Wall clock time and date at job start Wed Apr 1 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00071 * 2 1 4 4 O 1.21283 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00015 * 359.97438 * 3 2 1 6 6 S 1.81390 * 109.47058 * 180.02562 * 5 3 2 7 7 O 1.42100 * 110.54534 * 282.17919 * 6 5 3 8 8 O 1.42104 * 110.54724 * 58.93066 * 6 5 3 9 9 N 1.65602 * 104.44854 * 170.55578 * 6 5 3 10 10 C 1.46495 * 120.00244 * 67.11726 * 9 6 5 11 11 C 1.52999 * 109.47486 * 72.95261 * 10 9 6 12 12 C 1.53003 * 109.47394 * 192.95767 * 10 9 6 13 13 C 1.53004 * 109.46780 * 312.95278 * 10 9 6 14 14 C 1.46494 * 120.00272 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.92162 * 190.06618 * 14 2 1 16 16 C 1.55159 * 111.00584 * 66.15951 * 14 2 1 17 17 C 1.54322 * 102.94402 * 277.43016 * 16 14 2 18 18 N 1.47023 * 107.27012 * 337.80551 * 17 16 14 19 19 C 1.36932 * 125.64770 * 178.98496 * 18 17 16 20 20 H 1.08001 * 120.00058 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00022 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99945 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46777 * 89.99691 * 23 21 19 25 25 H 1.48500 * 109.46698 * 209.99331 * 23 21 19 26 26 H 1.48492 * 109.47289 * 329.99750 * 23 21 19 27 27 C 1.47424 * 108.70389 * 358.93851 * 18 17 16 28 28 H 1.08996 * 109.47269 * 271.46695 * 1 2 3 29 29 H 1.08999 * 109.46570 * 31.47082 * 1 2 3 30 30 H 1.09004 * 109.46735 * 151.46286 * 1 2 3 31 31 H 1.08998 * 109.47061 * 300.00734 * 5 3 2 32 32 H 1.08998 * 109.46662 * 60.00592 * 5 3 2 33 33 H 0.97008 * 120.00072 * 247.11643 * 9 6 5 34 34 H 1.09004 * 109.46657 * 52.65094 * 11 10 9 35 35 H 1.08994 * 109.47541 * 172.64987 * 11 10 9 36 36 H 1.08998 * 109.46891 * 292.65461 * 11 10 9 37 37 H 1.08998 * 109.47131 * 59.99703 * 12 10 9 38 38 H 1.08995 * 109.47172 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.46692 * 299.99701 * 12 10 9 40 40 H 1.08997 * 109.46891 * 69.55298 * 13 10 9 41 41 H 1.09001 * 109.47004 * 189.54866 * 13 10 9 42 42 H 1.08997 * 109.47200 * 309.54783 * 13 10 9 43 43 H 1.08997 * 110.71408 * 35.79322 * 16 14 2 44 44 H 1.09004 * 110.72167 * 159.06436 * 16 14 2 45 45 H 1.09002 * 109.88186 * 97.22105 * 17 16 14 46 46 H 1.08996 * 109.88360 * 218.38582 * 17 16 14 47 47 H 0.96992 * 120.00471 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.36972 * 265.29083 * 27 18 17 49 49 H 1.09000 * 110.36816 * 142.96849 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5641 3.8511 -0.0012 7 8 3.1016 4.0483 1.2994 8 8 3.4102 3.7834 -1.1409 9 7 1.6303 5.1930 -0.2649 10 6 0.6687 5.6276 0.7512 11 6 1.4194 6.2450 1.9329 12 6 -0.2763 6.6684 0.1473 13 6 -0.1414 4.4230 1.2349 14 6 2.1975 -1.2686 0.0006 15 1 3.2603 -1.1044 0.1785 16 6 1.9686 -2.0437 -1.3240 17 6 0.6211 -2.7550 -1.0798 18 7 0.4330 -2.8461 0.3755 19 6 -0.6514 -3.3937 1.0073 20 1 -0.6949 -3.4131 2.0863 21 6 -1.6948 -3.9241 0.2610 22 7 -1.6421 -3.9001 -1.0539 23 14 -3.1739 -4.6718 1.1230 24 1 -4.1987 -3.6210 1.3488 25 1 -3.7475 -5.7490 0.2768 26 1 -2.7512 -5.2398 2.4283 27 6 1.6057 -2.2511 1.0419 28 1 -0.3633 0.0263 1.0273 29 1 -0.3632 0.8765 -0.5365 30 1 -0.3633 -0.9029 -0.4910 31 1 0.7590 2.5299 -0.8907 32 1 0.7585 2.5303 0.8892 33 1 1.7200 5.6914 -1.0924 34 1 2.0958 7.0186 1.5693 35 1 0.7042 6.6850 2.6278 36 1 1.9930 5.4713 2.4431 37 1 -0.8111 6.2285 -0.6944 38 1 -0.9920 6.9913 0.9033 39 1 0.3008 7.5264 -0.1972 40 1 0.5025 3.7610 1.8138 41 1 -0.9653 4.7668 1.8603 42 1 -0.5385 3.8834 0.3752 43 1 1.8943 -1.3551 -2.1656 44 1 2.7643 -2.7704 -1.4880 45 1 -0.1893 -2.1762 -1.5228 46 1 0.6456 -3.7546 -1.5137 47 1 -2.3714 -4.2703 -1.5754 48 1 2.3332 -3.0237 1.2908 49 1 1.2999 -1.7136 1.9395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481751528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:56 Heat of formation + Delta-G solvation = -83.738132 kcal Electronic energy + Delta-G solvation = -30747.110385 eV Core-core repulsion = 26644.243304 eV Total energy + Delta-G solvation = -4102.867081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.43790 -39.23160 -39.10823 -38.00301 -37.03242 -36.00106 -34.17851 -32.13737 -31.82716 -30.91187 -29.46764 -28.17874 -28.05246 -27.54746 -26.11068 -22.79829 -21.95251 -21.56346 -20.39669 -20.02296 -19.05078 -18.90393 -18.13582 -17.71665 -17.55231 -16.98406 -16.64243 -16.60352 -15.94385 -15.66214 -15.52529 -15.19508 -14.75104 -14.69563 -14.40017 -14.07724 -13.88345 -13.83527 -13.50889 -13.44916 -13.30701 -13.24484 -13.19742 -13.02482 -12.87975 -12.83021 -12.75644 -12.52482 -12.43107 -12.37399 -12.31635 -12.03901 -12.01605 -11.89115 -11.80536 -11.56927 -11.53039 -11.11268 -10.68587 -10.53966 -9.77562 -8.85296 -7.81335 -5.16306 -0.89754 1.25168 1.50063 1.52306 1.59701 1.65294 1.90123 2.52121 2.74965 3.07878 3.23295 3.38949 3.63350 3.72890 3.78760 3.85406 3.94138 4.00252 4.06695 4.11100 4.26496 4.36399 4.40669 4.58309 4.66663 4.66928 4.72350 4.77191 4.87763 4.90235 4.92285 5.01470 5.01774 5.05324 5.15524 5.16341 5.35204 5.44276 5.45129 5.52025 5.55582 5.65030 5.80540 6.14535 6.20372 6.25096 6.78936 7.13211 7.78087 8.43284 9.28452 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.003040 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.926050 B = 9207.273350 C =10247.507689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.575 5.575 3 C 0.529 3.471 4 O -0.588 6.588 5 C -0.675 4.675 6 S 2.652 3.348 7 O -0.975 6.975 8 O -0.988 6.988 9 N -1.098 6.098 10 C 0.167 3.833 11 C -0.183 4.183 12 C -0.147 4.147 13 C -0.213 4.213 14 C 0.124 3.876 15 H 0.107 0.893 16 C -0.144 4.144 17 C 0.187 3.813 18 N -0.615 5.615 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.055 4.055 22 N -0.946 5.946 23 Si 0.971 3.029 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.276 1.276 27 C 0.127 3.873 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.198 0.802 32 H 0.198 0.802 33 H 0.427 0.573 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.007 0.993 47 H 0.246 0.754 48 H 0.039 0.961 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 21.724 1.776 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.304 5.304 3 C 0.317 3.683 4 O -0.471 6.471 5 C -0.803 4.803 6 S 2.742 3.258 7 O -0.965 6.965 8 O -0.977 6.977 9 N -0.862 5.862 10 C 0.080 3.920 11 C -0.242 4.242 12 C -0.205 4.205 13 C -0.271 4.271 14 C 0.020 3.980 15 H 0.125 0.875 16 C -0.183 4.183 17 C 0.062 3.938 18 N -0.341 5.341 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.248 4.248 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.201 1.201 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.215 0.785 32 H 0.215 0.785 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.052 0.948 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.450 21.470 2.024 21.570 hybrid contribution -1.300 -1.064 -0.162 1.687 sum -0.850 20.406 1.862 20.509 Atomic orbital electron populations 1.22300 0.77114 1.05372 1.03099 1.47642 1.08380 1.04555 1.69823 1.19835 0.86866 0.85541 0.76050 1.90798 1.14944 1.87782 1.53562 1.31785 1.20138 1.11048 1.17332 1.03571 0.74221 0.74716 0.73281 1.93526 1.76355 1.84400 1.42183 1.93528 1.64361 1.86651 1.53207 1.55641 1.57267 1.43502 1.29761 1.20374 0.88377 0.95970 0.87305 1.22602 1.01309 1.02028 0.98233 1.22071 0.98653 0.97521 1.02292 1.23126 1.02218 0.97941 1.03825 1.22253 0.96581 0.82615 0.96580 0.87542 1.23171 0.99118 0.99202 0.96804 1.20975 0.92219 0.96353 0.84240 1.44704 1.18026 1.69512 1.01907 1.19311 0.94837 1.30953 0.91169 0.90223 1.25456 1.01090 1.02109 0.96178 1.70139 1.33003 1.51762 1.04597 0.85192 0.79833 0.77607 0.77317 1.20922 1.22742 1.20127 1.21935 0.89632 0.93644 0.94644 0.92146 0.88602 0.89452 0.78522 0.78547 0.73537 0.92354 0.89560 0.92013 0.90610 0.89491 0.91499 0.92413 0.87317 0.88760 0.90664 0.89894 0.94809 0.97513 0.94418 0.94358 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.85 9.12 127.77 1.17 3.02 16 2 N -0.57 -18.32 2.91 -814.82 -2.37 -20.69 16 3 C 0.53 16.52 7.69 87.66 0.67 17.19 16 4 O -0.59 -22.93 14.97 3.46 0.05 -22.88 16 5 C -0.67 -13.56 3.43 71.24 0.24 -13.31 16 6 S 2.65 65.03 4.31 -56.49 -0.24 64.78 16 7 O -0.97 -29.84 15.22 -127.65 -1.94 -31.78 16 8 O -0.99 -32.54 17.69 -123.48 -2.18 -34.73 16 9 N -1.10 -15.87 5.45 -152.21 -0.83 -16.70 16 10 C 0.17 1.89 1.12 3.61 0.00 1.89 16 11 C -0.18 -2.66 8.27 71.98 0.60 -2.07 16 12 C -0.15 -0.89 8.59 71.98 0.62 -0.27 16 13 C -0.21 -1.99 6.63 71.98 0.48 -1.51 16 14 C 0.12 4.39 3.63 46.39 0.17 4.56 16 15 H 0.11 3.74 7.07 -2.39 -0.02 3.72 16 16 C -0.14 -5.21 6.55 31.78 0.21 -5.00 16 17 C 0.19 8.44 4.29 86.73 0.37 8.81 16 18 N -0.61 -28.48 2.27 -691.99 -1.57 -30.05 16 19 C -0.23 -11.92 10.28 84.03 0.86 -11.06 16 20 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.05 -2.86 5.49 84.86 0.47 -2.39 16 22 N -0.95 -52.32 10.31 21.65 0.22 -52.09 16 23 Si 0.97 42.71 29.55 68.60 2.03 44.73 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 27 C 0.13 4.95 6.41 86.86 0.56 5.51 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.96 6.50 -2.39 -0.02 1.95 16 30 H 0.09 3.32 3.86 -2.39 -0.01 3.31 16 31 H 0.20 2.38 7.32 -2.39 -0.02 2.37 16 32 H 0.20 2.86 4.63 -2.39 -0.01 2.85 16 33 H 0.43 4.54 8.61 -96.73 -0.83 3.71 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.25 6.02 -2.39 -0.01 1.23 16 37 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.06 0.69 5.64 -2.39 -0.01 0.68 16 41 H 0.11 0.61 8.12 -2.39 -0.02 0.59 16 42 H 0.09 0.55 6.88 -2.39 -0.02 0.53 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 45 H 0.03 1.65 5.71 -2.39 -0.01 1.64 16 46 H 0.01 0.35 7.51 -2.39 -0.02 0.33 16 47 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 48 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.53 380.92 -0.29 -76.82 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.14 Total: 17.23 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.41 Total: 5.36 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -4.55 Total: -119.54 kcal Atomic # 8 Polarization: -85.31 SS G_CDS: -4.08 Total: -89.38 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 65.03 SS G_CDS: -0.24 Total: 64.78 kcal Total: -76.53 -0.29 -76.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481751528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.920 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds