Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47155 * 239.99994 * 2 1 3 5 5 N 1.46504 * 109.47118 * 120.00047 * 2 1 3 6 6 S 1.65596 * 119.99900 * 37.72184 * 5 2 1 7 7 O 1.42100 * 104.27807 * 304.08983 * 6 5 2 8 8 O 1.42104 * 104.27752 * 176.23188 * 6 5 2 9 9 C 1.81399 * 104.45067 * 60.16181 * 6 5 2 10 10 C 1.50699 * 109.47163 * 171.74473 * 9 6 5 11 11 O 1.21282 * 120.00229 * 359.97438 * 10 9 6 12 12 N 1.34780 * 120.00058 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00138 * 179.97438 * 12 10 9 14 14 C 1.52997 * 110.63906 * 59.30195 * 13 12 10 15 15 C 1.55150 * 110.72242 * 182.44187 * 13 12 10 16 16 C 1.54919 * 101.58130 * 82.86184 * 15 13 12 17 17 N 1.47424 * 104.82624 * 37.01160 * 16 15 13 18 18 C 1.36940 * 125.64099 * 155.91448 * 17 16 15 19 19 H 1.08003 * 119.99729 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00393 * 359.97151 * 18 17 16 21 21 N 1.31620 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47389 * 60.00021 * 22 20 18 24 24 H 1.48508 * 109.47094 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47019 * 299.99736 * 22 20 18 26 26 C 1.47481 * 108.76288 * 335.88874 * 17 16 15 27 27 H 1.09002 * 109.46441 * 299.99804 * 1 2 3 28 28 H 1.08995 * 109.46747 * 59.99425 * 1 2 3 29 29 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47349 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47395 * 300.00354 * 3 2 1 32 32 H 1.09004 * 109.47049 * 59.99967 * 3 2 1 33 33 H 1.09001 * 109.47022 * 296.00351 * 4 2 1 34 34 H 1.08999 * 109.46861 * 55.99893 * 4 2 1 35 35 H 1.08997 * 109.47138 * 175.99701 * 4 2 1 36 36 H 0.96998 * 119.99579 * 217.72167 * 5 2 1 37 37 H 1.09005 * 109.46889 * 291.74254 * 9 6 5 38 38 H 1.08995 * 109.47066 * 51.73796 * 9 6 5 39 39 H 0.96999 * 119.99515 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47248 * 60.70192 * 14 13 12 41 41 H 1.09000 * 109.47333 * 180.70302 * 14 13 12 42 42 H 1.09004 * 109.47391 * 300.70049 * 14 13 12 43 43 H 1.08996 * 111.00696 * 200.93754 * 15 13 12 44 44 H 1.09001 * 111.00646 * 324.79428 * 15 13 12 45 45 H 1.09001 * 110.36228 * 155.84961 * 16 15 13 46 46 H 1.08999 * 110.36854 * 278.17367 * 16 15 13 47 47 H 0.96998 * 119.99808 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.03422 * 241.66629 * 26 17 16 49 49 H 1.08998 * 109.96091 * 120.35211 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 16 1.2249 -2.0299 1.7610 7 8 -0.1115 -1.5886 1.9572 8 8 2.0182 -2.4725 2.8537 9 6 1.3087 -3.2167 0.3917 10 6 0.7950 -4.5555 0.8551 11 8 0.4107 -4.6954 1.9969 12 7 0.7627 -5.5974 0.0008 13 6 0.2639 -6.8991 0.4514 14 6 -1.1820 -6.7833 0.9382 15 6 0.3790 -7.9532 -0.6811 16 6 1.8568 -8.3973 -0.5435 17 7 2.1168 -8.3986 0.9076 18 6 3.0802 -9.1341 1.5450 19 1 3.1915 -9.0646 2.6170 20 6 3.9135 -9.9690 0.8134 21 7 3.7782 -10.0534 -0.4931 22 14 5.2271 -10.9728 1.6831 23 1 4.5856 -11.8800 2.6682 24 1 5.9770 -11.7773 0.6852 25 1 6.1627 -10.0595 2.3872 26 6 1.1687 -7.4765 1.5602 27 1 -0.3632 0.5138 0.8901 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7364 -1.7675 -1.2141 34 1 1.6193 -0.2505 -2.1378 35 1 3.1277 -0.6595 -1.2858 36 1 2.8065 -0.3634 1.6573 37 1 0.6967 -2.8596 -0.4366 38 1 2.3426 -3.3185 0.0619 39 1 1.0705 -5.4856 -0.9123 40 1 -1.8144 -6.4387 0.1200 41 1 -1.5294 -7.7583 1.2802 42 1 -1.2323 -6.0706 1.7614 43 1 -0.2980 -8.7894 -0.5069 44 1 0.1962 -7.5010 -1.6559 45 1 1.9919 -9.3979 -0.9541 46 1 2.5144 -7.6881 -1.0462 47 1 4.3603 -10.6371 -1.0043 48 1 1.7116 -6.6700 2.0532 49 1 0.5640 -8.0180 2.2877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484072323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = -72.748289 kcal Electronic energy + Delta-G solvation = -30572.194790 eV Core-core repulsion = 26469.804264 eV Total energy + Delta-G solvation = -4102.390526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.14641 -38.51463 -37.50344 -36.99237 -35.94710 -34.14827 -32.33738 -31.30037 -30.77491 -29.50799 -28.68904 -27.74773 -27.59758 -25.70436 -23.72615 -21.57826 -20.88838 -20.37019 -19.32500 -19.20066 -18.11822 -17.17671 -16.73099 -16.53663 -16.50037 -15.67046 -15.49169 -14.82072 -14.70756 -14.58976 -14.34782 -14.05972 -13.77181 -13.42855 -13.23763 -13.05134 -12.79807 -12.74076 -12.67193 -12.25865 -12.21718 -12.00658 -11.96725 -11.87291 -11.83450 -11.80321 -11.64927 -11.59948 -11.14900 -10.95607 -10.89962 -10.84093 -10.54202 -10.39498 -10.15307 -10.12317 -9.92478 -9.70985 -9.49793 -8.84191 -8.65235 -6.83482 -5.66259 -3.06539 0.05114 2.49419 2.54640 3.07872 3.42106 3.45522 3.47582 3.76048 4.04467 4.18927 4.40527 4.44366 4.49710 4.52536 4.69949 4.82890 4.97603 5.09049 5.13404 5.17705 5.31400 5.33305 5.41213 5.45181 5.45643 5.52664 5.66232 5.68561 5.72952 5.89710 5.96179 6.03078 6.10734 6.16422 6.28398 6.38999 6.44926 6.63251 6.69522 6.78179 7.01841 7.39753 7.51954 7.62881 7.80372 8.15536 8.33710 9.22220 9.82246 10.46741 11.38250 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002907 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.264824 B = 9629.085357 C =10068.214417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.165 3.835 3 C -0.148 4.148 4 C -0.186 4.186 5 N -1.115 6.115 6 S 2.647 3.353 7 O -0.941 6.941 8 O -0.938 6.938 9 C -0.680 4.680 10 C 0.543 3.457 11 O -0.532 6.532 12 N -0.692 5.692 13 C 0.155 3.845 14 C -0.154 4.154 15 C -0.145 4.145 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.927 5.927 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.133 3.867 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.418 0.582 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.401 0.599 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 21.761 -6.541 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.244 4.244 5 N -0.875 5.875 6 S 2.734 3.266 7 O -0.930 6.930 8 O -0.928 6.928 9 C -0.807 4.807 10 C 0.326 3.674 11 O -0.411 6.411 12 N -0.341 5.341 13 C 0.069 3.931 14 C -0.212 4.212 15 C -0.184 4.184 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.746 3.254 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.007 3.993 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.253 0.747 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.236 0.764 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.253 21.291 -5.041 23.050 hybrid contribution 1.630 -0.435 -0.769 1.855 sum -5.623 20.856 -5.810 22.368 Atomic orbital electron populations 1.22605 0.92811 1.04085 1.04016 1.20270 0.94430 0.93651 0.83974 1.22035 1.01607 0.93976 1.03077 1.22699 1.02812 1.01262 0.97664 1.55952 1.45503 1.45362 1.40658 1.04128 0.74583 0.73455 0.74404 1.93615 1.37022 1.78805 1.83607 1.93612 1.70197 1.81274 1.47686 1.31430 1.12488 1.12287 1.24545 1.18997 0.78478 0.84113 0.85778 1.90824 1.48332 1.84002 1.17904 1.45863 1.64020 1.09811 1.14451 1.21497 0.93600 0.81261 0.96716 1.22087 0.94074 1.03170 1.01894 1.23372 1.02440 0.97065 0.95571 1.21951 0.87258 1.02723 0.85321 1.44610 1.37315 1.48412 1.02740 1.19081 1.07254 1.16612 0.91665 0.90491 1.24756 0.99859 1.00449 0.95724 1.69757 1.41020 1.42289 1.04513 0.86131 0.81301 0.79832 0.78141 1.21131 1.21614 1.21224 1.21734 0.91459 0.92931 0.93215 0.90036 0.90915 0.91484 0.91822 0.91019 0.91575 0.91754 0.90664 0.91204 0.74667 0.82325 0.82071 0.76391 0.92963 0.91381 0.90606 0.90252 0.91827 0.87307 0.97241 0.93770 0.94618 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 7.09 37.16 0.26 -1.08 16 2 C 0.17 1.08 1.16 -131.81 -0.15 0.93 16 3 C -0.15 -0.73 8.65 37.16 0.32 -0.41 16 4 C -0.19 -0.96 8.61 37.16 0.32 -0.64 16 5 N -1.11 -9.27 5.42 0.54 0.00 -9.27 16 6 S 2.65 33.77 4.25 -107.50 -0.46 33.31 16 7 O -0.94 -13.94 14.49 -57.54 -0.83 -14.77 16 8 O -0.94 -16.27 17.75 -61.35 -1.09 -17.36 16 9 C -0.68 -7.23 4.73 36.01 0.17 -7.06 16 10 C 0.54 8.56 7.06 -10.98 -0.08 8.48 16 11 O -0.53 -10.43 12.56 0.71 0.01 -10.42 16 12 N -0.69 -10.51 5.15 -45.92 -0.24 -10.75 16 13 C 0.15 2.74 0.80 -129.99 -0.10 2.64 16 14 C -0.15 -2.42 8.41 37.16 0.31 -2.11 16 15 C -0.15 -2.56 6.08 -24.58 -0.15 -2.71 16 16 C 0.15 3.55 5.87 -2.52 -0.01 3.53 16 17 N -0.60 -15.66 3.41 -169.70 -0.58 -16.24 16 18 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 19 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.93 -26.68 10.09 55.49 0.56 -26.12 16 22 Si 0.92 22.38 29.55 -169.99 -5.02 17.35 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.13 3.00 6.19 -2.81 -0.02 2.98 16 27 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.56 5.23 -51.93 -0.27 0.29 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 4.22 -51.93 -0.22 0.09 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.42 2.85 8.67 -34.47 -0.30 2.55 16 37 H 0.16 1.08 5.79 -51.92 -0.30 0.78 16 38 H 0.16 1.32 7.93 -51.93 -0.41 0.91 16 39 H 0.40 4.91 8.48 -40.82 -0.35 4.57 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 42 H 0.08 1.30 6.20 -51.93 -0.32 0.98 16 43 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 44 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 45 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 48 H 0.04 0.88 6.68 -51.93 -0.35 0.53 16 49 H 0.04 0.80 7.80 -51.93 -0.41 0.40 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -37.46 384.46 -9.04 -46.50 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.81 Total: 4.23 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 0.62 Total: -2.26 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.25 Total: -62.37 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.91 Total: -42.55 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 33.77 SS G_CDS: -0.46 Total: 33.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.46 -9.04 -46.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484072323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.248 kcal (2) G-P(sol) polarization free energy of solvation -37.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds