Wall clock time and date at job start Wed Apr 1 2020 05:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 N 1.46501 * 109.47360 * 239.99998 * 2 1 3 5 5 S 1.65599 * 119.99997 * 157.74723 * 4 2 1 6 6 C 1.81399 * 104.44729 * 61.32532 * 5 4 2 7 7 O 1.42106 * 104.27342 * 177.39151 * 5 4 2 8 8 O 1.42095 * 104.27927 * 305.24918 * 5 4 2 9 9 C 1.50705 * 109.47046 * 120.00090 * 2 1 3 10 10 O 1.21278 * 119.99921 * 265.00027 * 9 2 1 11 11 N 1.34780 * 119.99649 * 84.99863 * 9 2 1 12 12 C 1.46497 * 119.99511 * 179.97438 * 11 9 2 13 13 H 1.08999 * 110.01815 * 33.61170 * 12 11 9 14 14 C 1.53877 * 110.03337 * 272.16824 * 12 11 9 15 15 C 1.54271 * 106.59604 * 240.71764 * 14 12 11 16 16 C 1.54885 * 104.19795 * 23.61147 * 15 14 12 17 17 C 1.54266 * 110.03032 * 155.00379 * 12 11 9 18 18 H 1.09001 * 110.48861 * 214.48341 * 17 12 11 19 19 C 1.53001 * 110.48551 * 336.99383 * 17 12 11 20 20 N 1.46502 * 109.47440 * 185.00096 * 19 17 12 21 21 C 1.36934 * 120.00252 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99724 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99820 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00268 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99558 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46666 * 179.97438 * 25 23 21 27 27 H 1.48490 * 109.47392 * 299.99785 * 25 23 21 28 28 H 1.48496 * 109.46956 * 60.00153 * 25 23 21 29 29 H 1.09000 * 109.47186 * 299.99933 * 1 2 3 30 30 H 1.09006 * 109.47225 * 59.99543 * 1 2 3 31 31 H 1.08998 * 109.47473 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47413 * 173.24493 * 3 2 1 33 33 H 1.08993 * 109.47556 * 293.25133 * 3 2 1 34 34 H 1.09003 * 109.47064 * 53.25057 * 3 2 1 35 35 H 0.96997 * 120.00026 * 337.75584 * 4 2 1 36 36 H 1.08995 * 109.47658 * 55.88747 * 6 5 4 37 37 H 1.09002 * 109.46851 * 175.88963 * 6 5 4 38 38 H 1.08998 * 109.46859 * 295.88451 * 6 5 4 39 39 H 0.96997 * 120.00041 * 0.02562 * 11 9 2 40 40 H 1.09000 * 110.03431 * 0.02562 * 14 12 11 41 41 H 1.08999 * 110.02971 * 121.38635 * 14 12 11 42 42 H 1.09001 * 110.48595 * 142.29025 * 15 14 12 43 43 H 1.09003 * 110.48674 * 264.79698 * 15 14 12 44 44 H 1.08999 * 110.75457 * 203.74196 * 16 15 14 45 45 H 1.09000 * 110.75844 * 80.37234 * 16 15 14 46 46 H 1.09000 * 109.47018 * 65.00382 * 19 17 12 47 47 H 1.08997 * 109.47582 * 304.99986 * 19 17 12 48 48 H 0.96999 * 119.99747 * 0.02562 * 20 19 17 49 49 H 0.97007 * 120.00019 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 3.5458 -0.3893 -1.7605 6 6 4.6378 -0.8977 -0.4043 7 8 3.6883 -1.2652 -2.8704 8 8 3.5848 1.0209 -1.9304 9 6 2.0323 -0.7105 1.2305 10 8 2.3207 -0.0749 2.2223 11 7 2.1609 -2.0521 1.2286 12 6 2.6498 -2.7426 2.4246 13 1 2.3122 -2.2216 3.3205 14 6 4.1868 -2.8123 2.4018 15 6 4.5600 -4.3092 2.4020 16 6 3.3081 -5.0130 1.8221 17 6 2.1427 -4.1995 2.4379 18 1 1.9452 -4.5254 3.4591 19 6 0.8829 -4.3358 1.5806 20 7 0.3531 -5.6962 1.7038 21 6 -0.7784 -6.0548 1.0209 22 1 -1.2804 -5.3347 0.3917 23 6 -1.2806 -7.3436 1.1381 24 7 -0.6690 -8.2210 1.9052 25 14 -2.8244 -7.8326 0.2071 26 1 -3.1500 -9.2517 0.4993 27 1 -3.9539 -6.9674 0.6323 28 1 -2.5962 -7.6677 -1.2510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1233 1.4449 0.1209 33 1 1.7787 1.9203 -0.9441 34 1 1.5814 1.9900 0.8234 35 1 1.4470 -1.3242 -1.6576 36 1 4.4327 -1.9355 -0.1420 37 1 5.6770 -0.8010 -0.7188 38 1 4.4601 -0.2618 0.4630 39 1 1.9306 -2.5603 0.4352 40 1 4.5691 -2.3320 1.5011 41 1 4.5958 -2.3246 3.2866 42 1 5.4267 -4.4864 1.7651 43 1 4.7574 -4.6530 3.4174 44 1 3.2657 -6.0533 2.1445 45 1 3.2951 -4.9438 0.7344 46 1 1.1294 -4.1351 0.5380 47 1 0.1329 -3.6218 1.9206 48 1 0.8038 -6.3428 2.2691 49 1 0.1325 -7.9669 2.3890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482691632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:28 Heat of formation + Delta-G solvation = -123.033195 kcal Electronic energy + Delta-G solvation = -31283.335962 eV Core-core repulsion = 27178.764919 eV Total energy + Delta-G solvation = -4104.571043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72244 -39.67984 -38.32710 -37.38362 -37.00943 -36.59121 -34.56232 -33.34167 -31.64381 -30.70381 -29.91569 -28.96525 -28.29115 -26.11033 -24.58547 -24.27004 -21.54156 -21.44050 -20.63977 -20.36968 -19.47110 -18.90314 -18.71725 -17.67087 -17.21883 -16.94101 -16.61975 -16.22298 -16.09826 -15.73164 -15.66053 -15.39820 -15.06108 -14.91361 -14.65055 -14.57118 -14.32793 -14.03178 -13.68495 -13.55747 -13.42033 -13.24694 -13.17072 -12.85572 -12.79094 -12.77822 -12.60399 -12.58410 -12.32308 -12.17121 -12.04409 -11.94094 -11.87581 -11.84998 -11.74129 -11.66246 -11.36931 -11.19949 -10.89303 -10.38481 -10.13704 -9.09128 -8.37230 -5.31463 -0.80008 1.28025 1.59969 1.68950 1.69121 1.85088 2.03188 2.71801 2.72436 3.15559 3.32346 3.42504 3.53129 3.58140 3.61476 3.76676 3.84241 3.87297 3.97405 4.03577 4.19400 4.32756 4.40080 4.46849 4.50508 4.59084 4.65495 4.71001 4.71565 4.75275 4.76503 4.84791 4.98521 5.02592 5.05398 5.15066 5.18465 5.19947 5.28147 5.31147 5.40809 5.50260 5.60562 5.90431 6.40881 6.51965 7.07379 7.11330 8.01841 8.12478 9.14842 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.003556 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.658077 B = 7871.677640 C = 8640.715096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 C -0.159 4.159 4 N -1.106 6.106 5 S 2.622 3.378 6 C -0.677 4.677 7 O -0.989 6.989 8 O -0.974 6.974 9 C 0.500 3.500 10 O -0.557 6.557 11 N -0.710 5.710 12 C 0.152 3.848 13 H 0.081 0.919 14 C -0.138 4.138 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.103 4.103 18 H 0.076 0.924 19 C 0.170 3.830 20 N -0.753 5.753 21 C -0.332 4.332 22 H 0.068 0.932 23 C -0.102 4.102 24 N -0.976 5.976 25 Si 1.124 2.876 26 H -0.296 1.296 27 H -0.279 1.279 28 H -0.277 1.277 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.431 0.569 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.132 0.868 39 H 0.409 0.591 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.029 0.971 47 H 0.013 0.987 48 H 0.361 0.639 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.119 18.408 -3.634 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.075 3.925 3 C -0.217 4.217 4 N -0.868 5.868 5 S 2.717 3.283 6 C -0.828 4.828 7 O -0.979 6.979 8 O -0.964 6.964 9 C 0.284 3.716 10 O -0.434 6.434 11 N -0.363 5.363 12 C 0.046 3.954 13 H 0.100 0.900 14 C -0.176 4.176 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.122 4.122 18 H 0.095 0.905 19 C 0.044 3.956 20 N -0.398 5.398 21 C -0.463 4.463 22 H 0.086 0.914 23 C -0.294 4.294 24 N -0.624 5.624 25 Si 0.950 3.050 26 H -0.222 1.222 27 H -0.205 1.205 28 H -0.203 1.203 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.268 0.732 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.031 0.969 48 H 0.193 0.807 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.483 18.303 -4.138 21.495 hybrid contribution 0.786 -0.121 0.919 1.215 sum 11.269 18.182 -3.219 21.632 Atomic orbital electron populations 1.22066 0.89276 1.04235 1.05134 1.20443 0.98753 0.92568 0.80780 1.22401 1.02093 0.92212 1.05041 1.55660 1.33498 1.58157 1.39464 1.04382 0.74545 0.73968 0.75432 1.30740 1.18410 1.13829 1.19856 1.93600 1.85795 1.68263 1.50256 1.93625 1.85950 1.31069 1.85793 1.21430 0.77240 0.82718 0.90223 1.90713 1.50541 1.66534 1.35622 1.46324 1.66055 1.06799 1.17125 1.21551 0.94528 0.90951 0.88348 0.90041 1.22767 0.93570 0.97388 1.03863 1.22345 0.97273 0.94013 1.01756 1.22489 0.93980 0.98558 1.00157 1.22385 0.94995 0.94737 1.00090 0.90549 1.20658 0.92736 0.85578 0.96635 1.42552 1.30699 1.09984 1.56563 1.20363 1.04038 0.98429 1.23482 0.91374 1.27094 1.07347 0.92784 1.02143 1.70997 1.21420 1.36820 1.33203 0.82664 0.72119 0.75353 0.74907 1.22214 1.20543 1.20259 0.90204 0.88428 0.91130 0.91730 0.88833 0.89670 0.73179 0.83948 0.82231 0.84909 0.75290 0.89501 0.90354 0.89948 0.90997 0.92818 0.91464 0.95299 0.96888 0.80746 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.63 71.98 0.62 -1.57 16 2 C 0.17 2.80 1.09 2.86 0.00 2.81 16 3 C -0.16 -2.77 6.42 71.98 0.46 -2.31 16 4 N -1.11 -16.42 4.65 -155.18 -0.72 -17.14 16 5 S 2.62 44.53 5.66 -56.49 -0.32 44.21 16 6 C -0.68 -8.18 8.62 113.37 0.98 -7.20 16 7 O -0.99 -23.68 18.08 -127.65 -2.31 -25.98 16 8 O -0.97 -21.12 14.33 -127.65 -1.83 -22.95 16 9 C 0.50 10.44 4.57 87.66 0.40 10.84 16 10 O -0.56 -14.80 15.88 -3.02 -0.05 -14.85 16 11 N -0.71 -14.45 3.69 -439.10 -1.62 -16.07 16 12 C 0.15 3.43 3.12 45.72 0.14 3.57 16 13 H 0.08 2.06 7.56 -2.39 -0.02 2.05 16 14 C -0.14 -2.50 6.59 31.32 0.21 -2.29 16 15 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 16 C -0.11 -2.90 6.19 31.88 0.20 -2.70 16 17 C -0.10 -2.85 2.84 -9.72 -0.03 -2.88 16 18 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.17 6.03 4.73 86.38 0.41 6.44 16 20 N -0.75 -35.74 5.49 -343.45 -1.89 -37.63 16 21 C -0.33 -17.85 9.99 84.03 0.84 -17.01 16 22 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 23 C -0.10 -5.76 5.50 84.86 0.47 -5.30 16 24 N -0.98 -59.74 13.70 21.65 0.30 -59.44 16 25 Si 1.12 50.51 29.92 68.60 2.05 52.57 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.15 5.84 -2.39 -0.01 1.14 16 33 H 0.09 1.60 7.30 -2.39 -0.02 1.58 16 34 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.43 5.25 8.67 -96.75 -0.84 4.41 16 36 H 0.14 1.62 5.75 -2.39 -0.01 1.61 16 37 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.13 1.68 6.41 -2.39 -0.02 1.67 16 39 H 0.41 7.79 5.92 -92.71 -0.55 7.25 16 40 H 0.09 1.34 4.58 -2.39 -0.01 1.33 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.71 7.97 -2.39 -0.02 1.69 16 46 H 0.03 0.96 6.41 -2.39 -0.02 0.95 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.36 17.94 6.47 -92.71 -0.60 17.34 16 49 H 0.24 14.84 6.78 -92.70 -0.63 14.21 16 Total: -1.00 -76.46 384.81 -2.32 -78.79 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.86 Total: 38.05 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.91 Total: -19.55 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -3.93 Total: -130.28 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -4.18 Total: -63.78 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.57 kcal Atomic # 16 Polarization: 44.53 SS G_CDS: -0.32 Total: 44.21 kcal Total: -76.46 -2.32 -78.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.245 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds