Wall clock time and date at job start Wed Apr 1 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 N 1.46494 * 109.47264 * 239.99455 * 2 1 3 5 5 S 1.65598 * 119.99969 * 160.10510 * 4 2 1 6 6 C 1.81398 * 104.44779 * 60.68664 * 5 4 2 7 7 O 1.42099 * 104.27865 * 176.75599 * 5 4 2 8 8 O 1.42092 * 104.28032 * 304.61316 * 5 4 2 9 9 C 1.50704 * 109.46594 * 119.99954 * 2 1 3 10 10 O 1.21284 * 119.99956 * 264.99413 * 9 2 1 11 11 N 1.34770 * 120.00440 * 85.00156 * 9 2 1 12 12 C 1.46500 * 120.00429 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.81397 * 31.66588 * 12 11 9 14 14 C 1.54891 * 110.75512 * 268.32654 * 12 11 9 15 15 C 1.54269 * 104.19306 * 203.74025 * 14 12 11 16 16 C 1.53876 * 106.60057 * 23.61443 * 15 14 12 17 17 C 1.54269 * 106.59687 * 359.97438 * 16 15 14 18 18 H 1.08992 * 110.48850 * 95.20255 * 17 16 15 19 19 C 1.53004 * 110.48757 * 217.71625 * 17 16 15 20 20 N 1.46500 * 109.46514 * 293.54923 * 19 17 16 21 21 C 1.36944 * 119.99824 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99900 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47184 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47465 * 300.00400 * 25 23 21 28 28 H 1.48502 * 109.47049 * 60.00216 * 25 23 21 29 29 H 1.08997 * 109.47066 * 300.00360 * 1 2 3 30 30 H 1.09002 * 109.46624 * 60.00178 * 1 2 3 31 31 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46987 * 173.20071 * 3 2 1 33 33 H 1.09000 * 109.46576 * 293.20298 * 3 2 1 34 34 H 1.09002 * 109.46959 * 53.20445 * 3 2 1 35 35 H 0.97003 * 119.99958 * 340.10961 * 4 2 1 36 36 H 1.08996 * 109.47472 * 55.09348 * 6 5 4 37 37 H 1.09008 * 109.47156 * 175.09476 * 6 5 4 38 38 H 1.09002 * 109.47121 * 295.09008 * 6 5 4 39 39 H 0.97007 * 119.99640 * 359.97438 * 11 9 2 40 40 H 1.08998 * 110.48410 * 85.06926 * 14 12 11 41 41 H 1.08997 * 110.48736 * 322.41797 * 14 12 11 42 42 H 1.08998 * 110.03008 * 264.32664 * 15 14 12 43 43 H 1.09002 * 110.03222 * 142.89711 * 15 14 12 44 44 H 1.09005 * 110.03328 * 240.71741 * 16 15 14 45 45 H 1.08998 * 110.07338 * 119.30462 * 16 15 14 46 46 H 1.08993 * 109.47268 * 173.54770 * 19 17 16 47 47 H 1.09003 * 109.47295 * 53.54316 * 19 17 16 48 48 H 0.96995 * 120.00377 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1960 5 16 3.5658 -0.4336 -1.7268 6 6 4.6131 -0.9785 -0.3495 7 8 3.7058 -1.3100 -2.8366 8 8 3.6506 0.9753 -1.8907 9 6 2.0323 -0.7104 1.2305 10 8 2.3208 -0.0749 2.2224 11 7 2.1610 -2.0520 1.2289 12 6 2.6497 -2.7425 2.4249 13 1 2.3481 -2.2128 3.3285 14 6 4.1890 -2.9073 2.3731 15 6 4.4716 -4.1121 3.2943 16 6 3.1752 -4.9393 3.3464 17 6 2.1497 -4.2080 2.4557 18 1 2.1453 -4.6322 1.4517 19 6 0.7523 -4.2846 3.0740 20 7 0.2898 -5.6746 3.0647 21 6 -0.9431 -5.9894 3.5709 22 1 -1.5742 -5.2131 3.9773 23 6 -1.3816 -7.3065 3.5615 24 7 -0.6126 -8.2526 3.0656 25 14 -3.0630 -7.7360 4.2526 26 1 -3.2919 -9.1977 4.1253 27 1 -3.1235 -7.3479 5.6847 28 1 -4.1107 -7.0037 3.4967 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1232 1.4448 0.1217 33 1 1.7795 1.9199 -0.9446 34 1 1.5809 1.9902 0.8230 35 1 1.4353 -1.2986 -1.6771 36 1 4.3617 -2.0058 -0.0862 37 1 5.6606 -0.9254 -0.6464 38 1 4.4464 -0.3314 0.5117 39 1 1.9300 -2.5604 0.4356 40 1 4.6814 -2.0125 2.7536 41 1 4.5158 -3.1204 1.3553 42 1 4.7333 -3.7646 4.2937 43 1 5.2823 -4.7140 2.8836 44 1 2.8076 -4.9932 4.3712 45 1 3.3560 -5.9429 2.9616 46 1 0.0644 -3.6688 2.4948 47 1 0.7889 -3.9208 4.1009 48 1 0.8565 -6.3719 2.6992 49 1 -0.9188 -9.1729 3.0594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482691639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:37 Heat of formation + Delta-G solvation = -130.869220 kcal Electronic energy + Delta-G solvation = -30717.319649 eV Core-core repulsion = 26612.408811 eV Total energy + Delta-G solvation = -4104.910838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56732 -39.54990 -38.29062 -37.34633 -36.98014 -36.30620 -34.70649 -33.30049 -31.61285 -30.61469 -30.05754 -28.87303 -28.25716 -26.34026 -24.60473 -23.69066 -21.61870 -21.46992 -20.83245 -20.13654 -19.28415 -18.72228 -18.62905 -17.80430 -17.25443 -16.80015 -16.64273 -16.20739 -15.97861 -15.78800 -15.36836 -15.11961 -14.97034 -14.75272 -14.52447 -14.34865 -14.21374 -13.96773 -13.71788 -13.47210 -13.36803 -13.22700 -13.19300 -13.10245 -12.99755 -12.77584 -12.75185 -12.60795 -12.38444 -12.22710 -12.14969 -12.02905 -11.87401 -11.84707 -11.68896 -11.60479 -11.52540 -11.24228 -10.92028 -10.35528 -10.05461 -8.98709 -7.95013 -5.23001 -0.76154 1.31019 1.47556 1.49478 1.55775 1.72822 2.05103 2.55807 2.75681 3.19654 3.38223 3.43210 3.57593 3.62112 3.67710 3.83626 3.89211 3.93922 4.02943 4.20074 4.24626 4.43224 4.49045 4.51146 4.53268 4.68804 4.70296 4.72454 4.75290 4.80272 4.86966 4.98296 5.05625 5.06779 5.15708 5.20093 5.23412 5.27245 5.32416 5.34087 5.47461 5.50784 5.59139 5.97737 6.27369 6.46609 7.12680 7.34677 8.10489 8.34676 9.27878 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002946 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.873856 B = 9503.110545 C =10115.704390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.169 3.831 3 C -0.160 4.160 4 N -1.103 6.103 5 S 2.622 3.378 6 C -0.675 4.675 7 O -0.988 6.988 8 O -0.978 6.978 9 C 0.499 3.501 10 O -0.558 6.558 11 N -0.707 5.707 12 C 0.149 3.851 13 H 0.083 0.917 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.112 4.112 17 C -0.094 4.094 18 H 0.086 0.914 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.070 0.930 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.969 3.031 26 H -0.295 1.295 27 H -0.281 1.281 28 H -0.278 1.278 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.433 0.567 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.412 0.588 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.018 0.982 47 H 0.009 0.991 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 17.658 -8.549 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.076 3.924 3 C -0.218 4.218 4 N -0.865 5.865 5 S 2.717 3.283 6 C -0.827 4.827 7 O -0.978 6.978 8 O -0.968 6.968 9 C 0.284 3.716 10 O -0.436 6.436 11 N -0.358 5.358 12 C 0.044 3.956 13 H 0.101 0.899 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.113 4.113 18 H 0.104 0.896 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.221 1.221 27 H -0.207 1.207 28 H -0.204 1.204 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.271 0.729 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.249 0.751 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.027 0.973 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.518 18.625 -8.508 23.493 hybrid contribution -1.179 -1.709 0.628 2.169 sum 10.339 16.916 -7.880 21.334 Atomic orbital electron populations 1.22066 0.89096 1.04512 1.05015 1.20405 0.98820 0.92397 0.80765 1.22389 1.02143 0.92498 1.04809 1.55609 1.31974 1.60078 1.38881 1.04350 0.74444 0.73964 0.75521 1.30702 1.17875 1.14196 1.19891 1.93596 1.85747 1.68259 1.50210 1.93621 1.85926 1.31373 1.85901 1.21441 0.77191 0.82777 0.90209 1.90731 1.50437 1.66614 1.35771 1.46030 1.66058 1.06778 1.16898 1.21916 0.94308 0.90934 0.88472 0.89923 1.22806 0.94010 0.98691 1.01220 1.22057 0.96920 0.96064 1.00230 1.22016 0.94882 0.98962 0.99201 1.22292 0.93947 0.94741 1.00322 0.89569 1.20775 0.93326 0.85699 0.96555 1.42479 1.17787 1.04279 1.73720 1.19545 0.94261 0.92627 1.31492 0.91184 1.25481 1.02022 0.95867 1.02894 1.69788 1.38636 1.00230 1.52973 0.85283 0.80159 0.76427 0.78316 1.22079 1.20705 1.20390 0.90504 0.88445 0.90587 0.91763 0.89009 0.89914 0.72935 0.83810 0.82480 0.85238 0.75089 0.90619 0.89370 0.91383 0.90124 0.93258 0.92197 0.96403 0.97300 0.79157 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.62 71.98 0.62 -1.28 16 2 C 0.17 2.55 1.09 2.86 0.00 2.55 16 3 C -0.16 -2.67 6.45 71.98 0.46 -2.21 16 4 N -1.10 -13.46 4.66 -155.18 -0.72 -14.19 16 5 S 2.62 39.79 5.69 -56.49 -0.32 39.47 16 6 C -0.67 -7.30 9.43 113.37 1.07 -6.23 16 7 O -0.99 -21.31 18.08 -127.65 -2.31 -23.62 16 8 O -0.98 -20.27 14.42 -127.65 -1.84 -22.11 16 9 C 0.50 9.82 4.42 87.66 0.39 10.21 16 10 O -0.56 -14.79 15.87 -3.04 -0.05 -14.84 16 11 N -0.71 -12.78 4.12 -436.46 -1.80 -14.58 16 12 C 0.15 3.31 2.69 46.28 0.12 3.43 16 13 H 0.08 2.22 7.47 -2.39 -0.02 2.20 16 14 C -0.13 -2.28 6.21 31.67 0.20 -2.08 16 15 C -0.11 -2.26 6.80 31.32 0.21 -2.05 16 16 C -0.11 -3.07 6.05 31.32 0.19 -2.88 16 17 C -0.09 -2.57 2.55 -9.72 -0.02 -2.60 16 18 H 0.09 2.27 8.02 -2.39 -0.02 2.25 16 19 C 0.16 6.12 5.57 86.38 0.48 6.60 16 20 N -0.74 -35.92 5.44 -343.45 -1.87 -37.79 16 21 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 25 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.13 5.98 -2.39 -0.01 1.12 16 33 H 0.09 1.48 7.45 -2.39 -0.02 1.47 16 34 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.43 3.63 8.65 -96.74 -0.84 2.80 16 36 H 0.14 1.35 5.15 -2.39 -0.01 1.34 16 37 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.13 1.58 6.50 -2.39 -0.02 1.56 16 39 H 0.41 5.87 7.93 -92.70 -0.74 5.14 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.21 6.16 -2.39 -0.01 1.20 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.57 7.77 -2.38 -0.02 1.55 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 48 H 0.38 19.24 7.52 -92.71 -0.70 18.54 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -75.92 391.73 -2.85 -78.77 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -1.29 Total: 31.51 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.03 Total: -12.70 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -4.11 Total: -123.84 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -4.20 Total: -60.57 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 39.79 SS G_CDS: -0.32 Total: 39.47 kcal Total: -75.92 -2.85 -78.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482691639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.100 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds