Wall clock time and date at job start Wed Apr 1 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 N 1.46494 * 109.47264 * 239.99455 * 2 1 3 5 5 S 1.65598 * 119.99969 * 160.10510 * 4 2 1 6 6 C 1.81398 * 104.44779 * 60.68664 * 5 4 2 7 7 O 1.42099 * 104.27865 * 176.75599 * 5 4 2 8 8 O 1.42092 * 104.28032 * 304.61316 * 5 4 2 9 9 C 1.50704 * 109.46594 * 119.99954 * 2 1 3 10 10 O 1.21284 * 119.99956 * 264.99413 * 9 2 1 11 11 N 1.34770 * 120.00440 * 85.00156 * 9 2 1 12 12 C 1.46500 * 120.00429 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.81397 * 31.66588 * 12 11 9 14 14 C 1.54891 * 110.75512 * 268.32654 * 12 11 9 15 15 C 1.54269 * 104.19306 * 203.74025 * 14 12 11 16 16 C 1.53876 * 106.60057 * 23.61443 * 15 14 12 17 17 C 1.54269 * 106.59687 * 359.97438 * 16 15 14 18 18 H 1.08992 * 110.48850 * 95.20255 * 17 16 15 19 19 C 1.53004 * 110.48757 * 217.71625 * 17 16 15 20 20 N 1.46500 * 109.46514 * 293.54923 * 19 17 16 21 21 C 1.36944 * 119.99824 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99900 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47184 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47465 * 300.00400 * 25 23 21 28 28 H 1.48502 * 109.47049 * 60.00216 * 25 23 21 29 29 H 1.08997 * 109.47066 * 300.00360 * 1 2 3 30 30 H 1.09002 * 109.46624 * 60.00178 * 1 2 3 31 31 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46987 * 173.20071 * 3 2 1 33 33 H 1.09000 * 109.46576 * 293.20298 * 3 2 1 34 34 H 1.09002 * 109.46959 * 53.20445 * 3 2 1 35 35 H 0.97003 * 119.99958 * 340.10961 * 4 2 1 36 36 H 1.08996 * 109.47472 * 55.09348 * 6 5 4 37 37 H 1.09008 * 109.47156 * 175.09476 * 6 5 4 38 38 H 1.09002 * 109.47121 * 295.09008 * 6 5 4 39 39 H 0.97007 * 119.99640 * 359.97438 * 11 9 2 40 40 H 1.08998 * 110.48410 * 85.06926 * 14 12 11 41 41 H 1.08997 * 110.48736 * 322.41797 * 14 12 11 42 42 H 1.08998 * 110.03008 * 264.32664 * 15 14 12 43 43 H 1.09002 * 110.03222 * 142.89711 * 15 14 12 44 44 H 1.09005 * 110.03328 * 240.71741 * 16 15 14 45 45 H 1.08998 * 110.07338 * 119.30462 * 16 15 14 46 46 H 1.08993 * 109.47268 * 173.54770 * 19 17 16 47 47 H 1.09003 * 109.47295 * 53.54316 * 19 17 16 48 48 H 0.96995 * 120.00377 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1960 5 16 3.5658 -0.4336 -1.7268 6 6 4.6131 -0.9785 -0.3495 7 8 3.7058 -1.3100 -2.8366 8 8 3.6506 0.9753 -1.8907 9 6 2.0323 -0.7104 1.2305 10 8 2.3208 -0.0749 2.2224 11 7 2.1610 -2.0520 1.2289 12 6 2.6497 -2.7425 2.4249 13 1 2.3481 -2.2128 3.3285 14 6 4.1890 -2.9073 2.3731 15 6 4.4716 -4.1121 3.2943 16 6 3.1752 -4.9393 3.3464 17 6 2.1497 -4.2080 2.4557 18 1 2.1453 -4.6322 1.4517 19 6 0.7523 -4.2846 3.0740 20 7 0.2898 -5.6746 3.0647 21 6 -0.9431 -5.9894 3.5709 22 1 -1.5742 -5.2131 3.9773 23 6 -1.3816 -7.3065 3.5615 24 7 -0.6126 -8.2526 3.0656 25 14 -3.0630 -7.7360 4.2526 26 1 -3.2919 -9.1977 4.1253 27 1 -3.1235 -7.3479 5.6847 28 1 -4.1107 -7.0037 3.4967 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1232 1.4448 0.1217 33 1 1.7795 1.9199 -0.9446 34 1 1.5809 1.9902 0.8230 35 1 1.4353 -1.2986 -1.6771 36 1 4.3617 -2.0058 -0.0862 37 1 5.6606 -0.9254 -0.6464 38 1 4.4464 -0.3314 0.5117 39 1 1.9300 -2.5604 0.4356 40 1 4.6814 -2.0125 2.7536 41 1 4.5158 -3.1204 1.3553 42 1 4.7333 -3.7646 4.2937 43 1 5.2823 -4.7140 2.8836 44 1 2.8076 -4.9932 4.3712 45 1 3.3560 -5.9429 2.9616 46 1 0.0644 -3.6688 2.4948 47 1 0.7889 -3.9208 4.1009 48 1 0.8565 -6.3719 2.6992 49 1 -0.9188 -9.1729 3.0594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482691639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:38 Heat of formation + Delta-G solvation = -102.855938 kcal Electronic energy + Delta-G solvation = -30716.104902 eV Core-core repulsion = 26612.408811 eV Total energy + Delta-G solvation = -4103.696091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69405 -38.52114 -37.49331 -36.56307 -36.21126 -34.57702 -33.69993 -31.48883 -30.96785 -29.94160 -28.63284 -27.94411 -27.56148 -24.69271 -23.54089 -22.16844 -20.67800 -20.60358 -19.93524 -19.24103 -18.07879 -17.97909 -17.16128 -16.88068 -16.44340 -16.05243 -15.35247 -14.99616 -14.83239 -14.66394 -14.49288 -13.90169 -13.81553 -13.58037 -13.48876 -13.34493 -13.20860 -12.99269 -12.91388 -12.66059 -12.53405 -12.40510 -12.23032 -12.06500 -12.02872 -11.90348 -11.47735 -11.35746 -11.14925 -11.05189 -10.99741 -10.90151 -10.77912 -10.59762 -10.48656 -10.23457 -10.03888 -9.75889 -9.55843 -9.11682 -8.91200 -6.96756 -5.80833 -3.09516 -0.10711 2.06603 2.46575 2.90176 3.40254 3.40980 3.45760 3.46490 3.85506 4.22089 4.31168 4.43090 4.46743 4.55709 4.58304 4.67661 4.72743 4.85123 4.93712 5.28991 5.33639 5.36820 5.38485 5.46105 5.46753 5.52004 5.56563 5.61421 5.71208 5.72785 5.78366 5.80347 5.96818 6.01436 6.08928 6.15860 6.22170 6.35698 6.46676 6.48191 6.53254 6.69675 6.82282 7.29421 7.65598 7.96333 8.38140 9.49541 10.06708 10.41578 11.41850 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002946 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.873856 B = 9503.110545 C =10115.704390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.160 3.840 3 C -0.157 4.157 4 N -1.111 6.111 5 S 2.610 3.390 6 C -0.681 4.681 7 O -0.957 6.957 8 O -0.951 6.951 9 C 0.497 3.503 10 O -0.527 6.527 11 N -0.713 5.713 12 C 0.141 3.859 13 H 0.102 0.898 14 C -0.136 4.136 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.103 4.103 18 H 0.078 0.922 19 C 0.162 3.838 20 N -0.731 5.731 21 C -0.241 4.241 22 H 0.068 0.932 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.423 0.577 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.402 0.598 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 16.944 -8.055 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.068 3.932 3 C -0.216 4.216 4 N -0.872 5.872 5 S 2.702 3.298 6 C -0.831 4.831 7 O -0.947 6.947 8 O -0.940 6.940 9 C 0.280 3.720 10 O -0.402 6.402 11 N -0.364 5.364 12 C 0.036 3.964 13 H 0.120 0.880 14 C -0.175 4.175 15 C -0.161 4.161 16 C -0.150 4.150 17 C -0.123 4.123 18 H 0.097 0.903 19 C 0.035 3.965 20 N -0.375 5.375 21 C -0.372 4.372 22 H 0.086 0.914 23 C -0.208 4.208 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.099 17.878 -7.976 22.504 hybrid contribution -1.053 -1.531 0.417 1.905 sum 10.046 16.348 -7.559 20.623 Atomic orbital electron populations 1.22022 0.90139 1.04111 1.04325 1.20535 0.98205 0.92991 0.81488 1.22362 1.02369 0.92158 1.04670 1.55822 1.32051 1.59994 1.39367 1.04897 0.74303 0.75027 0.75562 1.30768 1.16906 1.14031 1.21393 1.93634 1.85202 1.67754 1.48123 1.93656 1.85475 1.29752 1.85166 1.21087 0.78000 0.82927 0.89979 1.90740 1.49062 1.65993 1.34415 1.46106 1.66347 1.06785 1.17127 1.22149 0.92963 0.92877 0.88375 0.88016 1.22827 0.95809 0.98774 1.00092 1.22104 0.98330 0.96132 0.99485 1.22069 0.93281 0.98803 1.00890 1.22429 0.96662 0.92721 1.00447 0.90337 1.20664 0.90601 0.88495 0.96786 1.42315 1.18665 1.02394 1.74109 1.19170 0.93189 0.92463 1.32394 0.91353 1.24723 0.98516 0.95804 1.01789 1.69643 1.36999 1.00251 1.51295 0.86276 0.84012 0.77103 0.78833 1.21674 1.21270 1.21290 0.90071 0.90167 0.90847 0.91309 0.89289 0.89906 0.74099 0.84610 0.84842 0.85099 0.76308 0.91354 0.91481 0.91784 0.91832 0.90845 0.91187 0.96530 0.96258 0.78246 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.62 37.16 0.32 -0.74 16 2 C 0.16 1.33 1.09 -132.97 -0.15 1.18 16 3 C -0.16 -1.40 6.45 37.16 0.24 -1.16 16 4 N -1.11 -7.74 4.66 -0.40 0.00 -7.74 16 5 S 2.61 21.79 5.69 -107.50 -0.61 21.18 16 6 C -0.68 -4.59 9.43 101.05 0.95 -3.64 16 7 O -0.96 -10.95 18.08 -57.54 -1.04 -11.99 16 8 O -0.95 -10.35 14.42 -57.54 -0.83 -11.18 16 9 C 0.50 5.25 4.42 -10.99 -0.05 5.21 16 10 O -0.53 -7.26 15.87 5.55 0.09 -7.17 16 11 N -0.71 -7.10 4.12 -51.89 -0.21 -7.31 16 12 C 0.14 1.67 2.69 -65.95 -0.18 1.49 16 13 H 0.10 1.40 7.47 -51.93 -0.39 1.01 16 14 C -0.14 -1.39 6.21 -25.07 -0.16 -1.55 16 15 C -0.12 -1.34 6.80 -25.61 -0.17 -1.51 16 16 C -0.11 -1.56 6.05 -25.61 -0.15 -1.72 16 17 C -0.10 -1.46 2.55 -88.97 -0.23 -1.69 16 18 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 19 C 0.16 3.05 5.57 -4.04 -0.02 3.02 16 20 N -0.73 -17.59 5.44 -59.91 -0.33 -17.92 16 21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 25 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.64 5.98 -51.93 -0.31 0.33 16 33 H 0.09 0.77 7.45 -51.93 -0.39 0.38 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.42 2.18 8.65 -34.47 -0.30 1.88 16 36 H 0.14 0.87 5.15 -51.93 -0.27 0.60 16 37 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.13 0.96 6.50 -51.92 -0.34 0.62 16 39 H 0.40 3.32 7.93 -40.82 -0.32 2.99 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 48 H 0.38 9.68 7.52 -40.82 -0.31 9.37 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -35.44 391.73 -9.12 -44.55 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.95 Total: 9.72 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 0.16 Total: -8.27 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.18 Total: -59.78 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.78 Total: -30.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 21.79 SS G_CDS: -0.61 Total: 21.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.44 -9.12 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.303 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds