.00 -21.52 17.60 -127.65 -2.25 -23.76 16 27 C 0.12 1.31 6.49 86.73 0.56 1.88 16 28 H 0.06 2.82 6.15 -2.38 -0.01 2.81 16 29 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.04 1.38 6.72 -2.39 -0.02 1.36 16 33 H 0.06 3.00 6.20 -2.39 -0.01 2.99 16 34 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 35 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 11.18 6.17 -92.71 -0.57 10.61 16 38 H 0.41 5.58 8.49 -92.71 -0.79 4.79 16 39 H 0.05 1.10 8.00 -2.39 -0.02 1.08 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.06 0.85 7.94 -2.39 -0.02 0.83 16 43 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 44 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.06 0.87 7.82 -2.39 -0.02 0.85 16 49 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -79.51 399.41 -3.12 -82.63 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.40 Total: 13.87 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.73 Total: 4.20 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -6.60 Total: -104.23 kcal Atomic # 8 Polarization: -69.77 SS G_CDS: -4.52 Total: -74.28 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 33.61 SS G_CDS: -0.36 Total: 33.26 kcal Total: -79.51 -3.12 -82.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427179031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.414 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds