Wall clock time and date at job start Wed Apr 1 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00071 * 2 1 4 4 O 1.21283 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00015 * 359.97438 * 3 2 1 6 6 S 1.81390 * 109.47058 * 180.02562 * 5 3 2 7 7 O 1.42100 * 110.54534 * 282.17919 * 6 5 3 8 8 O 1.42104 * 110.54724 * 58.93066 * 6 5 3 9 9 N 1.65602 * 104.44854 * 170.55578 * 6 5 3 10 10 C 1.46495 * 120.00244 * 67.11726 * 9 6 5 11 11 C 1.52999 * 109.47486 * 72.95261 * 10 9 6 12 12 C 1.53003 * 109.47394 * 192.95767 * 10 9 6 13 13 C 1.53004 * 109.46780 * 312.95278 * 10 9 6 14 14 C 1.46494 * 120.00272 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.92162 * 190.06618 * 14 2 1 16 16 C 1.55159 * 111.00584 * 66.15951 * 14 2 1 17 17 C 1.54322 * 102.94402 * 277.43016 * 16 14 2 18 18 N 1.47023 * 107.27012 * 337.80551 * 17 16 14 19 19 C 1.36932 * 125.64770 * 178.98496 * 18 17 16 20 20 H 1.08001 * 120.00058 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00022 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99945 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46777 * 89.99691 * 23 21 19 25 25 H 1.48500 * 109.46698 * 209.99331 * 23 21 19 26 26 H 1.48492 * 109.47289 * 329.99750 * 23 21 19 27 27 C 1.47424 * 108.70389 * 358.93851 * 18 17 16 28 28 H 1.08996 * 109.47269 * 271.46695 * 1 2 3 29 29 H 1.08999 * 109.46570 * 31.47082 * 1 2 3 30 30 H 1.09004 * 109.46735 * 151.46286 * 1 2 3 31 31 H 1.08998 * 109.47061 * 300.00734 * 5 3 2 32 32 H 1.08998 * 109.46662 * 60.00592 * 5 3 2 33 33 H 0.97008 * 120.00072 * 247.11643 * 9 6 5 34 34 H 1.09004 * 109.46657 * 52.65094 * 11 10 9 35 35 H 1.08994 * 109.47541 * 172.64987 * 11 10 9 36 36 H 1.08998 * 109.46891 * 292.65461 * 11 10 9 37 37 H 1.08998 * 109.47131 * 59.99703 * 12 10 9 38 38 H 1.08995 * 109.47172 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.46692 * 299.99701 * 12 10 9 40 40 H 1.08997 * 109.46891 * 69.55298 * 13 10 9 41 41 H 1.09001 * 109.47004 * 189.54866 * 13 10 9 42 42 H 1.08997 * 109.47200 * 309.54783 * 13 10 9 43 43 H 1.08997 * 110.71408 * 35.79322 * 16 14 2 44 44 H 1.09004 * 110.72167 * 159.06436 * 16 14 2 45 45 H 1.09002 * 109.88186 * 97.22105 * 17 16 14 46 46 H 1.08996 * 109.88360 * 218.38582 * 17 16 14 47 47 H 0.96992 * 120.00471 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.36972 * 265.29083 * 27 18 17 49 49 H 1.09000 * 110.36816 * 142.96849 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5641 3.8511 -0.0012 7 8 3.1016 4.0483 1.2994 8 8 3.4102 3.7834 -1.1409 9 7 1.6303 5.1930 -0.2649 10 6 0.6687 5.6276 0.7512 11 6 1.4194 6.2450 1.9329 12 6 -0.2763 6.6684 0.1473 13 6 -0.1414 4.4230 1.2349 14 6 2.1975 -1.2686 0.0006 15 1 3.2603 -1.1044 0.1785 16 6 1.9686 -2.0437 -1.3240 17 6 0.6211 -2.7550 -1.0798 18 7 0.4330 -2.8461 0.3755 19 6 -0.6514 -3.3937 1.0073 20 1 -0.6949 -3.4131 2.0863 21 6 -1.6948 -3.9241 0.2610 22 7 -1.6421 -3.9001 -1.0539 23 14 -3.1739 -4.6718 1.1230 24 1 -4.1987 -3.6210 1.3488 25 1 -3.7475 -5.7490 0.2768 26 1 -2.7512 -5.2398 2.4283 27 6 1.6057 -2.2511 1.0419 28 1 -0.3633 0.0263 1.0273 29 1 -0.3632 0.8765 -0.5365 30 1 -0.3633 -0.9029 -0.4910 31 1 0.7590 2.5299 -0.8907 32 1 0.7585 2.5303 0.8892 33 1 1.7200 5.6914 -1.0924 34 1 2.0958 7.0186 1.5693 35 1 0.7042 6.6850 2.6278 36 1 1.9930 5.4713 2.4431 37 1 -0.8111 6.2285 -0.6944 38 1 -0.9920 6.9913 0.9033 39 1 0.3008 7.5264 -0.1972 40 1 0.5025 3.7610 1.8138 41 1 -0.9653 4.7668 1.8603 42 1 -0.5385 3.8834 0.3752 43 1 1.8943 -1.3551 -2.1656 44 1 2.7643 -2.7704 -1.4880 45 1 -0.1893 -2.1762 -1.5228 46 1 0.6456 -3.7546 -1.5137 47 1 -2.3714 -4.2703 -1.5754 48 1 2.3332 -3.0237 1.2908 49 1 1.2999 -1.7136 1.9395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481751528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:57 Heat of formation + Delta-G solvation = -58.788047 kcal Electronic energy + Delta-G solvation = -30746.028468 eV Core-core repulsion = 26644.243304 eV Total energy + Delta-G solvation = -4101.785164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.06249 -38.47059 -37.66689 -36.97369 -35.93690 -34.47192 -32.45916 -31.30742 -30.77528 -29.28543 -28.01090 -27.67887 -27.39044 -26.10481 -24.34221 -21.48304 -20.83354 -20.16523 -19.39498 -18.77878 -18.01405 -17.10206 -16.95188 -16.81732 -16.37966 -15.74134 -15.58560 -14.97010 -14.73467 -14.61188 -14.21920 -13.94176 -13.91488 -13.57702 -13.28805 -12.95779 -12.84351 -12.59049 -12.41620 -12.18962 -12.14372 -12.07974 -12.02041 -11.92105 -11.82873 -11.80565 -11.76897 -11.63183 -11.02497 -11.01116 -10.97377 -10.93661 -10.85723 -10.44123 -10.21863 -10.04471 -9.90623 -9.74657 -9.66090 -8.78185 -8.34545 -6.95558 -5.83310 -3.17516 0.08112 2.50590 2.57952 3.06233 3.31226 3.38308 3.39556 3.74819 4.05680 4.19271 4.34242 4.39469 4.39768 4.57256 4.73216 4.88072 5.01288 5.12149 5.18728 5.28233 5.31571 5.36575 5.38209 5.47497 5.55421 5.56453 5.59675 5.64417 5.69867 5.80696 5.94906 5.98530 6.10531 6.16513 6.25166 6.36544 6.46623 6.53647 6.60109 6.71188 6.87046 7.42576 7.46857 7.56333 7.71737 8.08611 8.11559 9.09624 9.69099 10.34787 11.27944 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.003040 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.926050 B = 9207.273350 C =10247.507689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.572 5.572 3 C 0.536 3.464 4 O -0.551 6.551 5 C -0.685 4.685 6 S 2.646 3.354 7 O -0.942 6.942 8 O -0.943 6.943 9 N -1.115 6.115 10 C 0.172 3.828 11 C -0.177 4.177 12 C -0.150 4.150 13 C -0.202 4.202 14 C 0.118 3.882 15 H 0.103 0.897 16 C -0.157 4.157 17 C 0.173 3.827 18 N -0.604 5.604 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.127 3.873 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.253 0.747 48 H 0.035 0.965 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 19.948 1.319 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.302 5.302 3 C 0.321 3.679 4 O -0.431 6.431 5 C -0.812 4.812 6 S 2.734 3.266 7 O -0.932 6.932 8 O -0.932 6.932 9 N -0.875 5.875 10 C 0.084 3.916 11 C -0.236 4.236 12 C -0.208 4.208 13 C -0.260 4.260 14 C 0.014 3.986 15 H 0.121 0.879 16 C -0.196 4.196 17 C 0.049 3.951 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.105 19.659 1.552 19.832 hybrid contribution -1.817 -0.549 -0.079 1.900 sum 0.288 19.110 1.473 19.168 Atomic orbital electron populations 1.22326 0.77916 1.05158 1.02751 1.47606 1.07990 1.04836 1.69799 1.19169 0.87055 0.84393 0.77237 1.90807 1.13047 1.87115 1.52138 1.31757 1.20433 1.14959 1.14056 1.04102 0.73857 0.73878 0.74731 1.93558 1.74915 1.83694 1.40992 1.93588 1.61977 1.85715 1.51959 1.56007 1.57482 1.45131 1.28875 1.20150 0.88515 0.94915 0.88023 1.22554 1.00903 1.02782 0.97364 1.22068 0.98953 0.98226 1.01603 1.22997 1.01872 0.98247 1.02842 1.22416 0.96305 0.82117 0.97716 0.87893 1.23298 1.01107 0.99072 0.96127 1.21252 0.90656 0.98409 0.84805 1.44572 1.17636 1.69584 1.01338 1.19031 0.94191 1.31561 0.90875 0.90434 1.24779 0.98675 1.01154 0.95606 1.69950 1.32662 1.50789 1.03507 0.86134 0.82651 0.78673 0.78374 1.21629 1.21701 1.20732 1.21865 0.90638 0.93272 0.94239 0.92385 0.92765 0.85957 0.82328 0.81370 0.74825 0.91896 0.91623 0.89430 0.91679 0.90940 0.91740 0.91235 0.89282 0.90496 0.91740 0.91028 0.93073 0.93669 0.93660 0.94770 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 9.12 59.85 0.55 1.51 16 2 N -0.57 -9.63 2.91 -171.48 -0.50 -10.12 16 3 C 0.54 8.83 7.69 -10.98 -0.08 8.74 16 4 O -0.55 -10.87 14.97 -1.24 -0.02 -10.89 16 5 C -0.68 -7.84 3.43 36.01 0.12 -7.72 16 6 S 2.65 33.84 4.31 -107.50 -0.46 33.37 16 7 O -0.94 -14.40 15.22 -57.54 -0.88 -15.28 16 8 O -0.94 -15.61 17.69 -61.90 -1.10 -16.71 16 9 N -1.12 -9.22 5.45 0.54 0.00 -9.22 16 10 C 0.17 1.21 1.12 -131.82 -0.15 1.06 16 11 C -0.18 -1.43 8.27 37.16 0.31 -1.12 16 12 C -0.15 -0.73 8.59 37.16 0.32 -0.41 16 13 C -0.20 -1.30 6.63 37.16 0.25 -1.05 16 14 C 0.12 2.15 3.63 -65.78 -0.24 1.91 16 15 H 0.10 1.85 7.07 -51.93 -0.37 1.48 16 16 C -0.16 -2.89 6.55 -24.90 -0.16 -3.05 16 17 C 0.17 3.86 4.29 -3.06 -0.01 3.85 16 18 N -0.60 -13.99 2.27 -170.07 -0.39 -14.38 16 19 C -0.23 -5.84 10.28 -15.06 -0.15 -5.99 16 20 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -25.07 10.31 55.49 0.57 -24.50 16 23 Si 0.91 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.13 2.50 6.41 -2.53 -0.02 2.49 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.66 6.50 -51.93 -0.34 0.32 16 30 H 0.12 2.38 3.86 -51.93 -0.20 2.18 16 31 H 0.16 1.32 7.32 -51.92 -0.38 0.94 16 32 H 0.17 1.52 4.63 -51.93 -0.24 1.28 16 33 H 0.42 2.66 8.61 -34.48 -0.30 2.37 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.90 6.02 -51.93 -0.31 0.59 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.51 5.64 -51.93 -0.29 0.22 16 41 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.08 0.41 6.88 -51.93 -0.36 0.05 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 1.22 5.71 -51.93 -0.30 0.93 16 46 H 0.05 1.14 7.51 -51.93 -0.39 0.75 16 47 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 48 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -34.21 380.92 -9.08 -43.29 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.67 Total: 2.94 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.63 Total: -0.04 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.31 Total: -58.22 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.99 Total: -42.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 33.84 SS G_CDS: -0.46 Total: 33.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.21 -9.08 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481751528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.498 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds