Wall clock time and date at job start Wed Apr 1 2020 04:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 7 7 O 1.21282 * 120.00541 * 35.00005 * 6 4 3 8 8 N 1.34782 * 119.99683 * 214.99744 * 6 4 3 9 9 C 1.46507 * 119.99680 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.46937 * 274.99518 * 9 8 6 11 11 C 1.53002 * 109.47108 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46834 * 60.00350 * 11 10 9 13 13 N 1.46496 * 109.46837 * 179.97438 * 12 11 10 14 14 C 1.36936 * 120.00445 * 274.99928 * 13 12 11 15 15 H 1.08008 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00202 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00154 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47405 * 89.99285 * 18 16 14 20 20 H 1.48495 * 109.47111 * 209.99693 * 18 16 14 21 21 H 1.48503 * 109.46939 * 329.99378 * 18 16 14 22 22 C 1.53001 * 109.47237 * 300.00138 * 12 11 10 23 23 C 1.52995 * 109.47150 * 59.99725 * 22 12 11 24 24 S 1.81403 * 109.47108 * 294.99560 * 4 3 2 25 25 N 1.65594 * 104.45222 * 300.00451 * 24 4 3 26 26 O 1.42100 * 110.53903 * 51.62600 * 24 4 3 27 27 O 1.42091 * 110.54513 * 188.37756 * 24 4 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 0.96996 * 119.99831 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.47014 * 34.99983 * 9 8 6 37 37 H 1.08999 * 109.47683 * 300.00628 * 10 9 8 38 38 H 1.09008 * 109.46899 * 60.00415 * 10 9 8 39 39 H 1.08998 * 109.46834 * 300.00459 * 11 10 9 40 40 H 1.08999 * 109.47107 * 180.02562 * 11 10 9 41 41 H 1.08999 * 109.46854 * 60.00164 * 12 11 10 42 42 H 0.97006 * 119.99800 * 95.00320 * 13 12 11 43 43 H 0.96998 * 120.00233 * 180.02562 * 17 16 14 44 44 H 1.09007 * 109.46628 * 300.00385 * 22 12 11 45 45 H 1.08991 * 109.47013 * 180.02562 * 22 12 11 46 46 H 1.08996 * 109.47127 * 179.97438 * 23 22 12 47 47 H 1.08998 * 109.47291 * 60.00400 * 23 22 12 48 48 H 0.97004 * 120.00347 * 149.99591 * 25 24 4 49 49 H 0.97007 * 119.99875 * 330.00037 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0723 2.8578 -0.1245 7 8 3.4636 3.7655 0.4013 8 7 5.1981 3.1149 -0.8194 9 6 5.6868 4.4909 -0.9393 10 6 4.9823 5.1821 -2.1083 11 6 5.4930 6.6189 -2.2339 12 6 7.0022 6.6035 -2.4851 13 7 7.4911 7.9792 -2.6060 14 6 7.4295 8.6243 -3.8124 15 1 7.0201 8.1189 -4.6747 16 6 7.8923 9.9279 -3.9267 17 7 7.8335 10.5478 -5.0864 18 14 8.5997 10.8022 -2.4353 19 1 10.0619 10.5529 -2.3627 20 1 8.3516 12.2615 -2.5530 21 1 7.9481 10.2870 -1.2043 22 6 7.7068 5.9121 -1.3161 23 6 7.1959 4.4755 -1.1905 24 16 4.1753 0.7194 1.5491 25 7 3.5576 1.7002 2.7317 26 8 3.5626 -0.5411 1.7839 27 8 5.5826 0.8817 1.6589 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.6852 2.3888 -1.2395 36 1 5.4770 5.0325 -0.0170 37 1 5.1919 4.6404 -3.0306 38 1 3.9070 5.1927 -1.9296 39 1 5.2836 7.1608 -1.3117 40 1 4.9908 7.1115 -3.0665 41 1 7.2115 6.0615 -3.4074 42 1 7.8585 8.4331 -1.8315 43 1 8.1573 11.4586 -5.1664 44 1 7.4973 6.4542 -0.3939 45 1 8.7819 5.9016 -1.4949 46 1 7.6982 3.9828 -0.3580 47 1 7.4053 3.9334 -2.1127 48 1 3.3543 1.3355 3.6072 49 1 3.3990 2.6396 2.5488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480407255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:53 Heat of formation + Delta-G solvation = -148.392189 kcal Electronic energy + Delta-G solvation = -29579.953603 eV Core-core repulsion = 25474.282912 eV Total energy + Delta-G solvation = -4105.670691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38267 -39.51771 -38.48202 -37.20394 -36.71111 -36.28864 -34.75180 -34.04677 -33.02119 -31.78728 -31.69409 -29.23303 -26.17754 -25.02251 -23.71237 -22.58802 -22.38535 -21.73323 -21.16365 -20.55641 -19.61169 -19.01475 -18.77366 -17.91193 -17.58300 -17.17071 -16.78171 -16.47882 -16.17002 -15.84061 -15.49432 -15.20617 -15.04211 -14.96258 -14.76290 -14.61688 -14.35554 -13.85877 -13.63068 -13.52808 -13.40867 -13.33196 -13.28931 -13.16870 -13.10978 -12.91173 -12.50000 -12.40678 -12.33555 -12.06512 -12.01047 -11.98361 -11.93097 -11.79262 -11.49203 -11.36419 -11.27378 -11.22772 -10.97491 -10.87630 -10.15050 -9.28914 -8.01193 -5.33854 -1.03520 1.32153 1.38538 1.41585 1.48840 1.62904 1.94468 2.47568 2.49513 2.91650 3.29776 3.31437 3.59834 3.62903 3.74294 3.83669 3.89142 4.13199 4.21972 4.24677 4.31742 4.34907 4.50802 4.57226 4.58580 4.61291 4.71186 4.82226 4.91468 4.93984 4.96411 5.08315 5.13504 5.15032 5.23381 5.25113 5.26704 5.34550 5.37560 5.49618 5.50897 5.60497 5.79488 6.23574 6.23708 6.32362 6.96555 7.10034 7.87511 8.05747 9.20488 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.002229 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.887364 B =12556.172405 C =13151.161879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.607 4.607 5 H 0.195 0.805 6 C 0.527 3.473 7 O -0.547 6.547 8 N -0.701 5.701 9 C 0.148 3.852 10 C -0.113 4.113 11 C -0.125 4.125 12 C 0.174 3.826 13 N -0.754 5.754 14 C -0.225 4.225 15 H 0.056 0.944 16 C -0.069 4.069 17 N -0.986 5.986 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.299 1.299 21 H -0.253 1.253 22 C -0.117 4.117 23 C -0.113 4.113 24 S 2.644 3.356 25 N -1.239 6.239 26 O -0.962 6.962 27 O -0.980 6.980 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.430 0.570 49 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 -26.496 15.694 32.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.206 4.206 3 C -0.126 4.126 4 C -0.718 4.718 5 H 0.212 0.788 6 C 0.310 3.690 7 O -0.425 6.425 8 N -0.352 5.352 9 C 0.044 3.956 10 C -0.152 4.152 11 C -0.165 4.165 12 C 0.066 3.934 13 N -0.396 5.396 14 C -0.356 4.356 15 H 0.074 0.926 16 C -0.260 4.260 17 N -0.637 5.637 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.226 1.226 21 H -0.177 1.177 22 C -0.156 4.156 23 C -0.151 4.151 24 S 2.732 3.268 25 N -0.917 5.917 26 O -0.951 6.951 27 O -0.969 6.969 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.198 0.802 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.262 0.738 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.167 -26.725 15.823 33.005 hybrid contribution 0.048 1.678 -0.208 1.691 sum -11.119 -25.048 15.614 31.541 Atomic orbital electron populations 1.21729 0.94630 1.02405 1.02192 1.22243 0.97806 0.95038 1.05509 1.21331 0.85940 0.99370 1.05926 1.30674 1.10085 1.04979 1.26036 0.78797 1.19569 0.81034 0.88960 0.79421 1.90758 1.56969 1.46506 1.48280 1.46027 1.25737 1.10576 1.52867 1.21024 0.94259 0.81398 0.98968 1.21769 0.99525 0.95258 0.98688 1.22005 0.98067 0.95946 1.00519 1.20492 0.91767 0.83880 0.97252 1.42849 1.75435 1.13281 1.08074 1.19026 1.32467 0.95744 0.88348 0.92625 1.25513 1.02879 0.97991 0.99573 1.69886 1.54949 1.13286 1.25580 0.85402 0.78740 0.77274 0.80309 1.20318 1.22626 1.17714 1.21695 1.00457 0.95526 0.97889 1.21707 0.92736 0.96626 1.04070 1.03917 0.73717 0.73570 0.75582 1.52930 1.85933 1.24508 1.28361 1.93544 1.77093 1.41036 1.83471 1.93626 1.31893 1.86376 1.85021 0.92406 0.92466 0.91858 0.90186 0.88476 0.89390 0.89370 0.74445 0.90087 0.90925 0.92527 0.93020 0.94433 0.93594 0.80246 0.93482 0.91675 0.90814 0.89131 0.89553 0.73815 0.74715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.17 -1.76 5.65 30.59 0.17 -1.58 16 3 C -0.09 -0.95 4.22 30.59 0.13 -0.82 16 4 C -0.61 -6.52 2.83 29.85 0.08 -6.43 16 5 H 0.19 0.65 8.11 -2.40 -0.02 0.63 16 6 C 0.53 8.84 6.47 87.66 0.57 9.41 16 7 O -0.55 -12.36 14.92 -3.04 -0.05 -12.41 16 8 N -0.70 -10.90 5.08 -442.52 -2.25 -13.15 16 9 C 0.15 3.06 2.46 44.99 0.11 3.17 16 10 C -0.11 -2.83 5.49 30.59 0.17 -2.66 16 11 C -0.12 -4.15 5.50 30.60 0.17 -3.98 16 12 C 0.17 6.14 2.77 44.99 0.12 6.26 16 13 N -0.75 -34.37 4.93 -322.94 -1.59 -35.96 16 14 C -0.22 -12.70 10.41 84.03 0.87 -11.83 16 15 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 17 N -0.99 -63.50 13.97 21.65 0.30 -63.19 16 18 Si 0.96 45.61 27.74 68.60 1.90 47.51 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 21 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 22 C -0.12 -3.07 5.39 30.59 0.16 -2.91 16 23 C -0.11 -2.15 5.39 30.59 0.16 -1.99 16 24 S 2.64 36.60 5.46 -56.49 -0.31 36.29 16 25 N -1.24 -13.89 8.91 37.02 0.33 -13.56 16 26 O -0.96 -16.42 14.89 -127.65 -1.90 -18.32 16 27 O -0.98 -20.14 18.01 -127.65 -2.30 -22.44 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.23 4.90 -2.39 -0.01 1.22 16 33 H 0.09 0.97 7.63 -2.39 -0.02 0.95 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.42 3.94 8.58 -92.71 -0.80 3.15 16 36 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 42 H 0.36 15.99 5.66 -92.70 -0.52 15.46 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.43 3.20 8.96 -96.74 -0.87 2.33 16 49 H 0.42 4.90 7.54 -96.74 -0.73 4.17 16 Total: -1.00 -79.44 395.88 -3.93 -83.37 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -1.99 Total: 29.58 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 3.91 Total: -17.73 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -3.21 Total: -125.86 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -4.25 Total: -53.17 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: 36.60 SS G_CDS: -0.31 Total: 36.29 kcal Total: -79.44 -3.93 -83.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480407255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.021 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds