Wall clock time and date at job start Wed Apr 1 2020 04:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47325 * 55.00009 * 11 10 9 13 13 C 1.53005 * 109.46896 * 294.99568 * 11 10 9 14 14 C 1.52991 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47084 * 60.00337 * 14 13 11 16 16 C 1.53005 * 109.47157 * 299.99743 * 15 14 13 17 17 C 1.53004 * 109.46748 * 175.00140 * 11 10 9 18 18 H 1.08993 * 109.47315 * 59.99863 * 17 11 10 19 19 N 1.46496 * 109.46846 * 299.99480 * 17 11 10 20 20 C 1.34773 * 119.99805 * 155.00430 * 19 17 11 21 21 O 1.21284 * 120.00190 * 359.97438 * 20 19 17 22 22 C 1.50700 * 120.00237 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.47410 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47189 * 180.02562 * 23 22 20 25 25 S 1.81397 * 109.47165 * 179.97438 * 24 23 22 26 26 N 1.65603 * 104.45083 * 179.97438 * 25 24 23 27 27 O 1.42092 * 110.54484 * 291.62341 * 25 24 23 28 28 O 1.42103 * 110.54438 * 68.37273 * 25 24 23 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 32 32 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 33 33 H 1.08998 * 109.47107 * 300.00938 * 13 11 10 34 34 H 1.08996 * 109.46590 * 60.00209 * 13 11 10 35 35 H 1.08998 * 109.47671 * 300.00377 * 14 13 11 36 36 H 1.08998 * 109.47323 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47128 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.47296 * 59.99789 * 15 14 13 39 39 H 1.08999 * 109.47055 * 300.00194 * 16 15 14 40 40 H 1.09001 * 109.47123 * 179.97438 * 16 15 14 41 41 H 0.96995 * 120.00228 * 335.00137 * 19 17 11 42 42 H 1.09004 * 109.47167 * 299.99606 * 22 20 19 43 43 H 1.08997 * 109.47112 * 59.99990 * 22 20 19 44 44 H 1.09001 * 109.47017 * 300.00238 * 23 22 20 45 45 H 1.08997 * 109.47008 * 59.99906 * 23 22 20 46 46 H 1.09001 * 109.47245 * 299.99988 * 24 23 22 47 47 H 1.08999 * 109.47753 * 59.99700 * 24 23 22 48 48 H 0.97002 * 119.99734 * 149.99618 * 26 25 24 49 49 H 0.96997 * 120.00324 * 330.00663 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3798 -4.7082 -0.8616 13 6 0.2684 -4.8183 1.2870 14 6 -0.7254 -5.9814 1.2806 15 6 0.0359 -7.3019 1.1482 16 6 0.8310 -7.3034 -0.1589 17 6 1.8245 -6.1404 -0.1528 18 1 2.5083 -6.2519 0.6886 19 7 2.5859 -6.1417 -1.4044 20 6 3.6854 -6.9119 -1.5234 21 8 4.0449 -7.6035 -0.5942 22 6 4.4684 -6.9137 -2.8111 23 6 5.6593 -7.8657 -2.6826 24 6 6.4545 -7.8670 -3.9896 25 16 7.8668 -8.9950 -3.8370 26 7 8.6308 -8.9015 -5.3033 27 8 8.8169 -8.4824 -2.9130 28 8 7.4226 -10.3426 -3.7592 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0068 31 1 2.6846 -3.7098 -0.9038 32 1 2.6846 -3.7192 0.8761 33 1 0.9523 -4.9297 2.1284 34 1 -0.2735 -3.8773 1.3815 35 1 -1.4093 -5.8704 0.4392 36 1 -1.2922 -5.9802 2.2116 37 1 -0.6722 -8.1306 1.1432 38 1 0.7198 -7.4130 1.9897 39 1 0.1471 -7.1924 -1.0004 40 1 1.3737 -8.2440 -0.2530 41 1 2.2986 -5.5884 -2.1474 42 1 3.8255 -7.2448 -3.6267 43 1 4.8289 -5.9062 -3.0186 44 1 6.3023 -7.5351 -1.8668 45 1 5.2984 -8.8731 -2.4753 46 1 5.8117 -8.1973 -4.8057 47 1 6.8154 -6.8595 -4.1966 48 1 9.5898 -9.0360 -5.3600 49 1 8.1194 -8.7121 -6.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483444849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:12 Heat of formation + Delta-G solvation = -131.891065 kcal Electronic energy + Delta-G solvation = -28670.834069 eV Core-core repulsion = 24565.878920 eV Total energy + Delta-G solvation = -4104.955149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.19342 -38.35045 -37.36771 -36.28045 -35.04754 -34.63563 -34.12425 -33.62835 -31.91850 -30.06132 -29.58632 -28.18719 -25.24021 -23.42833 -22.96479 -21.79049 -20.66490 -20.37722 -19.82539 -19.61890 -18.13320 -17.68822 -17.35648 -16.90078 -16.60958 -16.18164 -15.93377 -15.48773 -14.91734 -14.54983 -14.45178 -14.22366 -13.87377 -13.71224 -13.39181 -13.26425 -13.08085 -12.75098 -12.61509 -12.53243 -12.44068 -12.34869 -12.30477 -12.27866 -11.84446 -11.55053 -11.33936 -11.19325 -11.10534 -10.90703 -10.89866 -10.80229 -10.73140 -10.41341 -10.27370 -10.12691 -9.99922 -9.73867 -9.63752 -8.94989 -8.84928 -6.94613 -5.79611 -3.07927 -0.16682 2.46456 2.62272 3.10409 3.33849 3.41447 3.46329 3.47062 3.85160 4.06553 4.43321 4.49188 4.54443 4.76736 4.83424 4.87610 4.94935 5.03594 5.06877 5.24086 5.26420 5.35310 5.50792 5.52506 5.55356 5.58167 5.62585 5.66551 5.68406 5.73348 5.88585 6.09819 6.12814 6.19844 6.23798 6.27698 6.38186 6.54643 6.55095 6.57647 6.66938 6.76131 6.88994 7.53446 7.66825 8.22850 8.39549 9.50766 10.08526 10.43406 11.43144 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.002335 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.552346 B =11986.336647 C =14443.574928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.099 4.099 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.153 3.847 18 H 0.088 0.912 19 N -0.719 5.719 20 C 0.511 3.489 21 O -0.544 6.544 22 C -0.135 4.135 23 C -0.098 4.098 24 C -0.624 4.624 25 S 2.616 3.384 26 N -1.253 6.253 27 O -0.960 6.960 28 O -0.960 6.960 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.420 0.580 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -18.929 -11.626 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.048 3.952 18 H 0.106 0.894 19 N -0.370 5.370 20 C 0.297 3.703 21 O -0.421 6.421 22 C -0.176 4.176 23 C -0.137 4.137 24 C -0.754 4.754 25 S 2.707 3.293 26 N -0.925 5.925 27 O -0.949 6.949 28 O -0.949 6.949 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.250 0.750 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.775 -19.856 -10.025 23.912 hybrid contribution -0.213 1.884 -1.300 2.299 sum 8.561 -17.972 -11.325 22.903 Atomic orbital electron populations 1.69643 1.05079 1.25756 1.57769 1.24725 0.95517 0.97646 1.03054 0.86274 0.78523 0.83574 0.77850 1.21332 1.21695 1.21277 1.19169 0.90956 0.84214 1.42709 0.91383 1.42359 1.05807 0.99879 1.89474 1.20661 0.93026 0.85350 0.97841 1.21591 0.97695 0.93406 0.99188 0.90748 1.21494 0.97674 0.98836 0.96530 1.21594 0.98066 0.94549 1.01675 1.21488 0.98761 0.97649 0.97413 1.21881 0.97817 0.98456 0.98263 1.21010 0.92702 0.94837 0.86652 0.89435 1.46116 1.27641 1.45760 1.17441 1.20541 0.80673 0.79506 0.89565 1.90712 1.68671 1.41753 1.40985 1.21619 0.97052 1.02246 0.96668 1.21047 0.96859 1.02261 0.93518 1.30506 1.19159 1.18070 1.07671 1.04730 0.75791 0.75776 0.73016 1.53258 1.20835 1.91957 1.26441 1.93625 1.58662 1.81373 1.61282 1.93632 1.82937 1.33133 1.85218 0.93476 0.78219 0.96440 0.96419 0.92041 0.90236 0.92056 0.92088 0.92178 0.91883 0.91969 0.91831 0.76303 0.88448 0.88111 0.89137 0.89299 0.84703 0.84292 0.75045 0.76170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.79 5.33 -59.90 -0.32 -18.10 16 10 C 0.16 3.06 5.57 -4.04 -0.02 3.04 16 11 C -0.10 -1.50 1.80 -90.61 -0.16 -1.66 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.61 5.08 -26.73 -0.14 -1.74 16 14 C -0.12 -1.48 5.92 -26.74 -0.16 -1.64 16 15 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.13 -1.49 5.49 -26.75 -0.15 -1.63 16 17 C 0.15 2.04 1.90 -67.95 -0.13 1.91 16 18 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 19 N -0.72 -8.44 4.30 -53.83 -0.23 -8.67 16 20 C 0.51 6.21 7.79 -10.99 -0.09 6.12 16 21 O -0.54 -8.64 15.64 5.55 0.09 -8.56 16 22 C -0.13 -1.06 5.70 -27.88 -0.16 -1.22 16 23 C -0.10 -0.80 4.51 -26.73 -0.12 -0.92 16 24 C -0.62 -2.80 6.17 37.16 0.23 -2.57 16 25 S 2.62 18.33 5.97 -107.50 -0.64 17.69 16 26 N -1.25 -4.25 9.36 60.35 0.57 -3.69 16 27 O -0.96 -10.88 18.10 -57.54 -1.04 -11.92 16 28 O -0.96 -10.66 18.10 -57.54 -1.04 -11.70 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 31 H 0.02 0.34 7.30 -51.93 -0.38 -0.04 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.39 7.18 -51.93 -0.37 1.01 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.03 8.39 -40.82 -0.34 3.69 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 45 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 47 H 0.14 0.36 8.14 -51.92 -0.42 -0.07 16 48 H 0.42 1.19 8.96 -34.47 -0.31 0.88 16 49 H 0.41 0.18 8.96 -34.48 -0.31 -0.13 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -38.96 405.51 -10.38 -49.33 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.27 Total: 8.30 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.30 Total: -8.97 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.74 Total: -57.40 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -2.00 Total: -32.18 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 18.33 SS G_CDS: -0.64 Total: 17.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.96 -10.38 -49.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483444849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.559 kcal (2) G-P(sol) polarization free energy of solvation -38.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds