Wall clock time and date at job start Wed Apr 1 2020 04:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 7 7 O 1.21282 * 120.00541 * 35.00005 * 6 4 3 8 8 N 1.34782 * 119.99683 * 214.99744 * 6 4 3 9 9 C 1.46507 * 119.99680 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.46937 * 274.99518 * 9 8 6 11 11 C 1.53002 * 109.47108 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46834 * 60.00350 * 11 10 9 13 13 N 1.46496 * 109.46837 * 179.97438 * 12 11 10 14 14 C 1.36936 * 120.00445 * 274.99928 * 13 12 11 15 15 H 1.08008 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00202 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00154 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47405 * 89.99285 * 18 16 14 20 20 H 1.48495 * 109.47111 * 209.99693 * 18 16 14 21 21 H 1.48503 * 109.46939 * 329.99378 * 18 16 14 22 22 C 1.53001 * 109.47237 * 300.00138 * 12 11 10 23 23 C 1.52995 * 109.47150 * 59.99725 * 22 12 11 24 24 S 1.81403 * 109.47108 * 294.99560 * 4 3 2 25 25 N 1.65594 * 104.45222 * 300.00451 * 24 4 3 26 26 O 1.42100 * 110.53903 * 51.62600 * 24 4 3 27 27 O 1.42091 * 110.54513 * 188.37756 * 24 4 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 0.96996 * 119.99831 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.47014 * 34.99983 * 9 8 6 37 37 H 1.08999 * 109.47683 * 300.00628 * 10 9 8 38 38 H 1.09008 * 109.46899 * 60.00415 * 10 9 8 39 39 H 1.08998 * 109.46834 * 300.00459 * 11 10 9 40 40 H 1.08999 * 109.47107 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46854 * 60.00164 * 12 11 10 42 42 H 0.97006 * 119.99800 * 95.00320 * 13 12 11 43 43 H 0.96998 * 120.00233 * 180.02562 * 17 16 14 44 44 H 1.09007 * 109.46628 * 300.00385 * 22 12 11 45 45 H 1.08991 * 109.47013 * 180.02562 * 22 12 11 46 46 H 1.08996 * 109.47127 * 179.97438 * 23 22 12 47 47 H 1.08998 * 109.47291 * 60.00400 * 23 22 12 48 48 H 0.97004 * 120.00347 * 149.99591 * 25 24 4 49 49 H 0.97007 * 119.99875 * 330.00037 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0723 2.8578 -0.1245 7 8 3.4636 3.7655 0.4013 8 7 5.1981 3.1149 -0.8194 9 6 5.6868 4.4909 -0.9393 10 6 4.9823 5.1821 -2.1083 11 6 5.4930 6.6189 -2.2339 12 6 7.0022 6.6035 -2.4851 13 7 7.4911 7.9792 -2.6060 14 6 7.4295 8.6243 -3.8124 15 1 7.0201 8.1189 -4.6747 16 6 7.8923 9.9279 -3.9267 17 7 7.8335 10.5478 -5.0864 18 14 8.5997 10.8022 -2.4353 19 1 10.0619 10.5529 -2.3627 20 1 8.3516 12.2615 -2.5530 21 1 7.9481 10.2870 -1.2043 22 6 7.7068 5.9121 -1.3161 23 6 7.1959 4.4755 -1.1905 24 16 4.1753 0.7194 1.5491 25 7 3.5576 1.7002 2.7317 26 8 3.5626 -0.5411 1.7839 27 8 5.5826 0.8817 1.6589 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.6852 2.3888 -1.2395 36 1 5.4770 5.0325 -0.0170 37 1 5.1919 4.6404 -3.0306 38 1 3.9070 5.1927 -1.9296 39 1 5.2836 7.1608 -1.3117 40 1 4.9908 7.1115 -3.0665 41 1 7.2115 6.0615 -3.4074 42 1 7.8585 8.4331 -1.8315 43 1 8.1573 11.4586 -5.1664 44 1 7.4973 6.4542 -0.3939 45 1 8.7819 5.9016 -1.4949 46 1 7.6982 3.9828 -0.3580 47 1 7.4053 3.9334 -2.1127 48 1 3.3543 1.3355 3.6072 49 1 3.3990 2.6396 2.5488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480407255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:54 Heat of formation + Delta-G solvation = -118.871008 kcal Electronic energy + Delta-G solvation = -29578.673469 eV Core-core repulsion = 25474.282912 eV Total energy + Delta-G solvation = -4104.390557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.55563 -38.36850 -37.79935 -36.50137 -35.90511 -35.16206 -33.53434 -33.23459 -31.54760 -30.75923 -30.54734 -27.89879 -25.41634 -23.34802 -22.57119 -21.89016 -21.37177 -20.82542 -20.05030 -19.69823 -18.44013 -18.21183 -17.52595 -17.21263 -16.84840 -16.40034 -15.79390 -15.20355 -15.12444 -14.75652 -14.48340 -14.31373 -14.23118 -13.90833 -13.57948 -13.27308 -13.00545 -12.92707 -12.71419 -12.67207 -12.59366 -12.55391 -12.24947 -12.07451 -11.94783 -11.82762 -11.47857 -11.47424 -11.22393 -10.95712 -10.90945 -10.82783 -10.79616 -10.64987 -10.33612 -10.28980 -10.09603 -9.89040 -9.58680 -9.23682 -8.90736 -7.27558 -5.77795 -3.13273 -0.41623 2.05561 2.26142 2.63522 3.06741 3.37315 3.40326 3.45198 3.52706 3.89396 4.23593 4.36405 4.58601 4.60818 4.68157 4.74363 4.88940 5.03936 5.04670 5.18100 5.37473 5.40601 5.42353 5.44425 5.48551 5.55475 5.59744 5.67385 5.68766 5.72627 5.78688 5.84929 5.97545 6.00494 6.09971 6.13456 6.27749 6.35275 6.42561 6.56654 6.68472 6.84373 7.00291 7.05150 7.67495 7.98595 8.41470 9.20177 9.92921 10.12741 11.40573 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.002229 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.887364 B =12556.172405 C =13151.161879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.168 4.168 3 C -0.086 4.086 4 C -0.619 4.619 5 H 0.160 0.840 6 C 0.530 3.470 7 O -0.521 6.521 8 N -0.708 5.708 9 C 0.142 3.858 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.181 3.819 13 N -0.749 5.749 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.124 4.124 23 C -0.122 4.122 24 S 2.630 3.370 25 N -1.243 6.243 26 O -0.947 6.947 27 O -0.947 6.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.421 0.579 49 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.458 -24.503 13.915 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.205 4.205 3 C -0.125 4.125 4 C -0.729 4.729 5 H 0.177 0.823 6 C 0.312 3.688 7 O -0.397 6.397 8 N -0.357 5.357 9 C 0.039 3.961 10 C -0.163 4.163 11 C -0.173 4.173 12 C 0.072 3.928 13 N -0.391 5.391 14 C -0.372 4.372 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.583 5.583 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.160 4.160 24 S 2.717 3.283 25 N -0.919 5.919 26 O -0.936 6.936 27 O -0.936 6.936 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.252 0.748 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.271 -24.640 13.990 30.494 hybrid contribution 0.189 1.124 0.412 1.212 sum -11.082 -23.517 14.402 29.720 Atomic orbital electron populations 1.21690 0.94823 1.02056 1.02010 1.22238 0.97550 0.95375 1.05359 1.21298 0.86238 0.99089 1.05846 1.30740 1.09997 1.06617 1.25568 0.82278 1.19189 0.81385 0.88147 0.80067 1.90761 1.56259 1.45331 1.47340 1.46179 1.25642 1.11105 1.52819 1.21278 0.94062 0.80306 1.00495 1.21906 0.99753 0.97480 0.97205 1.22194 0.99286 0.93638 1.02203 1.20222 0.90766 0.86134 0.95705 1.42793 1.75149 1.11492 1.09696 1.19068 1.34679 0.95863 0.87586 0.89260 1.24680 1.01312 0.96873 0.96394 1.69701 1.52697 1.12950 1.22905 0.86544 0.79268 0.79315 0.83368 1.21117 1.21815 1.20291 1.21795 1.00728 0.93878 0.99895 1.21769 0.93302 0.98644 1.02311 1.04507 0.74561 0.73895 0.75375 1.53065 1.86225 1.24627 1.28010 1.93555 1.77059 1.39926 1.83065 1.93662 1.29731 1.85868 1.84329 0.92441 0.92723 0.92251 0.91351 0.87623 0.89356 0.89424 0.76297 0.88954 0.91949 0.92116 0.92524 0.91214 0.92656 0.80669 0.93086 0.91996 0.91073 0.91244 0.91161 0.74818 0.74849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.17 -1.05 5.65 -26.74 -0.15 -1.21 16 3 C -0.09 -0.56 4.22 -26.73 -0.11 -0.68 16 4 C -0.62 -4.15 2.83 -27.88 -0.08 -4.23 16 5 H 0.16 0.57 8.11 -51.93 -0.42 0.15 16 6 C 0.53 5.10 6.47 -10.98 -0.07 5.03 16 7 O -0.52 -6.34 14.92 5.56 0.08 -6.26 16 8 N -0.71 -6.57 5.08 -53.80 -0.27 -6.85 16 9 C 0.14 1.65 2.46 -67.93 -0.17 1.48 16 10 C -0.12 -1.64 5.49 -26.73 -0.15 -1.79 16 11 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 12 C 0.18 3.27 2.77 -67.93 -0.19 3.08 16 13 N -0.75 -17.24 4.93 -53.43 -0.26 -17.50 16 14 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 16 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 17 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 18 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 22 C -0.12 -1.78 5.39 -26.73 -0.14 -1.92 16 23 C -0.12 -1.36 5.39 -26.73 -0.14 -1.51 16 24 S 2.63 20.66 5.46 -107.50 -0.59 20.07 16 25 N -1.24 -7.86 8.91 60.35 0.54 -7.33 16 26 O -0.95 -8.86 14.89 -57.54 -0.86 -9.72 16 27 O -0.95 -10.60 18.01 -57.54 -1.04 -11.64 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.77 4.90 -51.93 -0.25 0.51 16 33 H 0.09 0.56 7.63 -51.93 -0.40 0.16 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 2.67 8.58 -40.82 -0.35 2.32 16 36 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.42 1.83 8.96 -34.47 -0.31 1.53 16 49 H 0.42 2.73 7.54 -34.47 -0.26 2.47 16 LS Contribution 395.88 15.07 5.97 5.97 Total: -1.00 -36.06 395.88 -9.73 -45.79 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.12 Total: 10.05 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.24 Total: -11.46 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.78 Total: -60.10 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.81 Total: -27.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: 20.66 SS G_CDS: -0.59 Total: 20.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.06 -9.73 -45.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480407255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.081 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds