Wall clock time and date at job start Wed Apr 1 2020 04:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47325 * 55.00009 * 11 10 9 13 13 C 1.53005 * 109.46896 * 294.99568 * 11 10 9 14 14 C 1.52991 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47084 * 60.00337 * 14 13 11 16 16 C 1.53005 * 109.47157 * 299.99743 * 15 14 13 17 17 C 1.53004 * 109.46748 * 175.00140 * 11 10 9 18 18 H 1.08993 * 109.47315 * 59.99863 * 17 11 10 19 19 N 1.46496 * 109.46846 * 299.99480 * 17 11 10 20 20 C 1.34773 * 119.99805 * 155.00430 * 19 17 11 21 21 O 1.21284 * 120.00190 * 359.97438 * 20 19 17 22 22 C 1.50700 * 120.00237 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.47410 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47189 * 180.02562 * 23 22 20 25 25 S 1.81397 * 109.47165 * 179.97438 * 24 23 22 26 26 N 1.65603 * 104.45083 * 179.97438 * 25 24 23 27 27 O 1.42092 * 110.54484 * 291.62341 * 25 24 23 28 28 O 1.42103 * 110.54438 * 68.37273 * 25 24 23 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 32 32 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 33 33 H 1.08998 * 109.47107 * 300.00938 * 13 11 10 34 34 H 1.08996 * 109.46590 * 60.00209 * 13 11 10 35 35 H 1.08998 * 109.47671 * 300.00377 * 14 13 11 36 36 H 1.08998 * 109.47323 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47128 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.47296 * 59.99789 * 15 14 13 39 39 H 1.08999 * 109.47055 * 300.00194 * 16 15 14 40 40 H 1.09001 * 109.47123 * 179.97438 * 16 15 14 41 41 H 0.96995 * 120.00228 * 335.00137 * 19 17 11 42 42 H 1.09004 * 109.47167 * 299.99606 * 22 20 19 43 43 H 1.08997 * 109.47112 * 59.99990 * 22 20 19 44 44 H 1.09001 * 109.47017 * 300.00238 * 23 22 20 45 45 H 1.08997 * 109.47008 * 59.99906 * 23 22 20 46 46 H 1.09001 * 109.47245 * 299.99988 * 24 23 22 47 47 H 1.08999 * 109.47753 * 59.99700 * 24 23 22 48 48 H 0.97002 * 119.99734 * 149.99618 * 26 25 24 49 49 H 0.96997 * 120.00324 * 330.00663 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3798 -4.7082 -0.8616 13 6 0.2684 -4.8183 1.2870 14 6 -0.7254 -5.9814 1.2806 15 6 0.0359 -7.3019 1.1482 16 6 0.8310 -7.3034 -0.1589 17 6 1.8245 -6.1404 -0.1528 18 1 2.5083 -6.2519 0.6886 19 7 2.5859 -6.1417 -1.4044 20 6 3.6854 -6.9119 -1.5234 21 8 4.0449 -7.6035 -0.5942 22 6 4.4684 -6.9137 -2.8111 23 6 5.6593 -7.8657 -2.6826 24 6 6.4545 -7.8670 -3.9896 25 16 7.8668 -8.9950 -3.8370 26 7 8.6308 -8.9015 -5.3033 27 8 8.8169 -8.4824 -2.9130 28 8 7.4226 -10.3426 -3.7592 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0068 31 1 2.6846 -3.7098 -0.9038 32 1 2.6846 -3.7192 0.8761 33 1 0.9523 -4.9297 2.1284 34 1 -0.2735 -3.8773 1.3815 35 1 -1.4093 -5.8704 0.4392 36 1 -1.2922 -5.9802 2.2116 37 1 -0.6722 -8.1306 1.1432 38 1 0.7198 -7.4130 1.9897 39 1 0.1471 -7.1924 -1.0004 40 1 1.3737 -8.2440 -0.2530 41 1 2.2986 -5.5884 -2.1474 42 1 3.8255 -7.2448 -3.6267 43 1 4.8289 -5.9062 -3.0186 44 1 6.3023 -7.5351 -1.8668 45 1 5.2984 -8.8731 -2.4753 46 1 5.8117 -8.1973 -4.8057 47 1 6.8154 -6.8595 -4.1966 48 1 9.5898 -9.0360 -5.3600 49 1 8.1194 -8.7121 -6.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483444849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:11 Heat of formation + Delta-G solvation = -164.285380 kcal Electronic energy + Delta-G solvation = -28672.238792 eV Core-core repulsion = 24565.878920 eV Total energy + Delta-G solvation = -4106.359872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.22895 -39.45791 -38.07088 -36.97902 -36.43000 -35.65854 -35.16588 -33.98785 -33.68067 -31.21905 -30.96671 -28.96712 -26.90400 -24.72423 -24.18370 -22.73922 -21.98630 -21.37229 -20.69475 -20.34580 -19.27129 -18.63379 -18.19315 -17.78934 -17.29927 -17.19191 -16.75315 -16.60172 -16.15394 -15.74398 -15.59694 -15.27501 -15.18226 -14.98997 -14.69623 -14.55273 -14.14315 -13.89580 -13.51222 -13.32316 -13.25673 -13.16210 -13.12218 -13.03961 -12.93664 -12.90291 -12.71560 -12.68014 -12.21738 -12.11783 -11.93265 -11.91356 -11.85020 -11.73067 -11.52000 -11.34461 -11.18369 -11.12700 -10.93427 -10.69569 -9.95473 -8.98100 -7.94604 -5.22650 -0.69324 1.47469 1.49914 1.56056 1.69894 2.00504 2.25759 2.56016 2.78991 3.38675 3.42666 3.48140 3.58275 3.78380 3.87355 3.91237 3.93991 4.09355 4.14900 4.27571 4.39112 4.41788 4.47041 4.50780 4.53983 4.57595 4.63503 4.72511 4.86587 4.88948 4.94390 5.04783 5.09789 5.13153 5.17975 5.24909 5.30273 5.31670 5.31926 5.43828 5.48537 5.52708 5.63800 6.27608 6.42134 6.61786 7.31419 7.34770 8.10287 8.34895 9.28350 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.002335 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.552346 B =11986.336647 C =14443.574928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.160 3.840 11 C -0.084 4.084 12 H 0.081 0.919 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.117 4.117 17 C 0.160 3.840 18 H 0.062 0.938 19 N -0.715 5.715 20 C 0.503 3.497 21 O -0.588 6.588 22 C -0.128 4.128 23 C -0.110 4.110 24 C -0.599 4.599 25 S 2.621 3.379 26 N -1.237 6.237 27 O -1.012 7.012 28 O -1.010 7.010 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.028 0.972 32 H 0.001 0.999 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.413 0.587 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.176 0.824 47 H 0.169 0.831 48 H 0.424 0.576 49 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 -18.989 -14.065 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.033 3.967 11 C -0.103 4.103 12 H 0.099 0.901 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.156 4.156 17 C 0.054 3.946 18 H 0.080 0.920 19 N -0.366 5.366 20 C 0.292 3.708 21 O -0.469 6.469 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.731 4.731 25 S 2.716 3.284 26 N -0.914 5.914 27 O -1.001 7.001 28 O -0.999 6.999 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.250 0.750 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.194 0.806 47 H 0.187 0.813 48 H 0.255 0.745 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.617 -19.953 -12.502 25.074 hybrid contribution -0.142 1.901 -0.530 1.979 sum 8.475 -18.052 -13.032 23.823 Atomic orbital electron populations 1.69791 1.06438 1.26119 1.59329 1.25500 0.96369 1.00857 1.03680 0.85266 0.77260 0.79434 0.78119 1.20147 1.22089 1.20930 1.19533 0.91301 0.85496 1.41433 0.91178 1.42513 1.05618 1.00830 1.89287 1.20771 0.93669 0.84992 0.97221 1.21421 0.96840 0.92608 0.99466 0.90064 1.21442 0.97964 0.98878 0.96185 1.21531 0.97396 0.93571 1.02575 1.21479 0.98900 0.97733 0.96881 1.21810 0.97484 0.97148 0.99147 1.20786 0.92541 0.94356 0.86883 0.91984 1.46085 1.27589 1.45899 1.17048 1.21384 0.80424 0.78410 0.90615 1.90698 1.69689 1.43576 1.42943 1.21700 0.96682 1.03411 0.95018 1.21088 0.97278 1.01772 0.94841 1.30279 1.17246 1.18555 1.07061 1.04159 0.75995 0.75225 0.73008 1.52818 1.21096 1.91622 1.25876 1.93560 1.61044 1.81903 1.63625 1.93578 1.83677 1.36515 1.86088 0.93974 0.79116 0.95394 0.98116 0.93030 0.93092 0.91241 0.91177 0.89999 0.92584 0.90449 0.92313 0.75004 0.84751 0.85990 0.91376 0.90518 0.80619 0.81287 0.74499 0.74153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.76 13.06 21.65 0.28 -57.47 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.25 -13.50 9.99 84.04 0.84 -12.66 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -36.28 5.33 -343.44 -1.83 -38.11 16 10 C 0.16 6.18 5.57 86.38 0.48 6.66 16 11 C -0.08 -2.50 1.80 -10.79 -0.02 -2.52 16 12 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.11 -3.22 5.08 30.59 0.16 -3.06 16 14 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 15 C -0.11 -2.34 5.92 30.60 0.18 -2.16 16 16 C -0.12 -2.58 5.49 30.58 0.17 -2.41 16 17 C 0.16 4.15 1.90 44.98 0.09 4.24 16 18 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 19 N -0.72 -15.63 4.30 -442.61 -1.91 -17.53 16 20 C 0.50 11.58 7.79 87.66 0.68 12.26 16 21 O -0.59 -18.90 15.64 -3.04 -0.05 -18.95 16 22 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 23 C -0.11 -1.63 4.51 30.59 0.14 -1.49 16 24 C -0.60 -3.42 6.17 71.98 0.44 -2.98 16 25 S 2.62 35.01 5.97 -56.49 -0.34 34.68 16 26 N -1.24 -6.20 9.36 37.02 0.35 -5.85 16 27 O -1.01 -23.59 18.10 -127.65 -2.31 -25.90 16 28 O -1.01 -22.68 18.10 -127.65 -2.31 -24.99 16 29 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 30 H 0.38 19.46 6.85 -92.71 -0.63 18.83 16 31 H 0.03 1.03 7.30 -2.39 -0.02 1.02 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.83 7.18 -2.39 -0.02 1.81 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 7.21 8.39 -92.71 -0.78 6.43 16 42 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 46 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.42 1.87 8.96 -96.74 -0.87 1.01 16 49 H 0.43 -0.87 8.96 -96.74 -0.87 -1.74 16 Total: -1.00 -87.64 405.51 -4.28 -91.92 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -2.16 Total: 26.33 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 3.97 Total: -11.54 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.11 Total: -118.96 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -4.67 Total: -69.83 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 35.01 SS G_CDS: -0.34 Total: 34.68 kcal Total: -87.64 -4.28 -91.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483444849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.366 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds