Wall clock time and date at job start Wed Apr 1 2020 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65594 * 120.00025 * 2 1 4 4 O 1.42097 * 104.28128 * 309.44885 * 3 2 1 5 5 O 1.42103 * 104.27660 * 181.58888 * 3 2 1 6 6 C 1.81401 * 104.45078 * 65.52024 * 3 2 1 7 7 H 1.08999 * 109.50091 * 300.19850 * 6 3 2 8 8 C 1.53046 * 109.50046 * 60.26082 * 6 3 2 9 9 C 1.53035 * 109.54119 * 181.35012 * 8 6 3 10 10 C 1.53194 * 109.31508 * 298.63451 * 9 8 6 11 11 N 1.46934 * 108.77301 * 54.63431 * 10 9 8 12 12 C 1.34765 * 120.62880 * 126.37110 * 11 10 9 13 13 O 1.21590 * 119.99953 * 185.13950 * 12 11 10 14 14 N 1.34779 * 120.00360 * 5.13508 * 12 11 10 15 15 C 1.46506 * 120.00182 * 175.05450 * 14 12 11 16 16 C 1.53000 * 109.46782 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47192 * 299.99826 * 16 15 14 18 18 C 1.52997 * 109.47714 * 60.00001 * 16 15 14 19 19 C 1.50695 * 109.46837 * 180.02562 * 16 15 14 20 20 H 1.08000 * 120.00562 * 2.49276 * 19 16 15 21 21 C 1.37879 * 120.00193 * 182.49932 * 19 16 15 22 22 N 1.31517 * 120.00301 * 188.75138 * 21 19 16 23 23 Si 1.86797 * 119.99856 * 8.74386 * 21 19 16 24 24 H 1.48500 * 109.47152 * 93.77030 * 23 21 19 25 25 H 1.48505 * 109.47123 * 213.77132 * 23 21 19 26 26 H 1.48498 * 109.47135 * 333.76674 * 23 21 19 27 27 C 1.46925 * 118.73783 * 306.64416 * 11 10 9 28 28 H 1.09002 * 109.47472 * 184.92210 * 1 2 3 29 29 H 1.09001 * 109.47289 * 304.92347 * 1 2 3 30 30 H 1.09001 * 109.47000 * 64.92035 * 1 2 3 31 31 H 0.96996 * 119.99962 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.45566 * 61.32442 * 8 6 3 33 33 H 1.09008 * 109.45452 * 301.37114 * 8 6 3 34 34 H 1.08995 * 109.49600 * 178.68045 * 9 8 6 35 35 H 1.09004 * 109.49373 * 58.58633 * 9 8 6 36 36 H 1.08995 * 109.58312 * 294.85172 * 10 9 8 37 37 H 1.08997 * 109.70338 * 174.48859 * 10 9 8 38 38 H 0.97000 * 119.99555 * 355.05986 * 14 12 11 39 39 H 1.09002 * 109.46786 * 300.00083 * 15 14 12 40 40 H 1.08992 * 109.46746 * 60.00175 * 15 14 12 41 41 H 1.09007 * 109.46668 * 71.02084 * 17 16 15 42 42 H 1.08994 * 109.47230 * 191.01841 * 17 16 15 43 43 H 1.09001 * 109.47219 * 311.02586 * 17 16 15 44 44 H 1.09003 * 109.46813 * 59.99379 * 18 16 15 45 45 H 1.08992 * 109.47365 * 179.97438 * 18 16 15 46 46 H 1.09004 * 109.47006 * 300.00593 * 18 16 15 47 47 H 0.96993 * 120.00039 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58653 * 173.14698 * 27 11 10 49 49 H 1.08995 * 109.58732 * 293.57307 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7105 2.1751 -1.0634 5 8 3.6604 1.0493 -0.0382 6 6 1.8890 2.1901 1.5987 7 1 0.8115 2.3391 1.6688 8 6 2.3519 1.2698 2.7306 9 6 1.9814 1.8909 4.0792 10 6 2.6945 3.2384 4.2295 11 7 2.3685 4.0780 3.0686 12 6 1.8654 5.3168 3.2368 13 8 1.5125 5.9659 2.2711 14 7 1.7535 5.8364 4.4754 15 6 1.3090 7.2212 4.6515 16 6 1.2692 7.5582 6.1434 17 6 0.2952 6.6158 6.8533 18 6 2.6675 7.3914 6.7415 19 6 0.8115 8.9825 6.3245 20 1 0.5342 9.5742 5.4647 21 6 0.7467 9.5304 7.5881 22 7 0.1877 10.7074 7.7667 23 14 1.4527 8.6008 9.0465 24 1 2.8508 9.0411 9.2843 25 1 0.6340 8.8786 10.2540 26 1 1.4343 7.1437 8.7606 27 6 2.5957 3.5389 1.7208 28 1 -0.3634 -1.0239 0.0882 29 1 -0.3634 0.5883 0.8426 30 1 -0.3633 0.4356 -0.9308 31 1 1.9500 -0.8400 0.0004 32 1 3.4328 1.1410 2.6747 33 1 1.8652 0.2995 2.6316 34 1 2.2905 1.2240 4.8840 35 1 0.9030 2.0427 4.1258 36 1 3.7718 3.0787 4.2740 37 1 2.3601 3.7314 5.1423 38 1 1.9673 5.2933 5.2502 39 1 2.0032 7.8926 4.1460 40 1 0.3130 7.3401 4.2251 41 1 0.7224 5.6136 6.8921 42 1 0.1167 6.9741 7.8671 43 1 -0.6473 6.5880 6.3065 44 1 3.3615 8.0628 6.2356 45 1 2.6392 7.6319 7.8041 46 1 2.9983 6.3611 6.6103 47 1 0.1418 11.0926 8.6557 48 1 2.1941 4.2288 0.9788 49 1 3.6648 3.4042 1.5566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470462387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:27 Heat of formation + Delta-G solvation = -76.594657 kcal Electronic energy + Delta-G solvation = -30130.747969 eV Core-core repulsion = 26028.190653 eV Total energy + Delta-G solvation = -4102.557317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43960 -38.03099 -37.46788 -36.66755 -36.33172 -35.48445 -33.79754 -32.82969 -31.78294 -31.24906 -26.65926 -26.44912 -26.35489 -25.39932 -24.71710 -23.88052 -21.71323 -19.90089 -19.53327 -19.37285 -18.33625 -18.00863 -16.96995 -16.59729 -16.26061 -15.97165 -15.71075 -15.32733 -15.12959 -15.02724 -14.56672 -14.19429 -14.07522 -13.86995 -13.71299 -13.45069 -13.29143 -13.06390 -12.95512 -12.69909 -12.46602 -12.37078 -12.35835 -12.23729 -12.10226 -12.06019 -11.74950 -11.55653 -11.32389 -11.23655 -10.84042 -10.44372 -10.32069 -10.23808 -10.11529 -10.05829 -9.85047 -9.11657 -8.93850 -8.66557 -8.57244 -8.39128 -6.15451 -4.15141 -0.18056 2.27607 2.67613 3.21050 3.26776 3.29920 3.35061 3.41161 3.67427 3.93102 4.13674 4.21348 4.32671 4.42451 4.47989 4.53829 4.75298 4.94279 4.98784 5.05546 5.15382 5.22615 5.24088 5.27579 5.28803 5.33805 5.43069 5.47795 5.71603 5.77499 5.99517 6.04115 6.22357 6.30703 6.41804 6.43920 6.48730 6.56683 6.66869 6.76386 6.90705 7.01677 7.18578 7.38963 7.68776 8.13852 8.43685 8.78939 8.89055 9.46698 10.97675 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002412 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.583485 B =11607.621670 C =11924.837215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.618 3.382 4 O -0.948 6.948 5 O -0.953 6.953 6 C -0.610 4.610 7 H 0.142 0.858 8 C -0.100 4.100 9 C -0.127 4.127 10 C 0.107 3.893 11 N -0.627 5.627 12 C 0.703 3.297 13 O -0.588 6.588 14 N -0.736 5.736 15 C 0.158 3.842 16 C 0.028 3.972 17 C -0.140 4.140 18 C -0.146 4.146 19 C -0.510 4.510 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.881 3.119 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.242 1.242 27 C 0.149 3.851 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.418 0.582 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.392 0.608 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.110 0.890 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -26.948 -8.852 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.709 3.291 4 O -0.938 6.938 5 O -0.943 6.943 6 C -0.720 4.720 7 H 0.160 0.840 8 C -0.138 4.138 9 C -0.167 4.167 10 C -0.016 4.016 11 N -0.366 5.366 12 C 0.404 3.596 13 O -0.466 6.466 14 N -0.392 5.392 15 C 0.035 3.965 16 C 0.027 3.973 17 C -0.197 4.197 18 C -0.203 4.203 19 C -0.548 4.548 20 H 0.095 0.905 21 C -0.129 4.129 22 N -0.531 5.531 23 Si 0.713 3.287 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.168 1.168 27 C 0.023 3.977 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.252 0.748 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.128 0.872 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.651 -25.749 -10.133 27.911 hybrid contribution 0.203 -1.011 2.039 2.285 sum 3.855 -26.760 -8.094 28.222 Atomic orbital electron populations 1.21512 0.78559 1.04127 1.02251 1.55367 1.16052 1.24518 1.92138 1.04970 0.73793 0.73934 0.76430 1.93629 1.78497 1.72003 1.49647 1.93604 1.32549 1.81178 1.86983 1.30895 1.11777 1.08188 1.21111 0.84037 1.21285 1.02516 0.96737 0.93257 1.21845 1.01640 0.96462 0.96715 1.21677 1.00105 0.91173 0.88657 1.47074 1.69044 1.14658 1.05794 1.15929 0.78473 0.80674 0.84511 1.90917 1.55669 1.60571 1.39440 1.45678 1.71839 1.16224 1.05488 1.21432 0.99256 0.77869 0.97905 1.18735 0.91799 0.96859 0.89923 1.22311 0.99617 0.96476 1.01337 1.22363 0.99280 0.98371 1.00254 1.20733 1.45000 0.94445 0.94627 0.90453 1.24993 0.94395 0.94823 0.98677 1.69918 1.42793 1.17535 1.22881 0.87381 0.78265 0.81433 0.81572 1.21511 1.23197 1.16809 1.20904 0.99074 0.91026 0.86728 0.89921 0.92073 0.91358 0.74832 0.89698 0.90249 0.89847 0.90909 0.90916 0.89807 0.77116 0.92082 0.91930 0.96164 0.92571 0.93433 0.92754 0.93914 0.95435 0.92571 0.87181 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.01 59.85 0.66 0.99 16 2 N -1.12 -5.90 5.74 -16.63 -0.10 -6.00 16 3 S 2.62 22.70 4.90 -107.50 -0.53 22.17 16 4 O -0.95 -12.02 17.80 -57.54 -1.02 -13.04 16 5 O -0.95 -10.56 17.99 -57.54 -1.04 -11.59 16 6 C -0.61 -4.75 2.80 -26.83 -0.08 -4.82 16 7 H 0.14 0.99 7.65 -51.92 -0.40 0.60 16 8 C -0.10 -0.58 5.05 -26.69 -0.13 -0.71 16 9 C -0.13 -0.81 6.08 -26.61 -0.16 -0.97 16 10 C 0.11 0.93 6.39 -3.71 -0.02 0.91 16 11 N -0.63 -7.70 2.98 -178.76 -0.53 -8.24 16 12 C 0.70 11.74 8.30 -86.93 -0.72 11.01 16 13 O -0.59 -12.18 15.77 5.29 0.08 -12.10 16 14 N -0.74 -12.02 4.91 -65.23 -0.32 -12.34 16 15 C 0.16 3.15 4.48 -4.04 -0.02 3.13 16 16 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 17 C -0.14 -2.76 7.40 37.16 0.27 -2.48 16 18 C -0.15 -2.88 7.51 37.16 0.28 -2.60 16 19 C -0.51 -13.54 8.62 -34.44 -0.30 -13.84 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.02 5.38 -17.82 -0.10 1.92 16 22 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 23 Si 0.88 20.57 22.80 -169.99 -3.88 16.69 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.24 -5.04 4.35 56.52 0.25 -4.80 16 27 C 0.15 1.63 5.71 -3.93 -0.02 1.61 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.18 7.54 -51.93 -0.39 -0.21 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.42 1.43 8.92 -34.46 -0.31 1.12 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.28 7.88 -51.92 -0.41 -0.13 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.72 5.64 -51.93 -0.29 0.43 16 38 H 0.39 5.47 3.77 -40.82 -0.15 5.31 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.02 0.32 7.16 -51.93 -0.37 -0.05 16 42 H 0.06 1.18 4.17 -51.93 -0.22 0.96 16 43 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.89 2.36 -51.93 -0.12 0.77 16 46 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.11 1.42 6.99 -51.93 -0.36 1.05 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -36.94 379.42 -8.99 -45.93 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.74 Total: 3.95 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.41 Total: -5.31 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.17 Total: -52.42 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.98 Total: -36.74 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -3.88 Total: 16.69 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.53 Total: 22.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.94 -8.99 -45.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470462387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.667 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds