Wall clock time and date at job start Wed Apr 1 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 N 1.46501 * 109.47360 * 239.99998 * 2 1 3 5 5 S 1.65599 * 119.99997 * 157.74723 * 4 2 1 6 6 C 1.81399 * 104.44729 * 61.32532 * 5 4 2 7 7 O 1.42106 * 104.27342 * 177.39151 * 5 4 2 8 8 O 1.42095 * 104.27927 * 305.24918 * 5 4 2 9 9 C 1.50705 * 109.47046 * 120.00090 * 2 1 3 10 10 O 1.21278 * 119.99921 * 265.00027 * 9 2 1 11 11 N 1.34780 * 119.99649 * 84.99863 * 9 2 1 12 12 C 1.46497 * 119.99511 * 179.97438 * 11 9 2 13 13 H 1.08999 * 110.01815 * 33.61170 * 12 11 9 14 14 C 1.53877 * 110.03337 * 272.16824 * 12 11 9 15 15 C 1.54271 * 106.59604 * 240.71764 * 14 12 11 16 16 C 1.54885 * 104.19795 * 23.61147 * 15 14 12 17 17 C 1.54266 * 110.03032 * 155.00379 * 12 11 9 18 18 H 1.09001 * 110.48861 * 214.48341 * 17 12 11 19 19 C 1.53001 * 110.48551 * 336.99383 * 17 12 11 20 20 N 1.46502 * 109.47440 * 185.00096 * 19 17 12 21 21 C 1.36934 * 120.00252 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99724 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99820 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00268 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99558 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46666 * 179.97438 * 25 23 21 27 27 H 1.48490 * 109.47392 * 299.99785 * 25 23 21 28 28 H 1.48496 * 109.46956 * 60.00153 * 25 23 21 29 29 H 1.09000 * 109.47186 * 299.99933 * 1 2 3 30 30 H 1.09006 * 109.47225 * 59.99543 * 1 2 3 31 31 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47413 * 173.24493 * 3 2 1 33 33 H 1.08993 * 109.47556 * 293.25133 * 3 2 1 34 34 H 1.09003 * 109.47064 * 53.25057 * 3 2 1 35 35 H 0.96997 * 120.00026 * 337.75584 * 4 2 1 36 36 H 1.08995 * 109.47658 * 55.88747 * 6 5 4 37 37 H 1.09002 * 109.46851 * 175.88963 * 6 5 4 38 38 H 1.08998 * 109.46859 * 295.88451 * 6 5 4 39 39 H 0.96997 * 120.00041 * 0.02562 * 11 9 2 40 40 H 1.09000 * 110.03431 * 0.02562 * 14 12 11 41 41 H 1.08999 * 110.02971 * 121.38635 * 14 12 11 42 42 H 1.09001 * 110.48595 * 142.29025 * 15 14 12 43 43 H 1.09003 * 110.48674 * 264.79698 * 15 14 12 44 44 H 1.08999 * 110.75457 * 203.74196 * 16 15 14 45 45 H 1.09000 * 110.75844 * 80.37234 * 16 15 14 46 46 H 1.09000 * 109.47018 * 65.00382 * 19 17 12 47 47 H 1.08997 * 109.47582 * 304.99986 * 19 17 12 48 48 H 0.96999 * 119.99747 * 0.02562 * 20 19 17 49 49 H 0.97007 * 120.00019 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 3.5458 -0.3893 -1.7605 6 6 4.6378 -0.8977 -0.4043 7 8 3.6883 -1.2652 -2.8704 8 8 3.5848 1.0209 -1.9304 9 6 2.0323 -0.7105 1.2305 10 8 2.3207 -0.0749 2.2223 11 7 2.1609 -2.0521 1.2286 12 6 2.6498 -2.7426 2.4246 13 1 2.3122 -2.2216 3.3205 14 6 4.1868 -2.8123 2.4018 15 6 4.5600 -4.3092 2.4020 16 6 3.3081 -5.0130 1.8221 17 6 2.1427 -4.1995 2.4379 18 1 1.9452 -4.5254 3.4591 19 6 0.8829 -4.3358 1.5806 20 7 0.3531 -5.6962 1.7038 21 6 -0.7784 -6.0548 1.0209 22 1 -1.2804 -5.3347 0.3917 23 6 -1.2806 -7.3436 1.1381 24 7 -0.6690 -8.2210 1.9052 25 14 -2.8244 -7.8326 0.2071 26 1 -3.1500 -9.2517 0.4993 27 1 -3.9539 -6.9674 0.6323 28 1 -2.5962 -7.6677 -1.2510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1233 1.4449 0.1209 33 1 1.7787 1.9203 -0.9441 34 1 1.5814 1.9900 0.8234 35 1 1.4470 -1.3242 -1.6576 36 1 4.4327 -1.9355 -0.1420 37 1 5.6770 -0.8010 -0.7188 38 1 4.4601 -0.2618 0.4630 39 1 1.9306 -2.5603 0.4352 40 1 4.5691 -2.3320 1.5011 41 1 4.5958 -2.3246 3.2866 42 1 5.4267 -4.4864 1.7651 43 1 4.7574 -4.6530 3.4174 44 1 3.2657 -6.0533 2.1445 45 1 3.2951 -4.9438 0.7344 46 1 1.1294 -4.1351 0.5380 47 1 0.1329 -3.6218 1.9206 48 1 0.8038 -6.3428 2.2691 49 1 0.1325 -7.9669 2.3890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482691632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:29 Heat of formation + Delta-G solvation = -95.169082 kcal Electronic energy + Delta-G solvation = -31282.127683 eV Core-core repulsion = 27178.764919 eV Total energy + Delta-G solvation = -4103.362764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78488 -38.65410 -37.46503 -36.53090 -36.17476 -34.80244 -33.60207 -31.60699 -30.92276 -29.97949 -28.49162 -28.02092 -27.55488 -24.43815 -23.60375 -22.64038 -20.61217 -20.56803 -19.64640 -19.41283 -18.25230 -17.96440 -17.33059 -16.79696 -16.23194 -16.02760 -15.47210 -15.12136 -15.06292 -14.70911 -14.29782 -14.06441 -13.86661 -13.74482 -13.63734 -13.49697 -13.33315 -13.14543 -12.91446 -12.65678 -12.50643 -12.43118 -12.32266 -12.05056 -11.84246 -11.71440 -11.50540 -11.28038 -11.11447 -11.08628 -10.93848 -10.82438 -10.66736 -10.58843 -10.53028 -10.42745 -10.02804 -9.53181 -9.25418 -9.15438 -8.95280 -7.08650 -6.16896 -3.17421 -0.07638 2.10098 2.49400 2.94162 3.43844 3.47554 3.50601 3.68196 3.87799 4.26266 4.31438 4.42544 4.45333 4.57529 4.61837 4.64510 4.65478 4.87320 4.89786 5.24938 5.29786 5.36814 5.39567 5.42983 5.47013 5.47927 5.55069 5.57749 5.65658 5.73577 5.74758 5.82771 5.85839 5.90164 5.94823 6.03575 6.09065 6.29422 6.31667 6.43527 6.52566 6.54670 6.61067 7.32966 7.72201 7.98968 8.69158 9.15218 10.01669 10.16118 11.31477 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.003556 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.658077 B = 7871.677640 C = 8640.715096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 C -0.157 4.157 4 N -1.111 6.111 5 S 2.610 3.390 6 C -0.684 4.684 7 O -0.955 6.955 8 O -0.950 6.950 9 C 0.496 3.504 10 O -0.531 6.531 11 N -0.713 5.713 12 C 0.145 3.855 13 H 0.092 0.908 14 C -0.143 4.143 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.110 4.110 18 H 0.087 0.913 19 C 0.170 3.830 20 N -0.740 5.740 21 C -0.334 4.334 22 H 0.063 0.937 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.424 0.576 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.405 0.595 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.015 0.985 47 H 0.021 0.979 48 H 0.367 0.633 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 17.261 -2.981 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 C -0.215 4.215 4 N -0.872 5.872 5 S 2.703 3.297 6 C -0.833 4.833 7 O -0.945 6.945 8 O -0.940 6.940 9 C 0.279 3.721 10 O -0.407 6.407 11 N -0.366 5.366 12 C 0.040 3.960 13 H 0.110 0.890 14 C -0.181 4.181 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.129 4.129 18 H 0.106 0.894 19 C 0.042 3.958 20 N -0.386 5.386 21 C -0.465 4.465 22 H 0.081 0.919 23 C -0.240 4.240 24 N -0.587 5.587 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.222 1.222 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.243 0.757 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.201 0.799 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.868 17.104 -3.446 20.044 hybrid contribution 0.951 0.170 0.667 1.174 sum 10.818 17.274 -2.779 20.570 Atomic orbital electron populations 1.22027 0.90168 1.04190 1.04269 1.20526 0.98206 0.92933 0.81526 1.22374 1.02164 0.92169 1.04837 1.55825 1.33487 1.58065 1.39856 1.04895 0.74416 0.74984 0.75454 1.30814 1.17532 1.13702 1.21280 1.93642 1.85221 1.67652 1.47996 1.93657 1.85551 1.29721 1.85088 1.21118 0.77992 0.82970 0.89979 1.90720 1.49393 1.66084 1.34472 1.46366 1.66170 1.06703 1.17395 1.21675 0.93202 0.92831 0.88268 0.88992 1.22786 0.95291 0.97325 1.02720 1.22394 0.98178 0.94515 1.01279 1.22530 0.92945 0.99516 1.00237 1.22514 0.96226 0.92698 1.01448 0.89427 1.20507 0.91484 0.88624 0.95160 1.42334 1.31222 1.08021 1.57011 1.19987 1.03570 0.98523 1.24429 0.91850 1.25762 1.04775 0.92163 1.01335 1.70894 1.20765 1.35866 1.31191 0.83258 0.74647 0.76166 0.74977 1.20997 1.22270 1.22221 0.90161 0.90101 0.90797 0.91509 0.89032 0.89907 0.73984 0.84503 0.84783 0.85086 0.75699 0.90895 0.91171 0.91768 0.91476 0.90920 0.91369 0.96777 0.96125 0.79935 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.63 37.16 0.32 -0.89 16 2 C 0.16 1.47 1.09 -132.97 -0.15 1.33 16 3 C -0.16 -1.48 6.42 37.16 0.24 -1.24 16 4 N -1.11 -9.11 4.65 -0.40 0.00 -9.11 16 5 S 2.61 24.09 5.66 -107.50 -0.61 23.48 16 6 C -0.68 -5.05 8.62 101.05 0.87 -4.18 16 7 O -0.95 -11.95 18.08 -57.54 -1.04 -12.99 16 8 O -0.95 -10.86 14.33 -57.54 -0.82 -11.68 16 9 C 0.50 5.58 4.57 -10.98 -0.05 5.53 16 10 O -0.53 -7.44 15.88 5.56 0.09 -7.35 16 11 N -0.71 -7.85 3.69 -52.72 -0.19 -8.04 16 12 C 0.15 1.75 3.12 -66.81 -0.21 1.54 16 13 H 0.09 1.22 7.56 -51.93 -0.39 0.82 16 14 C -0.14 -1.49 6.59 -25.61 -0.17 -1.65 16 15 C -0.13 -1.33 6.83 -25.07 -0.17 -1.50 16 16 C -0.11 -1.51 6.19 -24.74 -0.15 -1.67 16 17 C -0.11 -1.56 2.84 -88.96 -0.25 -1.81 16 18 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 19 C 0.17 3.06 4.73 -4.04 -0.02 3.04 16 20 N -0.74 -17.47 5.49 -59.91 -0.33 -17.80 16 21 C -0.33 -9.03 9.99 -15.06 -0.15 -9.19 16 22 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 23 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 24 N -0.94 -28.36 13.70 55.49 0.76 -27.60 16 25 Si 1.08 25.23 29.92 -169.99 -5.09 20.14 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 5.84 -51.93 -0.30 0.34 16 33 H 0.09 0.84 7.30 -51.93 -0.38 0.47 16 34 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.42 2.91 8.67 -34.47 -0.30 2.61 16 36 H 0.14 0.99 5.75 -51.93 -0.30 0.70 16 37 H 0.13 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.13 1.01 6.41 -51.92 -0.33 0.68 16 39 H 0.41 4.23 5.92 -40.82 -0.24 3.99 16 40 H 0.07 0.69 4.58 -51.93 -0.24 0.45 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 46 H 0.01 0.25 6.41 -51.93 -0.33 -0.08 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.37 8.93 6.47 -40.82 -0.26 8.67 16 49 H 0.25 7.52 6.78 -40.82 -0.28 7.24 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -35.81 384.81 -9.05 -44.86 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.62 Total: 12.28 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 0.01 Total: -11.98 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.23 Total: -62.56 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.78 Total: -32.03 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.14 kcal Atomic # 16 Polarization: 24.09 SS G_CDS: -0.61 Total: 23.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.81 -9.05 -44.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.313 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds